Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Reverse (-)

58306313 .. 58307752

Gene Structure 1440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGAGATACTTCCAAGTTTCGGCCTCTGTGTGTTGGCTCTTGCCGTTCTCAATGGCAGACTGTTATTTGAGGAGAGTTTTGGCGTTGGGGTGGTCATGCCTGTGAGCCAAAGGGTTTTTGAAGCGGTGAATGAAGGCGACGGTGGTTGTTGGAAGGAGTGGGATCCGGGTAGAGGGTTGAATCTGCTCCCTCTCTCTCACGGTTGTCTTAGCGGGTCCAATTATTCCTGTGTTGATGGCGCGATGAGAAGGCTATGGTCCTGTAGAGTGGGCTTGAGCTTTCTCCAACCGGATCTTCTGAGATCAATGCAGCCTGTTTGTGGGTTGGTGTTTGCTGAGGATTCCGTTAGTTTCAGGGCAAGCGGTGATCTCCGGCGTTGGCATAGTAGGCGAGGTGGTGTAGGCTATTGTTCATCGTGTGGTGGAGCGGCGGTCTTTTCGTGCGCAGGTGACAAAAGTCTTGACTACCGTGTTGACTGGAATTCTAGGAGAATACCTTGTTGGCCTTGGGTTCAATCAACCTTCCCATTATCATTGGGAATAGCCGGAAGCACGAACCAGGATGATCATTTGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

193

Amino Acids

20.94

Weight (kDa)

