Rh2CG155900

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0003684
Physical Location & Seq
Reverse (-)
13553510 .. 13556714
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG155900.1

Sequence Viewer

Length: 1464 bp
ATGAACCCAAATCCTGTTAGTCTGATCCTCTGTTTAACTGCTCTCTCAACCGTGAATTCAGATTCTCTCGCTCTAAATTCACCACCGCATTTGATCTCCGGCCGCCTCTCTCAGCCCTACGACGTAATGGCGACTTCTGAGGAGGAGCATCCCGTTGATAATGACAATCTTGTGGACAATGATTCTGAAGAAGATCTGTTTGATGACATTGCAGAACAGCATATAGAGTCTTCAAATGAGCTCAAAGTGGTGGATCTCTCTGATGTGTTTGGCAGAGATCCTCGCAAAAGAACCGCTCCTGTAGATGTTCCTTATGATGAATTTCCACACAAAAGGTTTAAGCAAAACATGGAGATCCAAGATGTTGTAATGGAGCATGCTCTTTATTTTCTCCCTGCCAAGTCGCTTTGCAGATTCAAAACTGTTAACAAAGAGTGGGATCGGTACATTAACAGTCCCTTTTTCGCTCACCAGCAAACTCACTCCTTCCGAGACATCTCTGGTCTTTTTTGTCAACTCCCTGGTGATAAGCCTTCCTTCATATCACTCGATCAAGATGCTTATGGAATTCCTAGTCCATCCCTCAGTTTCTTGCCTCAGCCTGTTACTCTCAGAACCGCTTGCAATGGTCTGCTTTGCTGCCAAAACTGCTTTGAACAAAATAGCTACTACATTTGTAACCCTGTGAATGAGGAATGGAAAGTGCTTCCGGAGCCAAACTTTTATCATGGACCTGATCAATCAGCCTTGGCACTAGCCTTTGAGCCTTCGGCACTAAACTTTGCAGCACATTTTGAACTTGTGTGTGCATTTTCTCTATCTTTAACTGATCAACCAGTCATCTGCTTTGAGATATACTCTTCAAGGTCAAGGTCCTGGAGACTCGCTGAGACTGTATGTTCTGAGCTAGATTGCTTGAAGTTGAATGGGGATGGAATCTTCCTGAAGGGTGTAGTCTTTTGGGAAACTTTTGCTGGGGCCATTCTGGCTTTTGACTTGAAGGAGGAGCACTATGGCATTCTGTCACTCCCTCCCAACAGTGGACCGCAAGGTGTTCTAACAGAGATGCGGGGTGAGCTGTGCTATATTCTGCCTGTTAGAGAAGGTAATAGTTACACCTTGGAAATCTATGGTGATATGGACATGAATCTCAAGCATATAATTCCTCTCAATCTTGGTTTTCTTTCTCATACTCACCAAGAGTCGATAAGGGTTTTGGCTTGTGTGAATGATGATGCTGTGGTAATTCTTTTTGGAGACAGAGTGATTGCTTATAATATGAAAGCTAGGACGGTTGAAACATTAAGGGATATAGTGAATGGTAATTACAATGGTGAATACAATGCTGGATTTGCAAAGCATCTTCCTTATGTGAACAGCCTTGTTCATGTACACTCATCATACATAACGAGCCTCCTTTCTGAAGATCCTACTACCTCCTATTCCTATCTGAAGTCTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

487

Amino Acids

54.81

Weight (kDa)

4.79

Isoelectric Point (pI)

