Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Reverse (-)

11437831 .. 11438286

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19230.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGCCGATCTCTCCTCCAATTCGTGGTGGGTGGGGCAATGTAGAGGTTACGCAGATTGGTGGGTTTAGTTTGATTTCGTTTGTGGACCGTCTCCGACCAAATCGAGCACAACTCAAAGCAGGTGTGTTGAAGAGATCTAATCCGATTTTATTAGAGATTGGGGGAGGTCCGGCGATACCACAGCGAGCTCACCTTCAAGGTTGTCACGGTACCAAGCTTCCACATGCGTTTGGATGGCGAGCGTACCGGTTTTTGGAGGGCTGGTTTGGATCGGTGGCCGAATTGGATCGTCCTTCAAGCCTTGATTCTGACAGCTTGCATACACAAATTGGCGGTGAACCAGGACAACTTGGGATGGAATCTCTCTGGCAAGAAGCTGCAACGCAATGGTTCTGTGGTACAATATGGATCCGGGCCTGGAGTCGGGTCAAGGTGTGGGATCCGGGCGGACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

152

Amino Acids

16.6

Weight (kDa)

9.23

Isoelectric Point (pI)

42.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	110
Acc36I	ACCTGC	1 cut(s)	110
Acc65I	GGTACC	1 cut(s)	209
AccB1I	GGYRCC	1 cut(s)	209
AccB7I	CCANNNNNTGG	1 cut(s)	23
AciI	CCGC	2 cut(s)	333, 447
AclWI	GGATC	6 cut(s)	277, 294, 403, 416, 434, 447
AcoI	YGGCCR	1 cut(s)	276
AfaI	GTAC	3 cut(s)	211, 245, 400
AfiI	CCNNNNNNNGG	3 cut(s)	23, 253, 423
AgeI	ACCGGT	1 cut(s)	246
AgsI	TTSAA	3 cut(s)	130, 197, 297
AjnI	CCWGG	2 cut(s)	340, 416
AluBI	AGCT	4 cut(s)	188, 217, 315, 377
AluI	AGCT	4 cut(s)	188, 217, 315, 377
Alw21I	GWGCWC	2 cut(s)	109, 190
Alw26I	GTCTC	1 cut(s)	95
AlwI	GGATC	6 cut(s)	277, 294, 403, 416, 434, 447
AoxI	GGCC	2 cut(s)	276, 414
ApeKI	GCWGC	1 cut(s)	377
AsiGI	ACCGGT	1 cut(s)	246
Asp718I	GGTACC	1 cut(s)	209
AspS9I	GGNCC	4 cut(s)	85, 167, 414, 449
AsuC2I	CCSGG	2 cut(s)	413, 444
AsuHPI	GGTGA	2 cut(s)	182, 347
AvaII	GGWCC	3 cut(s)	85, 167, 449
BamHI	GGATCC	2 cut(s)	408, 439
BanI	GGYRCC	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	190
Bbv12I	GWGCWC	2 cut(s)	109, 190
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	228, 349
BciT130I	CCWGG	2 cut(s)	342, 418
BcnI	CCSGG	2 cut(s)	413, 444
BcoDI	GTCTC	1 cut(s)	95
BfuAI	ACCTGC	1 cut(s)	110
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
Bme1390I	CCNGG	4 cut(s)	342, 413, 418, 444
Bme18I	GGWCC	3 cut(s)	85, 167, 449
BmgT120I	GGNCC	4 cut(s)	85, 167, 414, 449
BmiI	GGNNCC	3 cut(s)	211, 410, 441
BmrFI	CCNGG	4 cut(s)	342, 413, 418, 444
BplI	GAGNNNNNCTC	2 cut(s)	96, 128
BpmI	CTGGAG	1 cut(s)	439
BpuMI	CCSGG	2 cut(s)	413, 444
BsaWI	WCCGGW	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	248, 278
Bsc4I	CCNNNNNNNGG	3 cut(s)	23, 253, 423
Bse118I	RCCGGY	1 cut(s)	246
Bse3DI	GCAATG	2 cut(s)	43, 392
BseBI	CCWGG	2 cut(s)	342, 418
