FvH4_2g00620

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
665140 .. 667996
2857 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g00620.t1

Sequence Viewer

Length: 1587 bp
ATGGCTTCGGTCTTGCCTCCTTATCCGTCACGACAAGCACGCTTCTCGGCGACAAAAACATGTTGTCCTCCTCTCGTTCATGGTGGTTGGGGTGGAAAAGAGTTTGTGTTGAGTGGTGGGTTCGGATCGGTTTCAAGTGTTGATCGTTTTGGGCCGAGTCGAGCACGCCTCAAAGCAAATTTGTGGGAGAGATCTGCACCGGCGACGAGAGGGTGTTTATTGGAGTGGTGGTCGATTGATGTGAAGGCGGTTGGGAGATGGTTTTTTCGGCGACCGGTTTCGATGATGGGTTTTTGTGGGAATCGGGACTGGCTCTCGTCGTTTCTTTTCAACAATCCTCTCTACTTTGATGGGATATGCGGCAGCGTATTGGCATGTGCAGATCGGCTGGAACCTAGGTCGGGGTTGAAGGAGGGAAGCCGGGCTTGTGCCGTGGTTGTCCGTCTTATTCAGGTGGCGGTGATTCGGCTGGATCCTAGGTCGGGGCGGATCCAGGCTCAGCTGTGTGTGCTGGGTCGGATCTGGATCCGGGCCTGGGGCAAGGTTTGGGTCTGGGATCCGAGAGGTTTCTATGGGCCTTGGGCTTGGAATCCAATCTCTTTGTGCTCTTGGAAATACTGCCAGTGTCTTTGGTTTTGGCCTCTACATTGGTTTTGCTATTGGTTGACGGACCCACAATTATGGTATTTGTTCGTTAAGGATCGTTTGCCATCACGGCCATGTCTGGATTCTCCCTTGGCCGGCTTCAATTCTTTAGGTGGAAGATTACCGTTAGTCCGATGCCGCAATGATTTTTATCATTTTGTGCATTGGATTTATATGGGTAGTCAAATCACCGACTACTCACTTCGTTCAACGGCTGCAATCCGTAAGCGTAAACCCGAGTCCATGTGCTATTGTTTTAGCGTTGATGCTCATATTGCATTTTTATTTTCATTATATCTGAAGCTCATTAGATATAAAGGGCGATCAATTGATCTTGGGATTGAGAGAGTGAAGCCGGCCCTTGGTCGAAGTTTCCTCTTCGAATCGGGGATTTGCGGTGGTGAGGCAAGGATTGAGATCCACATGATGACGATTGGGTTTTGGCTCCTTCCTCTCTGGTCTAAGCAGCGGGGTGTGTTGGCGGAGCTTCTGCGAAGGTGGTTGGGCGTGGTGGCATGGCTGGATCCGCCTCTAAGGTCTTGTTGTTCTGCAAGGTCGCTACGATGGGATTGTGATGATGCGATCTGGATGGGATCTTTTAGATCTGATTTGGGTACAAACCCGACCAGGGGAAGGACTTGGTGCAACTCCAGCGTGAGGATGACGACTATACGAGTAGGAGGGTGGTCCGACGCATCTGGCGAGACGGGGAGGGCAAGGCTTGGTCGGCGGCTATGGTTGGCTCAATTCCTTGGTTTAGGGTTTGGGCTTGGGCCTGGGCTCAATGGTACTTGGATTCGGGTAGCTGGTTCGTTGTTACAAGAACCCAGATTTCAGCCGGTATTTGGCCGCGCATATTATCAGCCTGTGTTGAACATGCCGGGAGATCCTAGGATGGCCCACCCAATGGTATTCTGTTGTGGTCAGATCCTGTCCCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

529

Amino Acids

60.12

Weight (kDa)

