RLG00000017106

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003684
Physical Location & Seq
Reverse (-)
12886190 .. 12889100
2911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017106

Sequence Viewer

Length: 1464 bp
ATGAACCCAAATCCAATTCCAAATCTTATTAGTCTGATCCTCTCTTTAACTGCTCTCTCAAGTCTCAACCGTGTAAATTCAACGCCACATTTGATCTCCGGCCGCCTCTCTCAGCCCTACGACGTAATGGCGACTTCTGAGGAGGAGCATCCCGTTGATAATGACAATCCTGTGGACAATGATTCTGAAGAAGATCTGTTTGATGACATTGCAGAACAGCATATACAGTCTTCAAATGAGCTCAAAGTGGTGGATCGCTCTGATGTGTTTGGCAGAGATCCTCGCAAAAGAACCGCTCCTGTAGATGTTCCTTATGATGAATTTCCACACAAAAGGTTTAAGCAAAACATGGAGATCCAAGATGTTGTAATGGAGCATGCTCTTTATTTCCTCCCTGCCAAGTCGCTTTGCAGATTCAAAACTGTTAACAAAGAGTGGGATCAGTACATTAACAGTCCCTTTTTCGCTCACCAGCAAACTCACTCCTTCCGAGACATCTCTGGTCTTTTTTGTCAACTCCCTGGCGATAAGCCTTCCTTCATCTCACTCAATCAAGATGCTTATGGCATTCCTAGTCCATCCCTCAGTTTCTTGCCTCAGCCTGTTACTCTCAGAACTGCTTGCAATGGTCTGCTTTGCTGCCAAAACTGCTTTGAACAAAATAGCTACTACATTTGTAACCCTGTGAATGAGGAATGGAAAGTGCTTCCGGAGCCAAACTTTTATCATGGACCTGATCAATCAGCCTTGGCACTAGCCTTTGAACCTTCGGCACTAAACTTTGCAGCACATTTTGAACTTGTGTGTGCATTTTCTCTATCTTTAACTGATCAACCAGTCATCTGCTTTGAGATATACTCTTCAAGGTCAAGCTCCTGGAGACTCGCTGAGACTGTATGTTCTGAGCTAGATGCCTTGAAGTTGAATGGGGATGGAATCTTCCTGAAGGGTGTAGTCTTTTGGGAAACTTTTGCTGGGGCCATTCTGGCTTTTGACTTGAAGGAGGAGCACTATGGCATTCTGTCACTCCCTCCCAACAGTGGACCGCAAGGTGTTCTAACAGAGATGCGGGGTGAGCTGTGCTATATTCTGCCTGTTAGAGAAGGTGATAGTTCCACCTTGGAAATCTATGGTGATATGGACATGAATCTCAAGCATATAATTCCTCTCGATCTTGGTTTTCTTTCTCATGCTCACCAAGAGTCGATAAGGGTTTTGGCTTGTGTGAATGATGATGCTGTGGTAATTCTTGTTGGAGACAGAGTGATTGCTTATAATATGAAAGCTGGGACGGTTGAAACATTAAGGGATATAGTGATTGGTAATTACAATGGTGAATACAATGCTGGATTTGCAAAGTATCTTCCTTATGTGAACAGCCTTGTTCATGTGCGCTCATCATACGTAACAAGCCTCCTTTCTGAATATCCTACTACCTCCTATTCCTATCTGAAGTCTCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

488

Amino Acids

54.64

Weight (kDa)

