Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Reverse (-)

17181134 .. 17181475

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG135400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCCGGCGAGCCAAAGGAATTTTGGATTGACAAAGGAAGGCAGCGGTGGTTGTCGGAAGGAGTGGGATCTGGGTAGTGGGTTGAATATGTTCCCTCTATCTCACGGTGGTCTTAGCCAGTCATACCATTCTGGAGCTAACGCTGCGATGAGTGGGCTATGGTCTGGTGTAGGTGACCTTGTTTGGGTAGTCGGCGATCTTCGAGATCTGCGTGGTGAGGTAGATGACGGCCCTTTGATTGGAGGCATGGCGGAGACGGATACCGGGTGTGTCGTCGGCGGTAAGGTCAATTGTCCAGATGCTTTGGGTATGGGGCGAAGACCTAGTGGGTTCTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

11.7

Weight (kDa)

5.15

Isoelectric Point (pI)

35.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	45, 251, 279
AclWI	GGATC	1 cut(s)	75
AcsI	RAATTY	1 cut(s)	19
AfiI	CCNNNNNNNGG	2 cut(s)	184, 239
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	75
AoxI	GGCC	1 cut(s)	229
ApeKI	GCWGC	2 cut(s)	42, 143
ApoI	RAATTY	1 cut(s)	19
Asp700I	GAANNNNTTC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	230
AsuC2I	CCSGG	1 cut(s)	265
AsuHPI	GGTGA	2 cut(s)	185, 227
BbsI	GAAGAC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	54, 130
BceAI	ACGGC	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	265
BcoDI	GTCTC	1 cut(s)	248
BfaI	CTAG	1 cut(s)	324
BfuI	GTATCC	1 cut(s)	253
BglII	AGATCT	1 cut(s)	205
BisI	GCNGC	2 cut(s)	43, 144
BlsI	GCNGC	2 cut(s)	44, 145
Bme1390I	CCNGG	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	1 cut(s)	265
BmsI	GCATC	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 239
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	2 cut(s)	184, 239
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	2 cut(s)	54, 130
BshFI	GGCC	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	5, 264
BslI	CCNNNNNNNGG	2 cut(s)	184, 239
BsmAI	GTCTC	1 cut(s)	248
BsmBI	CGTCTC	1 cut(s)	248
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	3 cut(s)	67, 196, 205
BspACI	CCGC	3 cut(s)	45, 251, 279
BspANI	GGCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	75
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	4
BssMI	GATC	3 cut(s)	67, 196, 205
Bst4CI	ACNGT	1 cut(s)	107
BstC8I	GCNNGC	2 cut(s)	6, 10
BstDEI	CTNAG	1 cut(s)	113
BstEII	GGTNACC	1 cut(s)	173
BstKTI	GATC	3 cut(s)	70, 199, 208
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	3 cut(s)	67, 196, 205
BstMWI	GCNNNNNNNGC	1 cut(s)	143
BstPI	GGTNACC	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	54, 130
BstV2I	GAAGAC	1 cut(s)	325
BstX2I	RGATCY	2 cut(s)	67, 205
BstYI	RGATCY	2 cut(s)	67, 205
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	1 cut(s)	231
BtgZI	GCGATG	1 cut(s)	161
Cac8I	GCNNGC	2 cut(s)	6, 10
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	1 cut(s)	230
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	6 cut(s)	12, 117, 137, 157, 231, 338
CviKI_1	RGCY	6 cut(s)	12, 117, 137, 157, 231, 338
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	3 cut(s)	69, 198, 207
DpnII	GATC	3 cut(s)	67, 196, 205
EciI	GGCGGA	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	248
FaeI	CATG	1 cut(s)	250
FaiI	YATR	5 cut(s)	89, 124, 160, 248, 311
FatI	CATG	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	43, 144
Fsp4HI	GCNGC	2 cut(s)	43, 144
FspBI	CTAG	1 cut(s)	324
GluI	GCNGC	2 cut(s)	43, 144
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	2 cut(s)	5, 264
Hin1II	CATG	1 cut(s)	250
HpaII	CCGG	2 cut(s)	5, 264
HphI	GGTGA	2 cut(s)	185, 227
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	3 cut(s)	132, 203, 296
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	2 cut(s)	32, 52
HpyCH4III	ACNGT	1 cut(s)	107
HpyF10VI	GCNNNNNNNGC	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	250
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	3 cut(s)	67, 196, 205
LmnI	GCTCC	1 cut(s)	134
LpnPI	CCDG	8 cut(s)	18, 56, 117, 131, 150, 277, 309, 319
Lsp1109I	GCAGC	2 cut(s)	54, 130
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	324
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	69, 198, 207
MboI	GATC	3 cut(s)	67, 196, 205
MboII	GAAGA	2 cut(s)	191, 330
MfeI	CAATTG	1 cut(s)	289
MflI	RGATCY	2 cut(s)	67, 205
MluCI	AATT	2 cut(s)	19, 289
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	3 cut(s)	105, 211, 236
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	1 cut(s)	340
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	2 cut(s)	5, 264
MspR9I	CCNGG	1 cut(s)	265
MunI	CAATTG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	143
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	3 cut(s)	67, 196, 205
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	173
PcsI	WCGNNNNNNNCGW	1 cut(s)	208
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	44, 145
PspEI	GGTNACC	1 cut(s)	173
PspPI	GGNCC	1 cut(s)	230
PsuI	RGATCY	2 cut(s)	67, 205
SaqAI	TTAA	1 cut(s)	340
SatI	GCNGC	2 cut(s)	43, 144
Sau3AI	GATC	3 cut(s)	67, 196, 205
Sau96I	GGNCC	1 cut(s)	230
ScrFI	CCNGG	1 cut(s)	265
SetI	ASST	6 cut(s)	139, 175, 180, 222, 288, 325
SfaNI	GCATC	1 cut(s)	289
Sse9I	AATT	2 cut(s)	19, 289
SsiI	CCGC	3 cut(s)	45, 251, 279
SspMI	CTAG	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	263
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	202
TasI	AATT	2 cut(s)	19, 289
Tru1I	TTAA	1 cut(s)	340
Tru9I	TTAA	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	42, 143
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	272
XapI	RAATTY	1 cut(s)	19
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	1 cut(s)	324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.