9.84

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1552
AccII CGCG 1 cut(s) 1497
AcoI YGGCCR 3 cut(s) 716, 738, 1492
AcsI RAATTY 1 cut(s) 178
AcuI CTGAAG 1 cut(s) 965
AfaI GTAC 2 cut(s) 1261, 1435
AflIII ACRYGT 1 cut(s) 59
AgeI ACCGGT 1 cut(s) 274
AgsI TTSAA 6 cut(s) 135, 331, 409, 748, 855, 1519
AjnI CCWGG 4 cut(s) 492, 533, 1271, 1420
AluBI AGCT 4 cut(s) 502, 949, 1132, 1451
AluI AGCT 4 cut(s) 502, 949, 1132, 1451
Alw21I GWGCWC 2 cut(s) 166, 608
Alw26I GTCTC 1 cut(s) 1343
AlwNI CAGNNNCTG 1 cut(s) 1576
Ama87I CYCGRG 1 cut(s) 881
ApeKI GCWGC 3 cut(s) 363, 860, 1111
ApoI RAATTY 1 cut(s) 178
AsiGI ACCGGT 1 cut(s) 274
AspA2I CCTAGG 3 cut(s) 395, 476, 1535
AspLEI GCGC 1 cut(s) 1499
AspS9I GGNCC 8 cut(s) 152, 531, 575, 670, 1003, 1332, 1418, 1543
AsuC2I CCSGG 3 cut(s) 422, 530, 1527
AsuHPI GGTGA 3 cut(s) 472, 826, 1058
AsuII TTCGAA 1 cut(s) 1026
AvaI CYCGRG 1 cut(s) 881
AvaII GGWCC 2 cut(s) 670, 1332
AvrII CCTAGG 3 cut(s) 395, 476, 1535
BamHI GGATCC 5 cut(s) 472, 489, 525, 556, 1168
BanII GRGCYC 1 cut(s) 1428
Bbv12I GWGCWC 2 cut(s) 166, 608
BbvI GCAGC 3 cut(s) 375, 847, 1123
BccI CCATC 7 cut(s) 252, 280, 344, 718, 1203, 1228, 1534
BceAI ACGGC 3 cut(s) 416, 731, 873
BcgI CGANNNNNNTGC 2 cut(s) 27, 61
BciT130I CCWGG 4 cut(s) 494, 535, 1273, 1422
BcnI CCSGG 3 cut(s) 422, 530, 1527
BcoDI GTCTC 1 cut(s) 1343
BfaI CTAG 3 cut(s) 396, 477, 1536
BglI GCCNNNNNGGC 1 cut(s) 715
BglII AGATCT 2 cut(s) 191, 1247
BisI GCNGC 7 cut(s) 361, 364, 784, 861, 1112, 1376, 1495
BlnI CCTAGG 3 cut(s) 395, 476, 1535
BlpI GCTNAGC 1 cut(s) 498
BlsI GCNGC 7 cut(s) 362, 365, 785, 862, 1113, 1377, 1496
Bme1390I CCNGG 7 cut(s) 422, 494, 530, 535, 1273, 1422, 1527
Bme18I GGWCC 2 cut(s) 670, 1332
BmeT110I CYCGRG 1 cut(s) 881
BmgT120I GGNCC 8 cut(s) 152, 531, 575, 670, 1003, 1332, 1418, 1543
BmiI GGNNCC 8 cut(s) 393, 474, 491, 527, 558, 672, 1091, 1170
BmrFI CCNGG 7 cut(s) 422, 494, 530, 535, 1273, 1422, 1527
BmrI ACTGGG 1 cut(s) 1576
BmsI GCATC 4 cut(s) 770, 901, 1213, 1349
BmuI ACTGGG 1 cut(s) 1576
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpmI CTGGAG 1 cut(s) 1279
Bpu1102I GCTNAGC 1 cut(s) 498
Bpu14I TTCGAA 1 cut(s) 1026
BpuMI CCSGG 3 cut(s) 422, 530, 1527
BsaBI GATNNNNATC 3 cut(s) 524, 795, 1061
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bse118I RCCGGY 5 cut(s) 199, 274, 740, 1000, 1483
Bse1I ACTGG 3 cut(s) 314, 622, 1582
Bse3DI GCAATG 1 cut(s) 793
Bse8I GATNNNNATC 3 cut(s) 524, 795, 1061
BseBI CCWGG 4 cut(s) 494, 535, 1273, 1422
BseGI GGATG 3 cut(s) 1239, 1311, 1545
BseJI GATNNNNATC 3 cut(s) 524, 795, 1061