4.78

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 205 - 377 2.2e-09 F-box protein At3g26010-like, beta-propeller
FBA_3 PF08268 205 - 366 2e-06 F-box associated beta propeller domain
FBA_1 PF07734 206 - 377 3.2e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1275
AccBSI CCGCTC 1 cut(s) 296
AccIII TCCGGA 1 cut(s) 709
AciI CCGC 4 cut(s) 103, 294, 1046, 1069
AclWI GGATC 5 cut(s) 31, 261, 272, 349, 447
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 2 cut(s) 76, 320
AcuI CTGAAG 2 cut(s) 207, 965
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 1040
AjnI CCWGG 2 cut(s) 520, 875
AluBI AGCT 6 cut(s) 241, 666, 873, 907, 1078, 1286
AluI AGCT 6 cut(s) 241, 666, 873, 907, 1078, 1286
Alw21I GWGCWC 2 cut(s) 243, 1011
Alw26I GTCTC 5 cut(s) 68, 486, 874, 884, 1251
AlwI GGATC 5 cut(s) 31, 261, 272, 349, 447
Aor13HI TCCGGA 1 cut(s) 709
AoxI GGCC 2 cut(s) 100, 978
ApeKI GCWGC 2 cut(s) 639, 785
ApoI RAATTY 2 cut(s) 76, 320
AspLEI GCGC 1 cut(s) 1395
AspS9I GGNCC 3 cut(s) 731, 978, 1043
AsuHPI GGTGA 6 cut(s) 461, 1085, 1118, 1145, 1187, 1346
AvaII GGWCC 2 cut(s) 731, 1043
BanII GRGCYC 1 cut(s) 243
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 2 cut(s) 243, 1011
BbvCI CCTCAGC 1 cut(s) 597
BbvI GCAGC 2 cut(s) 626, 797
BccI CCATC 2 cut(s) 586, 926
BciT130I CCWGG 2 cut(s) 522, 877
BclI TGATCA 2 cut(s) 736, 829
BcoDI GTCTC 5 cut(s) 68, 486, 874, 884, 1251
BfaI CTAG 3 cut(s) 573, 755, 908
BfmI CTRYAG 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 986
BglII AGATCT 1 cut(s) 193
BisI GCNGC 3 cut(s) 103, 640, 786
BlsI GCNGC 3 cut(s) 104, 641, 787
Bme1390I CCNGG 2 cut(s) 522, 877
Bme18I GGWCC 2 cut(s) 731, 1043
BmgT120I GGNCC 3 cut(s) 731, 978, 1043
BmiI GGNNCC 2 cut(s) 714, 979
BmrFI CCNGG 2 cut(s) 522, 877
BmsI GCATC 5 cut(s) 157, 547, 901, 1056, 1225
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 842, 874
BpmI CTGGAG 1 cut(s) 898
Bpu10I CCTNAGC 1 cut(s) 597
BpuEI CTTGAG 2 cut(s) 43, 1136
BsaAI YACGTR 1 cut(s) 1405
BsaJI CCNNGG 3 cut(s) 520, 747, 1119
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 2 cut(s) 1248, 1278
Bsc4I CCNNNNNNNGG 1 cut(s) 1040
Bse1I ACTGG 1 cut(s) 836
Bse3DI GCAATG 2 cut(s) 207, 631
BseAI TCCGGA 1 cut(s) 709
BseBI CCWGG 2 cut(s) 522, 877
BseDI CCNNGG 3 cut(s) 520, 747, 1119
BseGI GGATG 3 cut(s) 148, 578, 937
BseLI CCNNNNNNNGG 1 cut(s) 1040
BseMI GCAATG 2 cut(s) 207, 631
BseMII CTCAG 7 cut(s) 125, 129, 598, 611, 625, 879, 894
