Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Reverse (-)

22045226 .. 22045663

Gene Structure 438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG137500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGATACTTCTAGGCTTCGGCCTCTGTGTGTTGGCTCTTGCTGTTTTCGATGGTAGAGTGTTGCTTGAGGAGAGTTTTGGCGTTGGTGTGGTCATGCCGGCGAGCCAAAGGAATTTTGGATTGACAAAGGAAGGCAGCGGTGGTTGTCGGAAGGAGTGGGATCTGGGTAGTGGGTTGAATATGTTCCCTCTATCTCACGGTGGTCTTAGCCAGTCATACCATTCTGGAGCTAACGCTGCGATGAGTGGGCTATGGTCTGGTGTAGGTGACCTTGTTTGGGTAGTCGGCGATCTTCGAGATCTGCGTGGTGAGGTAGATGACGGCCCTTTGATTGGAGGCATGGCGGAGACGGATACCGGGTGTGTCGTCGGCGGTAAGGTCAATTGTCCAGATGCTTTGGGTATGGGGCGAAGACCTAGTGGGTTCTGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

145

Amino Acids

15.05

Weight (kDa)

4.72

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	141, 347, 375
AclWI	GGATC	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	115
AfiI	CCNNNNNNNGG	2 cut(s)	280, 335
AgsI	TTSAA	1 cut(s)	181
AluBI	AGCT	1 cut(s)	233
AluI	AGCT	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	171
AoxI	GGCC	2 cut(s)	22, 325
ApeKI	GCWGC	2 cut(s)	138, 239
ApoI	RAATTY	1 cut(s)	115
Asp700I	GAANNNNTTC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	326
AsuC2I	CCSGG	1 cut(s)	361
AsuHPI	GGTGA	2 cut(s)	281, 323
BbsI	GAAGAC	1 cut(s)	421
BbvI	GCAGC	2 cut(s)	150, 226
BccI	CCATC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	340
BciVI	GTATCC	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	361
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	2 cut(s)	14, 420
BfuI	GTATCC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	2 cut(s)	139, 240
BlsI	GCNGC	2 cut(s)	140, 241
Bme1390I	CCNGG	1 cut(s)	361
BmgT120I	GGNCC	1 cut(s)	326
BmrFI	CCNGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	385
BpiI	GAAGAC	1 cut(s)	421
BpmI	CTGGAG	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	89
BpuMI	CCSGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 335
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	214
BseLI	CCNNNNNNNGG	2 cut(s)	280, 335
BseNI	ACTGG	1 cut(s)	214
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	150, 226
BshFI	GGCC	2 cut(s)	24, 327
BsiSI	CCGG	2 cut(s)	101, 360
BslI	CCNNNNNNNGG	2 cut(s)	280, 335
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsnI	GGCC	2 cut(s)	24, 327
Bsp143I	GATC	3 cut(s)	163, 292, 301
BspACI	CCGC	3 cut(s)	141, 347, 375
BspANI	GGCC	2 cut(s)	24, 327
BspPI	GGATC	1 cut(s)	171
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	100
BssMI	GATC	3 cut(s)	163, 292, 301
Bst4CI	ACNGT	1 cut(s)	203
BstC8I	GCNNGC	2 cut(s)	102, 106
BstDEI	CTNAG	1 cut(s)	209
BstEII	GGTNACC	1 cut(s)	269
BstKTI	GATC	3 cut(s)	166, 295, 304
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	3 cut(s)	163, 292, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstPI	GGTNACC	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	359
BstV1I	GCAGC	2 cut(s)	150, 226
BstV2I	GAAGAC	1 cut(s)	421
BstX2I	RGATCY	2 cut(s)	163, 301
BstYI	RGATCY	2 cut(s)	163, 301
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	2 cut(s)	24, 327
BtgZI	GCGATG	1 cut(s)	257
Cac8I	GCNNGC	2 cut(s)	102, 106
