Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

13969182 .. 13970019

Gene Structure 838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g22602.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGTACATCTGTGGCATCATCCTCGACGGCATCACCTGTGTGCATGGCTTCAATCTTGCCTCCTTATCCGTCATGACAAGCATGCTTCTCGGCGACGGAAATATGTTGTCCTCCTCTCGTTCATGGTGGTTGGGGTGGAAAAGAATCTGCACCAGCGGCGAGAAAGCGTTTATTGGAGTGGTGGTTGTTTGCTGTGAAGGCGGTTGGGAGATGGTTATTTCGGTGACCGGTTTCGATGATGGGTTTTTGTGGGACTTAGGACTGGCAGCGGTGATTCAGTTGGAACCTAGGTCGGGGCGTCTGGGCGCAGTTGTGTGTGCTGGGTCAGATCTAGATCCGGGCCTAGGGCAAGGATCGTCTGCCATCACTGCCATGTCTGGAATCACCTTTGGCCGGCTTCGATTCTTCATGTGGAAGATTACCTTTAGCCCGATGCCGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.85

Weight (kDa)

4.93

Isoelectric Point (pI)

38.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	159, 204, 272, 440
AclWI	GGATC	2 cut(s)	332, 364
AcoI	YGGCCR	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	301
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	3 cut(s)	296, 347, 396
AgeI	ACCGGT	1 cut(s)	230
AgsI	TTSAA	1 cut(s)	55
AleI	CACNNNNGTG	1 cut(s)	41
AlwI	GGATC	2 cut(s)	332, 364
AoxI	GGCC	2 cut(s)	343, 394
ApeKI	GCWGC	1 cut(s)	269
AsiGI	ACCGGT	1 cut(s)	230
AspA2I	CCTAGG	2 cut(s)	290, 346
AspLEI	GCGC	1 cut(s)	311
AspS9I	GGNCC	1 cut(s)	343
AsuC2I	CCSGG	1 cut(s)	342
AsuHPI	GGTGA	4 cut(s)	28, 238, 286, 379
AvrII	CCTAGG	2 cut(s)	290, 346
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	3 cut(s)	208, 236, 374
BceAI	ACGGC	1 cut(s)	46
BcgI	CGANNNNNNTGC	4 cut(s)	7, 41, 73, 107
BcnI	CCSGG	1 cut(s)	342
BfaI	CTAG	3 cut(s)	291, 335, 347
BglII	AGATCT	1 cut(s)	331
BisI	GCNGC	3 cut(s)	160, 270, 440
BlnI	CCTAGG	2 cut(s)	290, 346
BlsI	GCNGC	3 cut(s)	161, 271, 441
Bme1390I	CCNGG	1 cut(s)	342
BmgT120I	GGNCC	1 cut(s)	343
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	342
BmsI	GCATC	3 cut(s)	27, 42, 426
BpuMI	CCSGG	1 cut(s)	342
BsaBI	GATNNNNATC	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	290, 346
BsaWI	WCCGGW	1 cut(s)	230
BsaXI	ACNNNNNCTCC	2 cut(s)	171, 201
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 347, 396
Bse118I	RCCGGY	2 cut(s)	230, 396
Bse1I	ACTGG	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	290, 346
BseGI	GGATG	1 cut(s)	21
BseJI	GATNNNNATC	1 cut(s)	336
BseLI	CCNNNNNNNGG	3 cut(s)	296, 347, 396
BseNI	ACTGG	1 cut(s)	270
BseRI	GAGGAG	1 cut(s)	106
BseXI	GCAGC	1 cut(s)	281
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	136
BshFI	GGCC	2 cut(s)	345, 396
BshTI	ACCGGT	1 cut(s)	230
BsiSI	CCGG	3 cut(s)	231, 341, 397