BseNI ACTGG 1 cut(s) 836
BseRI GAGGAG 3 cut(s) 155, 158, 1019
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 2 cut(s) 626, 797
BseYI CCCAGC 2 cut(s) 974, 1286
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 980
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 2 cut(s) 243, 1011
BsiSI CCGG 2 cut(s) 99, 710
BslFI GGGAC 2 cut(s) 441, 1303
BslI CCNNNNNNNGG 1 cut(s) 1040
BsmAI GTCTC 5 cut(s) 68, 486, 874, 884, 1251
BsmFI GGGAC 2 cut(s) 441, 1303
BsmI GAATGC 2 cut(s) 567, 1017
BsnI GGCC 2 cut(s) 102, 980
Bsp1286I GDGCHC 2 cut(s) 243, 1011
Bsp13I TCCGGA 1 cut(s) 709
BspACI CCGC 4 cut(s) 103, 294, 1046, 1069
BspANI GGCC 2 cut(s) 102, 980
BspCNI CTCAG 7 cut(s) 124, 130, 597, 610, 624, 880, 895
BspEI TCCGGA 1 cut(s) 709
BspLI GGNNCC 2 cut(s) 714, 979
BspPI GGATC 5 cut(s) 31, 261, 272, 349, 447
BsrBI CCGCTC 1 cut(s) 296
BsrDI GCAATG 2 cut(s) 207, 631
BsrI ACTGG 1 cut(s) 836
BssECI CCNNGG 3 cut(s) 520, 747, 1119
BssT1I CCWWGG 2 cut(s) 747, 1119
Bst2UI CCWGG 2 cut(s) 522, 877
Bst4CI ACNGT 7 cut(s) 71, 228, 424, 455, 895, 1040, 1294
Bst6I CTCTTC 1 cut(s) 865
BstBAI YACGTR 1 cut(s) 1405
BstC8I GCNNGC 2 cut(s) 378, 622
BstDEI CTNAG 7 cut(s) 111, 138, 584, 597, 611, 888, 903
BstF5I GGATG 3 cut(s) 148, 578, 937
BstHHI GCGC 1 cut(s) 1395
BstMAI GTCTC 5 cut(s) 68, 486, 874, 884, 1251
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 5 cut(s) 648, 712, 986, 1075, 1352
BstNI CCWGG 2 cut(s) 522, 877
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 520, 875
BstSFI CTRYAG 1 cut(s) 300
BstSNI TACGTA 1 cut(s) 1405
BstV1I GCAGC 2 cut(s) 626, 797
BstV2I GAAGAC 1 cut(s) 222
BstX2I RGATCY 3 cut(s) 193, 277, 354
BstYI RGATCY 3 cut(s) 193, 277, 354
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 102, 980
BtsCI GGATG 3 cut(s) 148, 578, 937
BtsIMutI CAGTG 1 cut(s) 1045
Cac8I GCNNGC 2 cut(s) 378, 622
CfoI GCGC 1 cut(s) 1395
Cfr13I GGNCC 3 cut(s) 731, 978, 1043
Csp6I GTAC 1 cut(s) 445
CviAII CATG 6 cut(s) 349, 377, 728, 1144, 1190, 1388
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 7 cut(s) 111, 138, 584, 597, 611, 888, 903
EaeI YGGCCR 1 cut(s) 100
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 865
EarI CTCTTC 1 cut(s) 865
Ecl136II GAGCTC 1 cut(s) 241
EclXI CGGCCG 1 cut(s) 100
Eco105I TACGTA 1 cut(s) 1405
Eco130I CCWWGG 2 cut(s) 747, 1119
Eco24I GRGCYC 1 cut(s) 243
Eco47I GGWCC 2 cut(s) 731, 1043