BseGI	GGATG	2 cut(s)	239, 360
BseLI	CCNNNNNNNGG	3 cut(s)	23, 253, 423
BseMI	GCAATG	2 cut(s)	43, 392
BseXI	GCAGC	1 cut(s)	364
BshFI	GGCC	2 cut(s)	278, 416
BshNI	GGYRCC	1 cut(s)	209
BshTI	ACCGGT	1 cut(s)	246
BsiHKAI	GWGCWC	2 cut(s)	109, 190
BsiSI	CCGG	4 cut(s)	170, 247, 412, 443
BslI	CCNNNNNNNGG	3 cut(s)	23, 253, 423
BsmAI	GTCTC	1 cut(s)	95
BsmBI	CGTCTC	1 cut(s)	95
BsnI	GGCC	2 cut(s)	278, 416
Bsp1286I	GDGCHC	2 cut(s)	109, 190
Bsp143I	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
BspACI	CCGC	2 cut(s)	333, 447
BspANI	GGCC	2 cut(s)	278, 416
BspLI	GGNNCC	3 cut(s)	211, 410, 441
BspMI	ACCTGC	1 cut(s)	110
BspPI	GGATC	6 cut(s)	277, 294, 403, 416, 434, 447
BspT107I	GGYRCC	1 cut(s)	209
BsrDI	GCAATG	2 cut(s)	43, 392
BsrFI	RCCGGY	1 cut(s)	246
BssAI	RCCGGY	1 cut(s)	246
BssMI	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
Bst2UI	CCWGG	2 cut(s)	342, 418
Bst4CI	ACNGT	2 cut(s)	89, 209
Bst6I	CTCTTC	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	186, 240, 317
BstDEI	CTNAG	1 cut(s)	453
BstF5I	GGATG	2 cut(s)	239, 360
BstKTI	GATC	6 cut(s)	9, 137, 272, 289, 411, 442
BstMAI	GTCTC	1 cut(s)	95
BstMBI	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
BstNI	CCWGG	2 cut(s)	342, 418
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	4 cut(s)	340, 411, 416, 442
BstV1I	GCAGC	1 cut(s)	364
BstX2I	RGATCY	3 cut(s)	134, 408, 439
BstYI	RGATCY	3 cut(s)	134, 408, 439
BsuRI	GGCC	2 cut(s)	278, 416
BtsCI	GGATG	2 cut(s)	239, 360
BveI	ACCTGC	1 cut(s)	110
Cac8I	GCNNGC	3 cut(s)	186, 240, 317
Cfr10I	RCCGGY	1 cut(s)	246
Cfr13I	GGNCC	4 cut(s)	85, 167, 414, 449
Csp6I	GTAC	3 cut(s)	210, 244, 399
CspAI	ACCGGT	1 cut(s)	246
CviAII	CATG	1 cut(s)	224
CviJI	RGCY	8 cut(s)	188, 217, 261, 278, 300, 315, 377, 416
CviKI_1	RGCY	8 cut(s)	188, 217, 261, 278, 300, 315, 377, 416
CviQI	GTAC	3 cut(s)	210, 244, 399
DdeI	CTNAG	1 cut(s)	453
DpnI	GATC	6 cut(s)	8, 136, 271, 288, 410, 441
DpnII	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
EaeI	YGGCCR	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
Ecl136II	GAGCTC	1 cut(s)	188
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	3 cut(s)	85, 167, 449
Eco53kI	GAGCTC	1 cut(s)	188
EcoICRI	GAGCTC	1 cut(s)	188
EcoRII	CCWGG	2 cut(s)	340, 416
EcoT38I	GRGCYC	1 cut(s)	190
Esp3I	CGTCTC	1 cut(s)	95
FaeI	CATG	1 cut(s)	227
FaiI	YATR	3 cut(s)	225, 321, 406
FatI	CATG	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	378
FokI	GGATG	2 cut(s)	246, 367
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	439
HaeIII	GGCC	2 cut(s)	278, 416