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	3 cut(s)	296, 347, 396
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	345, 396
Bsp143I	GATC	3 cut(s)	331, 337, 356
BspACI	CCGC	4 cut(s)	159, 204, 272, 440
BspANI	GGCC	2 cut(s)	345, 396
BspHI	TCATGA	1 cut(s)	75
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	332, 364
BsrFI	RCCGGY	2 cut(s)	230, 396
BsrI	ACTGG	1 cut(s)	270
BssAI	RCCGGY	2 cut(s)	230, 396
BssECI	CCNNGG	2 cut(s)	290, 346
BssMI	GATC	3 cut(s)	331, 337, 356
BssNI	GRCGYC	1 cut(s)	301
BssT1I	CCWWGG	2 cut(s)	290, 346
BstACI	GRCGYC	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	86, 398
BstDEI	CTNAG	1 cut(s)	259
BstEII	GGTNACC	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	21
BstHHI	GCGC	1 cut(s)	311
BstKTI	GATC	3 cut(s)	334, 340, 359
BstMBI	GATC	3 cut(s)	331, 337, 356
BstMWI	GCNNNNNNNGC	3 cut(s)	159, 201, 371
BstNSI	RCATGY	1 cut(s)	88
BstPI	GGTNACC	1 cut(s)	226
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	1 cut(s)	281
BstX2I	RGATCY	2 cut(s)	331, 337
BstYI	RGATCY	2 cut(s)	331, 337
BsuRI	GGCC	2 cut(s)	345, 396
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	86, 398
CciI	TCATGA	1 cut(s)	75
CfoI	GCGC	1 cut(s)	311
Cfr10I	RCCGGY	2 cut(s)	230, 396
Cfr13I	GGNCC	1 cut(s)	343
CseI	GACGC	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	7
CspAI	ACCGGT	1 cut(s)	230
CviAII	CATG	6 cut(s)	47, 76, 85, 126, 376, 412
CviJI	RGCY	5 cut(s)	51, 345, 396, 400, 432
CviKI_1	RGCY	5 cut(s)	51, 345, 396, 400, 432
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	3 cut(s)	333, 339, 358
DpnII	GATC	3 cut(s)	331, 337, 356
EaeI	YGGCCR	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	290, 346
Eco91I	GGTNACC	1 cut(s)	226
EcoO65I	GGTNACC	1 cut(s)	226
EcoT14I	CCWWGG	2 cut(s)	290, 346
ErhI	CCWWGG	2 cut(s)	290, 346
FaeI	CATG	6 cut(s)	50, 79, 88, 129, 379, 415
FaiI	YATR	8 cut(s)	48, 77, 86, 107, 127, 377, 413, 445
FalI	AAGNNNNNCTT	2 cut(s)	410, 442
FaqI	GGGAC	1 cut(s)	269
FatI	CATG	6 cut(s)	46, 75, 84, 125, 375, 411
Fnu4HI	GCNGC	3 cut(s)	160, 270, 440
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	3 cut(s)	160, 270, 440
FspBI	CTAG	3 cut(s)	291, 335, 347
GlaI	GCGC	1 cut(s)	310
GluI	GCNGC	3 cut(s)	160, 270, 440
GsaI	CCCAGC	1 cut(s)	327
HaeIII	GGCC	2 cut(s)	345, 396
HapII	CCGG	3 cut(s)	231, 341, 397
HgaI	GACGC	1 cut(s)	290
HhaI	GCGC	1 cut(s)	311
Hin1I	GRCGYC	1 cut(s)	301
Hin1II	CATG	6 cut(s)	50, 79, 88, 129, 379, 415
Hin6I	GCGC	1 cut(s)	309
HinP1I	GCGC	1 cut(s)	309
HinfI	GANTC	4 cut(s)	147, 277, 384, 405
HpaII	CCGG	3 cut(s)	231, 341, 397
HphI	GGTGA	4 cut(s)	28, 238, 286, 379