45.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 205 - 374 1.3e-06 F-box associated beta propeller domain
FBA_1 PF07734 206 - 377 3.1e-12 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 206 - 377 7.2e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1275
AccBSI CCGCTC 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 6 cut(s) 86, 103, 294, 618, 1046, 1069
AclWI GGATC 6 cut(s) 19, 261, 272, 349, 447, 1421
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 4 cut(s) 55, 76, 320, 567
AcuI CTGAAG 3 cut(s) 207, 965, 1443
AfaI GTAC 2 cut(s) 446, 1392
AfiI CCNNNNNNNGG 1 cut(s) 1040
AgsI TTSAA 9 cut(s) 234, 418, 656, 797, 864, 919, 925, 1000, 1298
AjnI CCWGG 2 cut(s) 520, 875
AluBI AGCT 5 cut(s) 241, 666, 907, 1078, 1286
AluI AGCT 5 cut(s) 241, 666, 907, 1078, 1286
Alw21I GWGCWC 2 cut(s) 243, 1011
Alw26I GTCTC 4 cut(s) 486, 874, 884, 1251
AlwI GGATC 6 cut(s) 19, 261, 272, 349, 447, 1421
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 2 cut(s) 100, 978
ApeKI GCWGC 2 cut(s) 639, 785
ApoI RAATTY 4 cut(s) 55, 76, 320, 567
AspS9I GGNCC 4 cut(s) 731, 873, 978, 1043
AsuHPI GGTGA 7 cut(s) 72, 461, 536, 1085, 1145, 1187, 1346
AvaII GGWCC 3 cut(s) 731, 873, 1043
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 243, 1011
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 626, 797
BccI CCATC 2 cut(s) 586, 926
BcgI CGANNNNNNTGC 2 cut(s) 539, 573
BciT130I CCWGG 2 cut(s) 522, 877
BclI TGATCA 2 cut(s) 736, 829
BcoDI GTCTC 4 cut(s) 486, 874, 884, 1251
BfaI CTAG 4 cut(s) 573, 755, 908, 1287
BfmI CTRYAG 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 986
BglII AGATCT 1 cut(s) 193
BisI GCNGC 3 cut(s) 103, 640, 786
BlsI GCNGC 3 cut(s) 104, 641, 787
Bme1390I CCNGG 2 cut(s) 522, 877
Bme18I GGWCC 3 cut(s) 731, 873, 1043
BmgT120I GGNCC 4 cut(s) 731, 873, 978, 1043
BmiI GGNNCC 2 cut(s) 714, 979
BmrFI CCNGG 2 cut(s) 522, 877
BmsI GCATC 5 cut(s) 157, 547, 1056, 1225, 1369
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 842, 874
BpmI CTGGAG 1 cut(s) 898
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 1 cut(s) 1136
BsaJI CCNNGG 3 cut(s) 520, 747, 1119
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 2 cut(s) 1248, 1278
Bsc4I CCNNNNNNNGG 1 cut(s) 1040
Bse1I ACTGG 1 cut(s) 836
Bse3DI GCAATG 2 cut(s) 207, 631
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 2 cut(s) 522, 877
BseDI CCNNGG 3 cut(s) 520, 747, 1119
BseGI GGATG 3 cut(s) 148, 578, 937
BseLI CCNNNNNNNGG 1 cut(s) 1040
BseMI GCAATG 2 cut(s) 207, 631
BseMII CTCAG 7 cut(s) 125, 129, 598, 611, 625, 879, 894
BseNI ACTGG 1 cut(s) 836
BseRI GAGGAG 3 cut(s) 155, 158, 1019
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 626, 797
BseYI CCCAGC 1 cut(s) 974
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 980
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 243, 1011
BsiSI CCGG 2 cut(s) 99, 710
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 1 cut(s) 1040
BsmAI GTCTC 4 cut(s) 486, 874, 884, 1251
BsmFI GGGAC 1 cut(s) 441
BsmI GAATGC 1 cut(s) 1017
BsnI GGCC 2 cut(s) 102, 980
Bsp1286I GDGCHC 2 cut(s) 243, 1011
Bsp13I TCCGGA 1 cut(s) 709
Bsp1407I TGTACA 1 cut(s) 1390
BspACI CCGC 6 cut(s) 86, 103, 294, 618, 1046, 1069
BspANI GGCC 2 cut(s) 102, 980
BspCNI CTCAG 7 cut(s) 124, 130, 597, 610, 624, 880, 895