HapII	CCGG	4 cut(s)	170, 247, 412, 443
Hin1II	CATG	1 cut(s)	227
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	3 cut(s)	305, 359, 421
HpaII	CCGG	4 cut(s)	170, 247, 412, 443
HphI	GGTGA	2 cut(s)	182, 347
Hpy166II	GTNNAC	2 cut(s)	85, 338
Hpy188I	TCNGA	3 cut(s)	95, 144, 310
Hpy8I	GTNNAC	2 cut(s)	85, 338
HpyAV	CCTTC	2 cut(s)	203, 303
HpyCH4III	ACNGT	2 cut(s)	89, 209
HpyCH4V	TGCA	2 cut(s)	319, 380
HpyF3I	CTNAG	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	227
KpnI	GGTACC	1 cut(s)	213
Kzo9I	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
Lsp1109I	GCAGC	1 cut(s)	364
MaeIII	GTNAC	2 cut(s)	46, 203
MalI	GATC	6 cut(s)	8, 136, 271, 288, 410, 441
MboI	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
MboII	GAAGA	1 cut(s)	142
MflI	RGATCY	3 cut(s)	134, 408, 439
MhlI	GDGCHC	2 cut(s)	109, 190
MluCI	AATT	3 cut(s)	18, 281, 327
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	118
MnlI	CCTC	4 cut(s)	24, 37, 158, 250
MspI	CCGG	4 cut(s)	170, 247, 412, 443
MspR9I	CCNGG	4 cut(s)	342, 413, 418, 444
MvaI	CCWGG	2 cut(s)	342, 418
NciI	CCSGG	2 cut(s)	413, 444
NdeII	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
NlaIII	CATG	1 cut(s)	227
NlaIV	GGNNCC	3 cut(s)	211, 410, 441
NmuCI	GTSAC	1 cut(s)	203
NspI	RCATGY	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	110
PfeI	GAWTC	2 cut(s)	305, 359
PflMI	CCANNNNNTGG	1 cut(s)	23
PinAI	ACCGGT	1 cut(s)	246
PkrI	GCNGC	1 cut(s)	379
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
Psp124BI	GAGCTC	1 cut(s)	190
Psp6I	CCWGG	2 cut(s)	340, 416
PspGI	CCWGG	2 cut(s)	340, 416
PspN4I	GGNNCC	3 cut(s)	211, 410, 441
PspPI	GGNCC	4 cut(s)	85, 167, 414, 449
PsuI	RGATCY	3 cut(s)	134, 408, 439
RsaI	GTAC	3 cut(s)	211, 245, 400
RsaNI	GTAC	3 cut(s)	210, 244, 399
SacI	GAGCTC	1 cut(s)	190
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	6 cut(s)	6, 134, 269, 286, 408, 439
Sau96I	GGNCC	4 cut(s)	85, 167, 414, 449
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	4 cut(s)	342, 413, 418, 444
SduI	GDGCHC	2 cut(s)	109, 190
SinI	GGWCC	3 cut(s)	85, 167, 449
Sse9I	AATT	3 cut(s)	18, 281, 327
SsiI	CCGC	2 cut(s)	333, 447
SstI	GAGCTC	1 cut(s)	190
StyD4I	CCNGG	4 cut(s)	340, 411, 416, 442
TaaI	ACNGT	2 cut(s)	89, 209
TaqI	TCGA	1 cut(s)	103
TasI	AATT	3 cut(s)	18, 281, 327
TfiI	GAWTC	2 cut(s)	305, 359
TseFI	GTSAC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	203
Van91I	CCANNNNNTGG	1 cut(s)	23
VpaK11BI	GGWCC	3 cut(s)	85, 167, 449
XceI	RCATGY	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.