Hpy188I	TCNGA	1 cut(s)	331
Hpy188III	TCNNGA	3 cut(s)	76, 335, 381
Hpy99I	CGWCG	2 cut(s)	32, 101
HpyAV	CCTTC	1 cut(s)	194
HpyCH4V	TGCA	2 cut(s)	46, 153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	159, 201, 371
HpyF3I	CTNAG	1 cut(s)	259
Hsp92I	GRCGYC	1 cut(s)	301
Hsp92II	CATG	6 cut(s)	50, 79, 88, 129, 379, 415
HspAI	GCGC	1 cut(s)	309
KroI	GCCGGC	1 cut(s)	396
KroNI	GCCGGC	1 cut(s)	398
Kzo9I	GATC	3 cut(s)	331, 337, 356
LpnPI	CCDG	9 cut(s)	52, 169, 244, 251, 290, 309, 354, 366, 410
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	3 cut(s)	27, 42, 426
MaeI	CTAG	3 cut(s)	291, 335, 347
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	3 cut(s)	333, 339, 358
MboI	GATC	3 cut(s)	331, 337, 356
MboII	GAAGA	2 cut(s)	400, 430
MflI	RGATCY	2 cut(s)	331, 337
MmeI	TCCRAC	1 cut(s)	264
MnlI	CCTC	4 cut(s)	35, 73, 124, 127
MroNI	GCCGGC	1 cut(s)	396
MslI	CAYNNNNRTG	2 cut(s)	41, 374
MspA1I	CMGCKG	2 cut(s)	159, 272
MspI	CCGG	3 cut(s)	231, 341, 397
MspR9I	CCNGG	1 cut(s)	342
MwoI	GCNNNNNNNGC	3 cut(s)	159, 201, 371
NaeI	GCCGGC	1 cut(s)	398
NciI	CCSGG	1 cut(s)	342
NdeII	GATC	3 cut(s)	331, 337, 356
NgoMIV	GCCGGC	1 cut(s)	396
NlaIII	CATG	6 cut(s)	50, 79, 88, 129, 379, 415
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	88
OliI	CACNNNNGTG	1 cut(s)	41
PaeI	GCATGC	1 cut(s)	88
PagI	TCATGA	1 cut(s)	75
PdiI	GCCGGC	1 cut(s)	398
PfeI	GAWTC	4 cut(s)	147, 277, 384, 405
PinAI	ACCGGT	1 cut(s)	230
PkrI	GCNGC	3 cut(s)	161, 271, 441
PspEI	GGTNACC	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	323
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	343
PsuI	RGATCY	2 cut(s)	331, 337
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	41, 374
SatI	GCNGC	3 cut(s)	160, 270, 440
Sau3AI	GATC	3 cut(s)	331, 337, 356
Sau96I	GGNCC	1 cut(s)	343
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	5 cut(s)	41, 292, 296, 392, 428
SfaNI	GCATC	3 cut(s)	27, 42, 426
SmiMI	CAYNNNNRTG	2 cut(s)	41, 374
SphI	GCATGC	1 cut(s)	88
SsiI	CCGC	4 cut(s)	159, 204, 272, 440
SspMI	CTAG	3 cut(s)	291, 335, 347
StyD4I	CCNGG	1 cut(s)	340
StyI	CCWWGG	2 cut(s)	290, 346
TaqI	TCGA	3 cut(s)	27, 237, 403
TatI	WGTACW	1 cut(s)	6
TauI	GCSGC	2 cut(s)	162, 442
TfiI	GAWTC	4 cut(s)	147, 277, 384, 405
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	269
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	2 cut(s)	114, 400
TspGWI	ACGGA	2 cut(s)	61, 114
TspRI	CASTG	1 cut(s)	376
XbaI	TCTAGA	1 cut(s)	334
XceI	RCATGY	1 cut(s)	88
XmaJI	CCTAGG	2 cut(s)	290, 346
XspI	CTAG	3 cut(s)	291, 335, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.