Eco52I CGGCCG 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 241
Eco57I CTGAAG 2 cut(s) 207, 965
EcoICRI GAGCTC 1 cut(s) 241
EcoRII CCWGG 2 cut(s) 520, 875
EcoT14I CCWWGG 2 cut(s) 747, 1119
EcoT38I GRGCYC 1 cut(s) 243
ErhI CCWWGG 2 cut(s) 747, 1119
FaeI CATG 6 cut(s) 352, 380, 731, 1147, 1193, 1391
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 2 cut(s) 441, 1303
FatI CATG 6 cut(s) 348, 376, 727, 1143, 1189, 1387
FauI CCCGC 1 cut(s) 1062
FbaI TGATCA 2 cut(s) 736, 829
Fnu4HI GCNGC 3 cut(s) 103, 640, 786
FokI GGATG 3 cut(s) 135, 565, 944
FriOI GRGCYC 1 cut(s) 243
Fsp4HI GCNGC 3 cut(s) 103, 640, 786
FspBI CTAG 3 cut(s) 573, 755, 908
GlaI GCGC 1 cut(s) 1394
GluI GCNGC 3 cut(s) 103, 640, 786
GsaI CCCAGC 2 cut(s) 978, 1290
GsuI CTGGAG 1 cut(s) 898
HaeIII GGCC 2 cut(s) 102, 980
HapII CCGG 2 cut(s) 99, 710
HhaI GCGC 1 cut(s) 1395
Hin1II CATG 6 cut(s) 352, 380, 731, 1147, 1193, 1391
Hin6I GCGC 1 cut(s) 1393
HinP1I GCGC 1 cut(s) 1393
HincII GTYRAC 2 cut(s) 427, 515
HindII GTYRAC 2 cut(s) 427, 515
HinfI GANTC 6 cut(s) 182, 414, 882, 936, 1147, 1202
HpaI GTTAAC 1 cut(s) 427
HpaII CCGG 2 cut(s) 99, 710
HphI GGTGA 6 cut(s) 461, 1085, 1118, 1145, 1187, 1346
Hpy166II GTNNAC 5 cut(s) 175, 427, 515, 1043, 1375
Hpy188I TCNGA 9 cut(s) 36, 139, 187, 262, 491, 614, 904, 1423, 1452
Hpy188III TCNNGA 4 cut(s) 554, 710, 943, 1169
Hpy8I GTNNAC 5 cut(s) 175, 427, 515, 1043, 1375
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 7 cut(s) 496, 543, 547, 777, 940, 994, 1097
HpyCH4III ACNGT 7 cut(s) 71, 228, 424, 455, 895, 1040, 1294
HpyCH4IV ACGT 2 cut(s) 123, 1404
HpyCH4V TGCA 6 cut(s) 212, 411, 624, 785, 809, 1355
HpyF10VI GCNNNNNNNGC 5 cut(s) 648, 712, 986, 1075, 1352
HpyF3I CTNAG 7 cut(s) 111, 138, 584, 597, 611, 888, 903
HpySE526I ACGT 2 cut(s) 123, 1404
Hsp92II CATG 6 cut(s) 352, 380, 731, 1147, 1193, 1391
HspAI GCGC 1 cut(s) 1393
Kpn2I TCCGGA 1 cut(s) 709
Ksp22I TGATCA 2 cut(s) 736, 829
KspAI GTTAAC 1 cut(s) 427
LmnI GCTCC 6 cut(s) 145, 301, 373, 712, 878, 1006
Lsp1109I GCAGC 2 cut(s) 626, 797
LweI GCATC 5 cut(s) 157, 547, 901, 1056, 1225
MaeI CTAG 3 cut(s) 573, 755, 908
MaeII ACGT 2 cut(s) 123, 1404
MaeIII GTNAC 4 cut(s) 604, 677, 1023, 1405
MbiI CCGCTC 1 cut(s) 296
MboII GAAGA 6 cut(s) 200, 203, 222, 852, 931, 1355
MflI RGATCY 3 cut(s) 193, 277, 354
MhlI GDGCHC 2 cut(s) 243, 1011
MluCI AATT 6 cut(s) 15, 76, 320, 1161, 1245, 1324
MlyI GAGTC 2 cut(s) 876, 1211