BseMI GCAATG 1 cut(s) 793
BseMII CTCAG 1 cut(s) 512
BseNI ACTGG 3 cut(s) 314, 622, 1582
BseRI GAGGAG 1 cut(s) 60
BseXI GCAGC 3 cut(s) 375, 847, 1123
BseYI CCCAGC 1 cut(s) 511
BsgI GTGCAG 2 cut(s) 180, 399
Bsh1236I CGCG 1 cut(s) 1497
Bsh1285I CGRYCG 1 cut(s) 275
BshTI ACCGGT 1 cut(s) 274
BsiEI CGRYCG 1 cut(s) 275
BsiHKAI GWGCWC 2 cut(s) 166, 608
BsiHKCI CYCGRG 1 cut(s) 881
BsiSI CCGG 8 cut(s) 200, 275, 421, 529, 741, 1001, 1484, 1526
BslFI GGGAC 2 cut(s) 320, 1564
BsmAI GTCTC 1 cut(s) 1343
BsmBI CGTCTC 1 cut(s) 1343
BsmFI GGGAC 2 cut(s) 320, 1564
BsoBI CYCGRG 1 cut(s) 881
Bsp119I TTCGAA 1 cut(s) 1026
Bsp1286I GDGCHC 3 cut(s) 166, 608, 1428
Bsp1720I GCTNAGC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 511
BspFNI CGCG 1 cut(s) 1497
BspLI GGNNCC 8 cut(s) 393, 474, 491, 527, 558, 672, 1091, 1170
BspT104I TTCGAA 1 cut(s) 1026
BsrDI GCAATG 1 cut(s) 793
BsrFI RCCGGY 5 cut(s) 199, 274, 740, 1000, 1483
BsrI ACTGG 3 cut(s) 314, 622, 1582
BssAI RCCGGY 5 cut(s) 199, 274, 740, 1000, 1483
BssT1I CCWWGG 7 cut(s) 395, 476, 578, 735, 1006, 1396, 1535
Bst2UI CCWGG 4 cut(s) 494, 535, 1273, 1422
Bst4CI ACNGT 1 cut(s) 771
Bst6I CTCTTC 1 cut(s) 1028
BstBI TTCGAA 1 cut(s) 1026
BstC8I GCNNGC 4 cut(s) 40, 166, 742, 1002
BstDEI CTNAG 3 cut(s) 498, 1107, 1178
BstDSI CCRYGG 1 cut(s) 432
BstF5I GGATG 3 cut(s) 1239, 1311, 1545
BstFNI CGCG 1 cut(s) 1497
BstHHI GCGC 1 cut(s) 1499
BstMAI GTCTC 1 cut(s) 1343
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 6 cut(s) 508, 715, 920, 1171, 1296, 1372
BstNI CCWGG 4 cut(s) 494, 535, 1273, 1422
BstNSI RCATGY 3 cut(s) 63, 378, 1525
BstSCI CCNGG 7 cut(s) 420, 492, 528, 533, 1271, 1420, 1525
BstUI CGCG 1 cut(s) 1497
BstV1I GCAGC 3 cut(s) 375, 847, 1123
BstXI CCANNNNNNTGG 1 cut(s) 681
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 3 cut(s) 1239, 1311, 1545
BtsIMutI CAGTG 1 cut(s) 629
Cac8I GCNNGC 4 cut(s) 40, 166, 742, 1002
CaiI CAGNNNCTG 1 cut(s) 1576
CfoI GCGC 1 cut(s) 1499
Cfr10I RCCGGY 5 cut(s) 199, 274, 740, 1000, 1483
Cfr13I GGNCC 8 cut(s) 152, 531, 575, 670, 1003, 1332, 1418, 1543
CseI GACGC 1 cut(s) 1346
Csp6I GTAC 2 cut(s) 1260, 1434
CspAI ACCGGT 1 cut(s) 274
CviAII CATG 8 cut(s) 60, 80, 375, 720, 889, 1069, 1161, 1522
CviQI GTAC 2 cut(s) 1260, 1434
DdeI CTNAG 3 cut(s) 498, 1107, 1178
EaeI YGGCCR 3 cut(s) 716, 738, 1492
Eam1104I CTCTTC 1 cut(s) 1028
EarI CTCTTC 1 cut(s) 1028
EciI GGCGGA 3 cut(s) 502, 1142, 1161
Eco130I CCWWGG 7 cut(s) 395, 476, 578, 735, 1006, 1396, 1535
Eco24I GRGCYC 1 cut(s) 1428
Eco47I GGWCC 2 cut(s) 670, 1332