BspEI TCCGGA 1 cut(s) 709
BspLI GGNNCC 2 cut(s) 714, 979
BspPI GGATC 6 cut(s) 19, 261, 272, 349, 447, 1421
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 207, 631
BsrGI TGTACA 1 cut(s) 1390
BsrI ACTGG 1 cut(s) 836
BssECI CCNNGG 3 cut(s) 520, 747, 1119
BssT1I CCWWGG 2 cut(s) 747, 1119
Bst2UI CCWGG 2 cut(s) 522, 877
Bst4CI ACNGT 6 cut(s) 52, 424, 455, 895, 1040, 1294
Bst6I CTCTTC 1 cut(s) 865
BstAUI TGTACA 1 cut(s) 1390
BstC8I GCNNGC 2 cut(s) 378, 622
BstDEI CTNAG 7 cut(s) 111, 138, 584, 597, 611, 888, 903
BstF5I GGATG 3 cut(s) 148, 578, 937
BstMAI GTCTC 4 cut(s) 486, 874, 884, 1251
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 5 cut(s) 648, 712, 986, 1075, 1352
BstNI CCWGG 2 cut(s) 522, 877
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 520, 875
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 626, 797
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 5 cut(s) 193, 253, 277, 354, 1426
BstYI RGATCY 5 cut(s) 193, 253, 277, 354, 1426
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 102, 980
BtsCI GGATG 3 cut(s) 148, 578, 937
BtsIMutI CAGTG 1 cut(s) 1045
Cac8I GCNNGC 2 cut(s) 378, 622
Cfr13I GGNCC 4 cut(s) 731, 873, 978, 1043
Csp6I GTAC 2 cut(s) 445, 1391
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 5 cut(s) 349, 377, 728, 1144, 1388
CviQI GTAC 2 cut(s) 445, 1391
DdeI CTNAG 7 cut(s) 111, 138, 584, 597, 611, 888, 903
EaeI YGGCCR 1 cut(s) 100
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 865
EarI CTCTTC 1 cut(s) 865
Ecl136II GAGCTC 1 cut(s) 241
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 2 cut(s) 747, 1119
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 3 cut(s) 731, 873, 1043
Eco52I CGGCCG 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 3 cut(s) 207, 965, 1443
EcoICRI GAGCTC 1 cut(s) 241
EcoO109I RGGNCCY 1 cut(s) 873
EcoRI GAATTC 2 cut(s) 55, 567
EcoRII CCWGG 2 cut(s) 520, 875
EcoT14I CCWWGG 2 cut(s) 747, 1119
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 747, 1119
FaeI CATG 5 cut(s) 352, 380, 731, 1147, 1391
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 1 cut(s) 441
FatI CATG 5 cut(s) 348, 376, 727, 1143, 1387
FauI CCCGC 1 cut(s) 1062
FbaI TGATCA 2 cut(s) 736, 829
Fnu4HI GCNGC 3 cut(s) 103, 640, 786
FokI GGATG 3 cut(s) 135, 565, 944
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 3 cut(s) 103, 640, 786
FspBI CTAG 4 cut(s) 573, 755, 908, 1287
GluI GCNGC 3 cut(s) 103, 640, 786
GsaI CCCAGC 1 cut(s) 978
GsuI CTGGAG 1 cut(s) 898
HaeIII GGCC 2 cut(s) 102, 980
HapII CCGG 2 cut(s) 99, 710
Hin1II CATG 5 cut(s) 352, 380, 731, 1147, 1391
HincII GTYRAC 2 cut(s) 427, 515
HindII GTYRAC 2 cut(s) 427, 515
HinfI GANTC 8 cut(s) 62, 182, 227, 414, 882, 936, 1147, 1202
HpaI GTTAAC 1 cut(s) 427
HpaII CCGG 2 cut(s) 99, 710
HphI GGTGA 7 cut(s) 72, 461, 536, 1085, 1145, 1187, 1346
Hpy166II GTNNAC 6 cut(s) 175, 427, 515, 1043, 1375, 1393
Hpy188III TCNNGA 3 cut(s) 554, 710, 943
Hpy8I GTNNAC 6 cut(s) 175, 427, 515, 1043, 1375, 1393
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 7 cut(s) 496, 543, 547, 777, 940, 994, 1097
HpyCH4III ACNGT 6 cut(s) 52, 424, 455, 895, 1040, 1294
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 6 cut(s) 212, 411, 624, 785, 809, 1355
HpyF10VI GCNNNNNNNGC 5 cut(s) 648, 712, 986, 1075, 1352