MmeI TCCRAC 1 cut(s) 1234
MroI TCCGGA 1 cut(s) 709
MseI TTAA 6 cut(s) 47, 339, 426, 450, 824, 1304
MspI CCGG 2 cut(s) 99, 710
MspR9I CCNGG 2 cut(s) 522, 877
Mva1269I GAATGC 2 cut(s) 567, 1017
MvaI CCWGG 2 cut(s) 522, 877
MwoI GCNNNNNNNGC 5 cut(s) 648, 712, 986, 1075, 1352
NlaIII CATG 6 cut(s) 352, 380, 731, 1147, 1193, 1391
NlaIV GGNNCC 2 cut(s) 714, 979
NmuCI GTSAC 1 cut(s) 1023
NspI RCATGY 1 cut(s) 380
PaeI GCATGC 1 cut(s) 380
PctI GAATGC 2 cut(s) 567, 1017
PfeI GAWTC 4 cut(s) 182, 414, 936, 1147
PfoI TCCNGGA 1 cut(s) 875
PkrI GCNGC 3 cut(s) 104, 641, 787
PleI GAGTC 2 cut(s) 876, 1210
PpsI GAGTC 2 cut(s) 876, 1210
Ppu21I YACGTR 1 cut(s) 1405
PsiI TTATAA 1 cut(s) 1275
Psp124BI GAGCTC 1 cut(s) 243
Psp6I CCWGG 2 cut(s) 520, 875
PspFI CCCAGC 2 cut(s) 974, 1286
PspGI CCWGG 2 cut(s) 520, 875
PspN4I GGNNCC 2 cut(s) 714, 979
PspPI GGNCC 3 cut(s) 731, 978, 1043
PsrI GAACNNNNNNTAC 2 cut(s) 207, 239
PsuI RGATCY 3 cut(s) 193, 277, 354
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SacI GAGCTC 1 cut(s) 243
SaqAI TTAA 6 cut(s) 47, 339, 426, 450, 824, 1304
SatI GCNGC 3 cut(s) 103, 640, 786
Sau96I GGNCC 3 cut(s) 731, 978, 1043
SchI GAGTC 2 cut(s) 876, 1211
ScrFI CCNGG 2 cut(s) 522, 877
SduI GDGCHC 2 cut(s) 243, 1011
SfaNI GCATC 5 cut(s) 157, 547, 901, 1056, 1225
SfcI CTRYAG 1 cut(s) 300
SinI GGWCC 2 cut(s) 731, 1043
SmlI CTYRAG 2 cut(s) 58, 1151
SmoI CTYRAG 2 cut(s) 58, 1151
SnaBI TACGTA 1 cut(s) 1405
SphI GCATGC 1 cut(s) 380
Sse9I AATT 6 cut(s) 15, 76, 320, 1161, 1245, 1324
SsiI CCGC 4 cut(s) 103, 294, 1046, 1069
SspMI CTAG 3 cut(s) 573, 755, 908
SstI GAGCTC 1 cut(s) 243
StyD4I CCNGG 2 cut(s) 520, 875
StyI CCWWGG 2 cut(s) 747, 1119
TaaI ACNGT 7 cut(s) 71, 228, 424, 455, 895, 1040, 1294
TaiI ACGT 2 cut(s) 126, 1407
TaqI TCGA 2 cut(s) 1170, 1205
TasI AATT 6 cut(s) 15, 76, 320, 1161, 1245, 1324
TatI WGTACW 1 cut(s) 444
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 4 cut(s) 182, 414, 936, 1147
Tru1I TTAA 6 cut(s) 47, 339, 426, 450, 824, 1304
Tru9I TTAA 6 cut(s) 47, 339, 426, 450, 824, 1304
TscAI CASTG 1 cut(s) 1045
TseFI GTSAC 1 cut(s) 1023
TseI GCWGC 2 cut(s) 639, 785
Tsp45I GTSAC 1 cut(s) 1023
TspDTI ATGAA 6 cut(s) 17, 333, 529, 1160, 1295, 1376
TspRI CASTG 1 cut(s) 1045
VpaK11BI GGWCC 2 cut(s) 731, 1043
XapI RAATTY 2 cut(s) 76, 320
XceI RCATGY 1 cut(s) 380
XspI CTAG 3 cut(s) 573, 755, 908
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.