Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

23600567 .. 23602345

Gene Structure 1779 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007966

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGATATTCTCAGATTTCGGCCTCTGTGTGTTGGTTATTGCTGTTCTTGATGGTAGAGCGTCTTTTGAAGAGAGTTTTACTGCCAGTGTGGCCGTGCCGACGAGCCAAAGGATTTTTGGAAAGACAAAGGAGGGCGGTGACGGTTGTTGGGTGGAGTGGGATCCTGGTGGAAGGCTGAGAAGTGTGGATCCGATCCTACTCCGACCGGATCATCCGAGCCTGACGCAGGTGTTACTTGTTTGTAGGTTTGCATTTCGTGGAGTTTTCGTTGGTGCAAGTGGCGATCTCCAGCGTCGGCACAGTGGGCGAATTGATGCAAGTGACAGATCATCAAGTGTTGGCGTGGTGGTGAAGTGCGGGTCGAGAGTTTATCAGAGTTTGGGCCTGAAGAGGGGGTCTTCCTTCACTTATAGTGAAGAGAATCATCAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

15.78

Weight (kDa)

7.71

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	220
Acc36I	ACCTGC	1 cut(s)	220
AciI	CCGC	2 cut(s)	138, 360
AclWI	GGATC	6 cut(s)	158, 171, 185, 190, 198, 219
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	1 cut(s)	410
AfiI	CCNNNNNNNGG	2 cut(s)	229, 394
AgsI	TTSAA	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	1 cut(s)	434
AluI	AGCT	1 cut(s)	434
AlwI	GGATC	6 cut(s)	158, 171, 185, 190, 198, 219
AoxI	GGCC	3 cut(s)	22, 93, 385
AspS9I	GGNCC	1 cut(s)	385
AsuHPI	GGTGA	2 cut(s)	152, 364
BamHI	GGATCC	2 cut(s)	163, 190
BbsI	GAAGAC	1 cut(s)	393
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	80
BciT130I	CCWGG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	220
BglI	GCCNNNNNGGC	1 cut(s)	92
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	385
BmiI	GGNNCC	2 cut(s)	165, 192
BmrFI	CCNGG	1 cut(s)	168
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	393
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	275
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 394
Bse1I	ACTGG	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	229, 394
BseMII	CTCAG	2 cut(s)	27, 170
BseNI	ACTGG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	209
BshFI	GGCC	3 cut(s)	24, 95, 387
BsiEI	CGRYCG	1 cut(s)	209
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	229, 394
BsnI	GGCC	3 cut(s)	24, 95, 387
Bsp143I	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
BspACI	CCGC	2 cut(s)	138, 360
BspANI	GGCC	3 cut(s)	24, 95, 387
BspCNI	CTCAG	2 cut(s)	26, 171
BspLI	GGNNCC	2 cut(s)	165, 192
BspMI	ACCTGC	1 cut(s)	220
BspPI	GGATC	6 cut(s)	158, 171, 185, 190, 198, 219
BsrI	ACTGG	1 cut(s)	87
BssMI	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	2 cut(s)	146, 305
Bst6I	CTCTTC	3 cut(s)	66, 386, 414
BstDEI	CTNAG	2 cut(s)	13, 179
BstENI	CCTNNNNNAGG	1 cut(s)	227
BstF5I	GGATG	1 cut(s)	214
BstKTI	GATC	6 cut(s)	166, 193, 198, 214, 289, 332
BstMBI	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
BstMCI	CGRYCG	1 cut(s)	209
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 307
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	2 cut(s)	163, 190
BstYI	RGATCY	2 cut(s)	163, 190
BsuRI	GGCC	3 cut(s)	24, 95, 387
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	2 cut(s)	94, 310
BveI	ACCTGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	385
CseI	GACGC	3 cut(s)	51, 235, 284
CviJI	RGCY	7 cut(s)	24, 95, 108, 178, 222, 387, 434
CviKI_1	RGCY	7 cut(s)	24, 95, 108, 178, 222, 387, 434
DdeI	CTNAG	2 cut(s)	13, 179
DpnI	GATC	6 cut(s)	165, 192, 197, 213, 288, 331
DpnII	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	3 cut(s)	66, 386, 414
EarI	CTCTTC	3 cut(s)	66, 386, 414
Eco57I	CTGAAG	1 cut(s)	410
EcoNI	CCTNNNNNAGG	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	166
FaiI	YATR	1 cut(s)	414
FauI	CCCGC	1 cut(s)	353
FokI	GGATG	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	275
HaeIII	GGCC	3 cut(s)	24, 95, 387
HapII	CCGG	1 cut(s)	209
HgaI	GACGC	3 cut(s)	51, 235, 284
HindIII	AAGCTT	1 cut(s)	432
HinfI	GANTC	1 cut(s)	424
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	2 cut(s)	152, 364
Hpy188I	TCNGA	5 cut(s)	16, 195, 206, 219, 378
Hpy188III	TCNNGA	2 cut(s)	50, 366
Hpy99I	CGWCG	2 cut(s)	106, 300
HpyAV	CCTTC	2 cut(s)	168, 415
HpyCH4III	ACNGT	2 cut(s)	146, 305
HpyCH4V	TGCA	3 cut(s)	254, 278, 320
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 307
HpyF3I	CTNAG	2 cut(s)	13, 179
Kzo9I	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
LpnPI	CCDG	8 cut(s)	100, 153, 180, 215, 222, 236, 305, 401
LweI	GCATC	1 cut(s)	307
MaeIII	GTNAC	3 cut(s)	140, 234, 323
MalI	GATC	6 cut(s)	165, 192, 197, 213, 288, 331
MboI	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
MboII	GAAGA	4 cut(s)	83, 393, 403, 431
MflI	RGATCY	2 cut(s)	163, 190
MluCI	AATT	1 cut(s)	312
MmeI	TCCRAC	1 cut(s)	229
MnlI	CCTC	3 cut(s)	35, 127, 387
MseI	TTAA	1 cut(s)	436
MspI	CCGG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	92, 307
NdeII	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
NlaIV	GGNNCC	2 cut(s)	165, 192
NmuCI	GTSAC	2 cut(s)	140, 323
PaqCI	CACCTGC	1 cut(s)	220
PfeI	GAWTC	1 cut(s)	424
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	2 cut(s)	165, 192
PspPI	GGNCC	1 cut(s)	385
PsuI	RGATCY	2 cut(s)	163, 190
SaqAI	TTAA	1 cut(s)	436
Sau3AI	GATC	6 cut(s)	163, 190, 195, 211, 286, 329
Sau96I	GGNCC	1 cut(s)	385
ScrFI	CCNGG	1 cut(s)	168
SetI	ASST	3 cut(s)	234, 251, 436
SfaNI	GCATC	1 cut(s)	307
Sse9I	AATT	1 cut(s)	312
SsiI	CCGC	2 cut(s)	138, 360
StyD4I	CCNGG	1 cut(s)	166
TaaI	ACNGT	2 cut(s)	146, 305
TaqI	TCGA	1 cut(s)	365
TasI	AATT	1 cut(s)	312
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TscAI	CASTG	2 cut(s)	94, 310
TseFI	GTSAC	2 cut(s)	140, 323
Tsp45I	GTSAC	2 cut(s)	140, 323
TspRI	CASTG	2 cut(s)	94, 310
XagI	CCTNNNNNAGG	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.