HpyF3I CTNAG 7 cut(s) 111, 138, 584, 597, 611, 888, 903
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 5 cut(s) 352, 380, 731, 1147, 1391
Kpn2I TCCGGA 1 cut(s) 709
Ksp22I TGATCA 2 cut(s) 736, 829
KspAI GTTAAC 1 cut(s) 427
LmnI GCTCC 5 cut(s) 145, 301, 373, 712, 1006
Lsp1109I GCAGC 2 cut(s) 626, 797
LweI GCATC 5 cut(s) 157, 547, 1056, 1225, 1369
MaeI CTAG 4 cut(s) 573, 755, 908, 1287
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 4 cut(s) 604, 677, 1023, 1112
MbiI CCGCTC 1 cut(s) 296
MboII GAAGA 7 cut(s) 200, 203, 222, 852, 931, 1355, 1436
MflI RGATCY 5 cut(s) 193, 253, 277, 354, 1426
MhlI GDGCHC 2 cut(s) 243, 1011
MluCI AATT 7 cut(s) 55, 76, 320, 567, 1161, 1245, 1324
MlyI GAGTC 3 cut(s) 236, 876, 1211
MroI TCCGGA 1 cut(s) 709
MseI TTAA 6 cut(s) 35, 339, 426, 450, 824, 1304
MspI CCGG 2 cut(s) 99, 710
MspR9I CCNGG 2 cut(s) 522, 877
Mva1269I GAATGC 1 cut(s) 1017
MvaI CCWGG 2 cut(s) 522, 877
MwoI GCNNNNNNNGC 5 cut(s) 648, 712, 986, 1075, 1352
NlaIII CATG 5 cut(s) 352, 380, 731, 1147, 1391
NlaIV GGNNCC 2 cut(s) 714, 979
NmuCI GTSAC 1 cut(s) 1023
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PctI GAATGC 1 cut(s) 1017
PfeI GAWTC 5 cut(s) 62, 182, 414, 936, 1147
PfoI TCCNGGA 1 cut(s) 875
PkrI GCNGC 3 cut(s) 104, 641, 787
PleI GAGTC 3 cut(s) 235, 876, 1210
PpsI GAGTC 3 cut(s) 235, 876, 1210
PpuMI RGGWCCY 1 cut(s) 873
PsiI TTATAA 1 cut(s) 1275
Psp124BI GAGCTC 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 873
Psp6I CCWGG 2 cut(s) 520, 875
PspFI CCCAGC 1 cut(s) 974
PspGI CCWGG 2 cut(s) 520, 875
PspN4I GGNNCC 2 cut(s) 714, 979
PspPI GGNCC 4 cut(s) 731, 873, 978, 1043
PspPPI RGGWCCY 1 cut(s) 873
PsuI RGATCY 5 cut(s) 193, 253, 277, 354, 1426
RsaI GTAC 2 cut(s) 446, 1392
RsaNI GTAC 2 cut(s) 445, 1391
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 6 cut(s) 35, 339, 426, 450, 824, 1304
SatI GCNGC 3 cut(s) 103, 640, 786
Sau96I GGNCC 4 cut(s) 731, 873, 978, 1043
SchI GAGTC 3 cut(s) 236, 876, 1211
ScrFI CCNGG 2 cut(s) 522, 877
SduI GDGCHC 2 cut(s) 243, 1011
SfaNI GCATC 5 cut(s) 157, 547, 1056, 1225, 1369
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 3 cut(s) 731, 873, 1043
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
SphI GCATGC 1 cut(s) 380
Sse9I AATT 7 cut(s) 55, 76, 320, 567, 1161, 1245, 1324
SsiI CCGC 6 cut(s) 86, 103, 294, 618, 1046, 1069
SspMI CTAG 4 cut(s) 573, 755, 908, 1287
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 520, 875
StyI CCWWGG 2 cut(s) 747, 1119
TaaI ACNGT 6 cut(s) 52, 424, 455, 895, 1040, 1294
TaiI ACGT 1 cut(s) 126
TaqI TCGA 2 cut(s) 549, 1205
TasI AATT 7 cut(s) 55, 76, 320, 567, 1161, 1245, 1324
TatI WGTACW 1 cut(s) 1390
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 5 cut(s) 62, 182, 414, 936, 1147
Tru1I TTAA 6 cut(s) 35, 339, 426, 450, 824, 1304
Tru9I TTAA 6 cut(s) 35, 339, 426, 450, 824, 1304
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 1 cut(s) 1023
TseI GCWGC 2 cut(s) 639, 785
Tsp45I GTSAC 1 cut(s) 1023
TspDTI ATGAA 6 cut(s) 17, 333, 529, 1160, 1295, 1376
TspRI CASTG 1 cut(s) 1045
VpaK11BI GGWCC 3 cut(s) 731, 873, 1043
XapI RAATTY 4 cut(s) 55, 76, 320, 567
XceI RCATGY 1 cut(s) 380
XspI CTAG 4 cut(s) 573, 755, 908, 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.