Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

48896575 .. 48897120

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGAAAATTTCAGGCTTCCGCCTCTTCGTCGTCATCTTCATTGTCTTCGGTGGTAGTGGCTCTCCTGTGGGGAGTTTGGGCGCTGCTGGGGAGGGGTCGATAGAACAACATTCTGTTGAGATGGCATTGCAGGGTGGCGGTGATTACTGGGAGGAGTGGGGTTCGGATAGAAGTCAAGTGCATGGTGGTGTAAGAGGCCATGATTGGGCAGTCGGCGATCTTCGAGATCTGCATGGTAAGGCAAACGACGACCCTTTGATTGGCGGCATGCCAAATACTTGGTGTGTCGCCAGCGGTAAGGTGGATTTCCCAGAGGTGGTGGGTACTGGGAGACGACCTAGTGGGTTCTGGGCTCAAGTGGTTTTGGACATGGGCCGGAGCAGCCATGGGTGGACAAGAGGCTTTGGGCCTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

139

Amino Acids

14.64

Weight (kDa)

5.64

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	19, 138, 264, 294
AcsI	RAATTY	1 cut(s)	6
AfaI	GTAC	1 cut(s)	325
AfiI	CCNNNNNNNGG	3 cut(s)	205, 260, 316
Alw26I	GTCTC	1 cut(s)	325
AoxI	GGCC	3 cut(s)	196, 373, 407
ApeKI	GCWGC	2 cut(s)	83, 381
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	2 cut(s)	373, 407
AsuHPI	GGTGA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	70, 393
BccI	CCATC	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	325
BfaI	CTAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	84
BglII	AGATCT	1 cut(s)	226
BisI	GCNGC	3 cut(s)	84, 265, 382
BlsI	GCNGC	3 cut(s)	85, 266, 383
BmgT120I	GGNCC	2 cut(s)	373, 407
BmrI	ACTGGG	2 cut(s)	157, 336
BmuI	ACTGGG	2 cut(s)	157, 336
BpiI	GAAGAC	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	339
BsaJI	CCNNGG	1 cut(s)	385
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 260, 316
Bse1I	ACTGG	2 cut(s)	152, 331
Bse3DI	GCAATG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	385
BseLI	CCNNNNNNNGG	3 cut(s)	205, 260, 316
BseMI	GCAATG	1 cut(s)	125
BseNI	ACTGG	2 cut(s)	152, 331
BseRI	GAGGAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	70, 393
BseYI	CCCAGC	1 cut(s)	86
BshFI	GGCC	3 cut(s)	198, 375, 409
BsiSI	CCGG	1 cut(s)	376
BslI	CCNNNNNNNGG	3 cut(s)	205, 260, 316
BsmAI	GTCTC	1 cut(s)	325
BsmBI	CGTCTC	1 cut(s)	325
BsnI	GGCC	3 cut(s)	198, 375, 409
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	217, 226
Bsp19I	CCATGG	1 cut(s)	385
BspACI	CCGC	4 cut(s)	19, 138, 264, 294
BspANI	GGCC	3 cut(s)	198, 375, 409
BsrDI	GCAATG	1 cut(s)	125
BsrI	ACTGG	2 cut(s)	152, 331
BssECI	CCNNGG	1 cut(s)	385
BssMI	GATC	2 cut(s)	217, 226
BssT1I	CCWWGG	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	269, 292
BstDSI	CCRYGG	1 cut(s)	385
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	2 cut(s)	220, 229
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	2 cut(s)	217, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	381
BstNSI	RCATGY	1 cut(s)	271
BstV1I	GCAGC	2 cut(s)	70, 393
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	1 cut(s)	226
BstXI	CCANNNNNNTGG	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	3 cut(s)	198, 375, 409
BtgI	CCRYGG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	269, 292
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	2 cut(s)	373, 407