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	326
CviAII	CATG	2 cut(s)	97, 343
CviJI	RGCY	9 cut(s)	18, 24, 38, 108, 213, 233, 253, 327, 434
CviKI_1	RGCY	9 cut(s)	18, 24, 38, 108, 213, 233, 253, 327, 434
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	3 cut(s)	165, 294, 303
DpnII	GATC	3 cut(s)	163, 292, 301
EciI	GGCGGA	1 cut(s)	362
Eco91I	GGTNACC	1 cut(s)	269
EcoO65I	GGTNACC	1 cut(s)	269
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	2 cut(s)	100, 346
FaiI	YATR	6 cut(s)	98, 185, 220, 256, 344, 407
FatI	CATG	2 cut(s)	96, 342
Fnu4HI	GCNGC	2 cut(s)	139, 240
Fsp4HI	GCNGC	2 cut(s)	139, 240
FspBI	CTAG	2 cut(s)	14, 420
GluI	GCNGC	2 cut(s)	139, 240
GsuI	CTGGAG	1 cut(s)	249
HaeIII	GGCC	2 cut(s)	24, 327
HapII	CCGG	2 cut(s)	101, 360
Hin1II	CATG	2 cut(s)	100, 346
HpaII	CCGG	2 cut(s)	101, 360
HphI	GGTGA	2 cut(s)	281, 323
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	228, 299, 392
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	2 cut(s)	128, 148
HpyCH4III	ACNGT	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	1 cut(s)	209
Hsp92II	CATG	2 cut(s)	100, 346
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Kzo9I	GATC	3 cut(s)	163, 292, 301
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	8 cut(s)	114, 152, 213, 227, 246, 373, 405, 415
Lsp1109I	GCAGC	2 cut(s)	150, 226
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	2 cut(s)	14, 420
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	3 cut(s)	165, 294, 303
MboI	GATC	3 cut(s)	163, 292, 301
MboII	GAAGA	2 cut(s)	287, 426
MfeI	CAATTG	1 cut(s)	385
MflI	RGATCY	2 cut(s)	163, 301
MluCI	AATT	2 cut(s)	115, 385
MmeI	TCCRAC	1 cut(s)	131
MnlI	CCTC	5 cut(s)	35, 64, 201, 307, 332
MroNI	GCCGGC	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	185
MseI	TTAA	1 cut(s)	436
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	2 cut(s)	101, 360
MspR9I	CCNGG	1 cut(s)	361
MunI	CAATTG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	361
NdeII	GATC	3 cut(s)	163, 292, 301
NgoMIV	GCCGGC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	100, 346
NmuCI	GTSAC	1 cut(s)	269
PcsI	WCGNNNNNNNCGW	1 cut(s)	304
PdiI	GCCGGC	1 cut(s)	102
PdmI	GAANNNNTTC	1 cut(s)	185
PkrI	GCNGC	2 cut(s)	140, 241
PspEI	GGTNACC	1 cut(s)	269
PspPI	GGNCC	1 cut(s)	326
PsuI	RGATCY	2 cut(s)	163, 301
SaqAI	TTAA	1 cut(s)	436
SatI	GCNGC	2 cut(s)	139, 240
Sau3AI	GATC	3 cut(s)	163, 292, 301
Sau96I	GGNCC	1 cut(s)	326
ScrFI	CCNGG	1 cut(s)	361
SetI	ASST	6 cut(s)	235, 271, 276, 318, 384, 421
SfaNI	GCATC	1 cut(s)	385
SmlI	CTYRAG	1 cut(s)	68
SmoI	CTYRAG	1 cut(s)	68
Sse9I	AATT	2 cut(s)	115, 385
SsiI	CCGC	3 cut(s)	141, 347, 375
SspMI	CTAG	2 cut(s)	14, 420
StyD4I	CCNGG	1 cut(s)	359
TaaI	ACNGT	1 cut(s)	203
TaqI	TCGA	2 cut(s)	51, 298
TasI	AATT	2 cut(s)	115, 385
Tru1I	TTAA	1 cut(s)	436
Tru9I	TTAA	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	269
TseI	GCWGC	2 cut(s)	138, 239
Tsp45I	GTSAC	1 cut(s)	269
TspGWI	ACGGA	1 cut(s)	368
XapI	RAATTY	1 cut(s)	115
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	185
XspI	CTAG	2 cut(s)	14, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.