6.28

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	437
Acc16I	TGCGCA	1 cut(s)	445
Acc36I	ACCTGC	1 cut(s)	437
AccBSI	CCGCTC	1 cut(s)	428
AccII	CGCG	1 cut(s)	242
AciI	CCGC	5 cut(s)	125, 213, 363, 428, 431
AclWI	GGATC	3 cut(s)	158, 171, 300
AcsI	RAATTY	1 cut(s)	481
AfiI	CCNNNNNNNGG	3 cut(s)	20, 173, 320
AgsI	TTSAA	3 cut(s)	122, 181, 515
AjnI	CCWGG	1 cut(s)	558
AjuI	GAANNNNNNNTTGG	4 cut(s)	279, 311, 484, 516
AluBI	AGCT	1 cut(s)	279
AluI	AGCT	1 cut(s)	279
AlwI	GGATC	3 cut(s)	158, 171, 300
AoxI	GGCC	2 cut(s)	22, 503
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	1 cut(s)	481
AspLEI	GCGC	2 cut(s)	242, 446
AspS9I	GGNCC	2 cut(s)	216, 258
AsuC2I	CCSGG	1 cut(s)	168
AsuHPI	GGTGA	3 cut(s)	139, 377, 461
AvaII	GGWCC	2 cut(s)	216, 258
BamHI	GGATCC	1 cut(s)	163
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	1 cut(s)	560
BclI	TGATCA	1 cut(s)	565
BcnI	CCSGG	1 cut(s)	168
BfaI	CTAG	1 cut(s)	486
BfmI	CTRYAG	1 cut(s)	262
BfuAI	ACCTGC	1 cut(s)	437
BisI	GCNGC	2 cut(s)	311, 429
BlsI	GCNGC	2 cut(s)	312, 430
Bme1390I	CCNGG	2 cut(s)	168, 560
Bme18I	GGWCC	2 cut(s)	216, 258
BmgT120I	GGNCC	2 cut(s)	216, 258
BmiI	GGNNCC	2 cut(s)	165, 217
BmrFI	CCNGG	2 cut(s)	168, 560
BoxI	GACNNNNGTC	1 cut(s)	456
Bpu10I	CCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	295
BpuMI	CCSGG	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	506
BsaWI	WCCGGW	1 cut(s)	289
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bsc4I	CCNNNNNNNGG	3 cut(s)	20, 173, 320
Bse1I	ACTGG	1 cut(s)	482
BseBI	CCWGG	1 cut(s)	560
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	1 cut(s)	568
BseLI	CCNNNNNNNGG	3 cut(s)	20, 173, 320
BseMII	CTCAG	2 cut(s)	290, 327
BseNI	ACTGG	1 cut(s)	482
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	1 cut(s)	322
Bsh1236I	CGCG	1 cut(s)	242
BshFI	GGCC	2 cut(s)	24, 505
BsiSI	CCGG	4 cut(s)	167, 290, 373, 546
BslI	CCNNNNNNNGG	3 cut(s)	20, 173, 320
BsnI	GGCC	2 cut(s)	24, 505
Bsp143I	GATC	5 cut(s)	163, 292, 302, 367, 565
BspACI	CCGC	5 cut(s)	125, 213, 363, 428, 431
BspANI	GGCC	2 cut(s)	24, 505
BspCNI	CTCAG	2 cut(s)	291, 328
BspFNI	CGCG	1 cut(s)	242
BspLI	GGNNCC	2 cut(s)	165, 217
BspMI	ACCTGC	1 cut(s)	437
BspPI	GGATC	3 cut(s)	158, 171, 300
BsrBI	CCGCTC	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	482
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	5 cut(s)	163, 292, 302, 367, 565
BssT1I	CCWWGG	1 cut(s)	506
Bst2UI	CCWGG	1 cut(s)	560
Bst4CI	ACNGT	4 cut(s)	63, 143, 203, 470
BstC8I	GCNNGC	1 cut(s)	361
BstDEI	CTNAG	3 cut(s)	209, 299, 336
BstF5I	GGATG	1 cut(s)	568
BstFNI	CGCG	1 cut(s)	242
BstHHI	GCGC	2 cut(s)	242, 446
BstKTI	GATC	5 cut(s)	166, 295, 305, 370, 568
BstMBI	GATC	5 cut(s)	163, 292, 302, 367, 565
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	1 cut(s)	560
BstPAI	GACNNNNGTC	1 cut(s)	456
BstSCI	CCNGG	2 cut(s)	166, 558
BstSFI	CTRYAG	1 cut(s)	262
BstUI	CGCG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	2 cut(s)	163, 292
BstYI	RGATCY	2 cut(s)	163, 292
BsuRI	GGCC	2 cut(s)	24, 505
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	568
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	1 cut(s)	361
CfoI	GCGC	2 cut(s)	242, 446
Cfr13I	GGNCC	2 cut(s)	216, 258
CviAII	CATG	1 cut(s)	97
DdeI	CTNAG	3 cut(s)	209, 299, 336
DpnI	GATC	5 cut(s)	165, 294, 304, 369, 567
DpnII	GATC	5 cut(s)	163, 292, 302, 367, 565