Eco57I CTGAAG 1 cut(s) 965
Eco88I CYCGRG 1 cut(s) 881
EcoRII CCWGG 4 cut(s) 492, 533, 1271, 1420
EcoT14I CCWWGG 7 cut(s) 395, 476, 578, 735, 1006, 1396, 1535
EcoT38I GRGCYC 1 cut(s) 1428
ErhI CCWWGG 7 cut(s) 395, 476, 578, 735, 1006, 1396, 1535
Esp3I CGTCTC 1 cut(s) 1343
FaeI CATG 8 cut(s) 63, 83, 378, 723, 892, 1072, 1164, 1525
FalI AAGNNNNNCTT 2 cut(s) 409, 441
FaqI GGGAC 2 cut(s) 320, 1564
FatI CATG 8 cut(s) 59, 79, 374, 719, 888, 1068, 1160, 1521
FauI CCCGC 1 cut(s) 1107
Fnu4HI GCNGC 7 cut(s) 361, 364, 784, 861, 1112, 1376, 1495
FokI GGATG 3 cut(s) 1246, 1318, 1552
FriOI GRGCYC 1 cut(s) 1428
Fsp4HI GCNGC 7 cut(s) 361, 364, 784, 861, 1112, 1376, 1495
FspBI CTAG 3 cut(s) 396, 477, 1536
GlaI GCGC 1 cut(s) 1498
GluI GCNGC 7 cut(s) 361, 364, 784, 861, 1112, 1376, 1495
GsaI CCCAGC 1 cut(s) 515
GsuI CTGGAG 1 cut(s) 1279
HapII CCGG 8 cut(s) 200, 275, 421, 529, 741, 1001, 1484, 1526
HgaI GACGC 1 cut(s) 1346
HhaI GCGC 1 cut(s) 1499
Hin1II CATG 8 cut(s) 63, 83, 378, 723, 892, 1072, 1164, 1525
Hin6I GCGC 1 cut(s) 1497
HinP1I GCGC 1 cut(s) 1497
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HinfI GANTC 8 cut(s) 157, 301, 463, 589, 728, 884, 1028, 1441
HpaII CCGG 8 cut(s) 200, 275, 421, 529, 741, 1001, 1484, 1526
HphI GGTGA 3 cut(s) 472, 826, 1058
Hpy166II GTNNAC 2 cut(s) 666, 878
Hpy188I TCNGA 8 cut(s) 125, 519, 561, 779, 945, 1252, 1336, 1572
Hpy188III TCNNGA 5 cut(s) 30, 305, 523, 725, 1231
Hpy8I GTNNAC 2 cut(s) 666, 878
Hpy99I CGWCG 3 cut(s) 208, 322, 1340
HpyAV CCTTC 5 cut(s) 238, 403, 1103, 1134, 1272
HpyCH4III ACNGT 1 cut(s) 771
HpyCH4V TGCA 7 cut(s) 197, 380, 808, 863, 923, 1196, 1290
HpyF10VI GCNNNNNNNGC 6 cut(s) 508, 715, 920, 1171, 1296, 1372
HpyF3I CTNAG 3 cut(s) 498, 1107, 1178
Hsp92II CATG 8 cut(s) 63, 83, 378, 723, 892, 1072, 1164, 1525
HspAI GCGC 1 cut(s) 1497
KroI GCCGGC 2 cut(s) 740, 1000
KroNI GCCGGC 2 cut(s) 742, 1002
LmnI GCTCC 2 cut(s) 1095, 1129
Lsp1109I GCAGC 3 cut(s) 375, 847, 1123
LweI GCATC 4 cut(s) 770, 901, 1213, 1349
MaeI CTAG 3 cut(s) 396, 477, 1536
MaeIII GTNAC 2 cut(s) 27, 1461
MboII GAAGA 2 cut(s) 774, 1015
MfeI CAATTG 1 cut(s) 972
MhlI GDGCHC 3 cut(s) 166, 608, 1428
MluCI AATT 5 cut(s) 178, 677, 748, 972, 1391
MlyI GAGTC 2 cut(s) 166, 893
MmeI TCCRAC 2 cut(s) 497, 1359
MroNI GCCGGC 2 cut(s) 740, 1000
MseI TTAA 1 cut(s) 696
MslI CAYNNNNRTG 2 cut(s) 679, 718
MspA1I CMGCKG 2 cut(s) 502, 1114
MspI CCGG 8 cut(s) 200, 275, 421, 529, 741, 1001, 1484, 1526
MspR9I CCNGG 7 cut(s) 422, 494, 530, 535, 1273, 1422, 1527
MunI CAATTG 1 cut(s) 972