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	6 cut(s)	182, 200, 233, 268, 370, 386
CviJI	RGCY	8 cut(s)	15, 60, 198, 353, 375, 384, 402, 409
CviKI_1	RGCY	8 cut(s)	15, 60, 198, 353, 375, 384, 402, 409
CviQI	GTAC	1 cut(s)	324
DpnI	GATC	2 cut(s)	219, 228
DpnII	GATC	2 cut(s)	217, 226
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
EciI	GGCGGA	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	385
Eco24I	GRGCYC	1 cut(s)	355
EcoT14I	CCWWGG	1 cut(s)	385
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	385
Esp3I	CGTCTC	1 cut(s)	325
FaeI	CATG	6 cut(s)	185, 203, 236, 271, 373, 389
FaiI	YATR	7 cut(s)	183, 201, 234, 269, 371, 387, 415
FatI	CATG	6 cut(s)	181, 199, 232, 267, 369, 385
Fnu4HI	GCNGC	3 cut(s)	84, 265, 382
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	3 cut(s)	84, 265, 382
FspBI	CTAG	1 cut(s)	339
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	3 cut(s)	84, 265, 382
GsaI	CCCAGC	1 cut(s)	90
HaeII	RGCGCY	1 cut(s)	84
HaeIII	GGCC	3 cut(s)	198, 375, 409
HapII	CCGG	1 cut(s)	376
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	6 cut(s)	185, 203, 236, 271, 373, 389
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	1 cut(s)	166
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	2 cut(s)	32, 251
HpyCH4V	TGCA	3 cut(s)	130, 181, 232
HpyF10VI	GCNNNNNNNGC	1 cut(s)	381
Hsp92II	CATG	6 cut(s)	185, 203, 236, 271, 373, 389
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	2 cut(s)	217, 226
LmnI	GCTCC	1 cut(s)	378
LpnPI	CCDG	9 cut(s)	72, 78, 116, 133, 304, 312, 324, 334, 389
Lsp1109I	GCAGC	2 cut(s)	70, 393
MaeI	CTAG	1 cut(s)	339
MalI	GATC	2 cut(s)	219, 228
MboI	GATC	2 cut(s)	217, 226
MboII	GAAGA	4 cut(s)	16, 28, 37, 212
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	1 cut(s)	6
MnlI	CCTC	6 cut(s)	32, 85, 145, 188, 307, 392
MslI	CAYNNNNRTG	1 cut(s)	186
MspA1I	CMGCKG	1 cut(s)	294
MspI	CCGG	1 cut(s)	376
MwoI	GCNNNNNNNGC	1 cut(s)	381
NcoI	CCATGG	1 cut(s)	385
NdeII	GATC	2 cut(s)	217, 226
NlaIII	CATG	6 cut(s)	185, 203, 236, 271, 373, 389
NspI	RCATGY	1 cut(s)	271
PaeI	GCATGC	1 cut(s)	271
PkrI	GCNGC	3 cut(s)	85, 266, 383
PspFI	CCCAGC	1 cut(s)	86
PspPI	GGNCC	2 cut(s)	373, 407
PsuI	RGATCY	1 cut(s)	226
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	186
SatI	GCNGC	3 cut(s)	84, 265, 382
Sau3AI	GATC	2 cut(s)	217, 226
Sau96I	GGNCC	2 cut(s)	373, 407
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	3 cut(s)	303, 318, 340
SmiMI	CAYNNNNRTG	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	354
SmoI	CTYRAG	1 cut(s)	354
SphI	GCATGC	1 cut(s)	271
Sse9I	AATT	1 cut(s)	6
SsiI	CCGC	4 cut(s)	19, 138, 264, 294
SspMI	CTAG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	385
TaqI	TCGA	2 cut(s)	98, 223
TasI	AATT	1 cut(s)	6
TauI	GCSGC	1 cut(s)	267
TseI	GCWGC	2 cut(s)	83, 381
TspDTI	ATGAA	2 cut(s)	17, 28
XapI	RAATTY	1 cut(s)	6
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	298
XspI	CTAG	1 cut(s)	339

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.