Eco130I	CCWWGG	1 cut(s)	506
Eco47I	GGWCC	2 cut(s)	216, 258
EcoRI	GAATTC	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	558
EcoT14I	CCWWGG	1 cut(s)	506
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	1 cut(s)	100
FaiI	YATR	4 cut(s)	98, 256, 384, 577
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	206
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	2 cut(s)	311, 429
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	2 cut(s)	311, 429
FspBI	CTAG	1 cut(s)	486
FspI	TGCGCA	1 cut(s)	445
GlaI	GCGC	2 cut(s)	241, 445
GluI	GCNGC	2 cut(s)	311, 429
HaeIII	GGCC	2 cut(s)	24, 505
HapII	CCGG	4 cut(s)	167, 290, 373, 546
HhaI	GCGC	2 cut(s)	242, 446
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	2 cut(s)	240, 444
HinP1I	GCGC	2 cut(s)	240, 444
HincII	GTYRAC	1 cut(s)	475
HindII	GTYRAC	1 cut(s)	475
HinfI	GANTC	2 cut(s)	181, 341
HpaII	CCGG	4 cut(s)	167, 290, 373, 546
HphI	GGTGA	3 cut(s)	139, 377, 461
Hpy166II	GTNNAC	1 cut(s)	475
Hpy188I	TCNGA	1 cut(s)	300
Hpy188III	TCNNGA	1 cut(s)	461
Hpy8I	GTNNAC	1 cut(s)	475
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	4 cut(s)	128, 148, 243, 532
HpyCH4III	ACNGT	4 cut(s)	63, 143, 203, 470
HpyCH4V	TGCA	1 cut(s)	310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	3 cut(s)	209, 299, 336
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	2 cut(s)	240, 444
Ksp22I	TGATCA	1 cut(s)	565
Kzo9I	GATC	5 cut(s)	163, 292, 302, 367, 565
LmnI	GCTCC	2 cut(s)	192, 425
Lsp1109I	GCAGC	1 cut(s)	322
MaeI	CTAG	1 cut(s)	486
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	5 cut(s)	165, 294, 304, 369, 567
MbiI	CCGCTC	1 cut(s)	428
MboI	GATC	5 cut(s)	163, 292, 302, 367, 565
MboII	GAAGA	1 cut(s)	287
MflI	RGATCY	2 cut(s)	163, 292
MluCI	AATT	2 cut(s)	220, 481
MmeI	TCCRAC	2 cut(s)	131, 310
MnlI	CCTC	6 cut(s)	35, 64, 167, 201, 331, 386
MslI	CAYNNNNRTG	1 cut(s)	101
MspI	CCGG	4 cut(s)	167, 290, 373, 546
MspR9I	CCNGG	2 cut(s)	168, 560
MvaI	CCWGG	1 cut(s)	560
MvnI	CGCG	1 cut(s)	242
MwoI	GCNNNNNNNGC	1 cut(s)	388
NciI	CCSGG	1 cut(s)	168
NdeII	GATC	5 cut(s)	163, 292, 302, 367, 565
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	165, 217
NmuCI	GTSAC	1 cut(s)	449
NsbI	TGCGCA	1 cut(s)	445
PaqCI	CACCTGC	1 cut(s)	437
PfeI	GAWTC	2 cut(s)	181, 341
PkrI	GCNGC	2 cut(s)	312, 430
PshAI	GACNNNNGTC	1 cut(s)	456
Psp6I	CCWGG	1 cut(s)	558
PspGI	CCWGG	1 cut(s)	558
PspN4I	GGNNCC	2 cut(s)	165, 217
PspPI	GGNCC	2 cut(s)	216, 258
PsuI	RGATCY	2 cut(s)	163, 292
RseI	CAYNNNNRTG	1 cut(s)	101
SatI	GCNGC	2 cut(s)	311, 429
Sau3AI	GATC	5 cut(s)	163, 292, 302, 367, 565
Sau96I	GGNCC	2 cut(s)	216, 258
ScrFI	CCNGG	2 cut(s)	168, 560
SetI	ASST	5 cut(s)	281, 397, 451, 499, 524
SfcI	CTRYAG	1 cut(s)	262
SinI	GGWCC	2 cut(s)	216, 258
SmiMI	CAYNNNNRTG	1 cut(s)	101
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
Sse9I	AATT	2 cut(s)	220, 481
SsiI	CCGC	5 cut(s)	125, 213, 363, 428, 431
SspMI	CTAG	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	166, 558
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	4 cut(s)	63, 143, 203, 470
TasI	AATT	2 cut(s)	220, 481
TauI	GCSGC	1 cut(s)	431
TfiI	GAWTC	2 cut(s)	181, 341
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	2 cut(s)	147, 402
TspGWI	ACGGA	1 cut(s)	334
VpaK11BI	GGWCC	2 cut(s)	216, 258
XapI	RAATTY	1 cut(s)	481
XspI	CTAG	1 cut(s)	486

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.