MvaI CCWGG 4 cut(s) 494, 535, 1273, 1422
MvnI CGCG 1 cut(s) 1497
MwoI GCNNNNNNNGC 6 cut(s) 508, 715, 920, 1171, 1296, 1372
NaeI GCCGGC 2 cut(s) 742, 1002
NciI CCSGG 3 cut(s) 422, 530, 1527
NgoMIV GCCGGC 2 cut(s) 740, 1000
NlaIII CATG 8 cut(s) 63, 83, 378, 723, 892, 1072, 1164, 1525
NlaIV GGNNCC 8 cut(s) 393, 474, 491, 527, 558, 672, 1091, 1170
NmeAIII GCCGAG 2 cut(s) 26, 180
NmuCI GTSAC 1 cut(s) 27
NspI RCATGY 3 cut(s) 63, 378, 1525
NspV TTCGAA 1 cut(s) 1026
PciI ACATGT 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 1344
PdiI GCCGGC 2 cut(s) 742, 1002
PfeI GAWTC 6 cut(s) 301, 463, 589, 728, 1028, 1441
PflMI CCANNNNNTGG 1 cut(s) 1552
PinAI ACCGGT 1 cut(s) 274
PkrI GCNGC 7 cut(s) 362, 365, 785, 862, 1113, 1377, 1496
PleI GAGTC 2 cut(s) 165, 892
PpsI GAGTC 2 cut(s) 165, 892
PscI ACATGT 1 cut(s) 59
Psp6I CCWGG 4 cut(s) 492, 533, 1271, 1420
PspFI CCCAGC 1 cut(s) 511
PspGI CCWGG 4 cut(s) 492, 533, 1271, 1420
PspN4I GGNNCC 8 cut(s) 393, 474, 491, 527, 558, 672, 1091, 1170
PspPI GGNCC 8 cut(s) 152, 531, 575, 670, 1003, 1332, 1418, 1543
PstNI CAGNNNCTG 1 cut(s) 1576
PvuII CAGCTG 1 cut(s) 502
RsaI GTAC 2 cut(s) 1261, 1435
RsaNI GTAC 2 cut(s) 1260, 1434
RseI CAYNNNNRTG 2 cut(s) 679, 718
SaqAI TTAA 1 cut(s) 696
SatI GCNGC 7 cut(s) 361, 364, 784, 861, 1112, 1376, 1495
Sau96I GGNCC 8 cut(s) 152, 531, 575, 670, 1003, 1332, 1418, 1543
SchI GAGTC 2 cut(s) 166, 893
ScrFI CCNGG 7 cut(s) 422, 494, 530, 535, 1273, 1422, 1527
SduI GDGCHC 3 cut(s) 166, 608, 1428
SfaNI GCATC 4 cut(s) 770, 901, 1213, 1349
SfuI TTCGAA 1 cut(s) 1026
SgrAI CRCCGGYG 1 cut(s) 199
SinI GGWCC 2 cut(s) 670, 1332
SmiMI CAYNNNNRTG 2 cut(s) 679, 718
Sse9I AATT 5 cut(s) 178, 677, 748, 972, 1391
SspMI CTAG 3 cut(s) 396, 477, 1536
StyD4I CCNGG 7 cut(s) 420, 492, 528, 533, 1271, 1420, 1525
StyI CCWWGG 7 cut(s) 395, 476, 578, 735, 1006, 1396, 1535
TaaI ACNGT 1 cut(s) 771
TaqI TCGA 5 cut(s) 160, 233, 281, 1012, 1026
TasI AATT 5 cut(s) 178, 677, 748, 972, 1391
TauI GCSGC 4 cut(s) 363, 786, 1378, 1497
TfiI GAWTC 6 cut(s) 301, 463, 589, 728, 1028, 1441
Tru1I TTAA 1 cut(s) 696
Tru9I TTAA 1 cut(s) 696
TscAI CASTG 1 cut(s) 629
TseFI GTSAC 1 cut(s) 27
TseI GCWGC 3 cut(s) 363, 860, 1111
Tsp45I GTSAC 1 cut(s) 27
TspDTI ATGAA 2 cut(s) 68, 924
TspGWI ACGGA 4 cut(s) 15, 431, 683, 857
TspRI CASTG 1 cut(s) 629
Van91I CCANNNNNTGG 1 cut(s) 1552
VpaK11BI GGWCC 2 cut(s) 670, 1332
XapI RAATTY 1 cut(s) 178
XceI RCATGY 3 cut(s) 63, 378, 1525
XmaJI CCTAGG 3 cut(s) 395, 476, 1535
XspI CTAG 3 cut(s) 396, 477, 1536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.