Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002356.1

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

42446 .. 45390

Gene Structure 2945 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002356.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

atgaaaatacctagcgctctgctagggttgggagagcgcccttcttggcctctctgtaccttactccatcatcgatggagtacccttccggcactgtgtttggcctcgagacctttacgcacggcttctaccatgcttctttatcaatcgcagcaaccctgcttcctggcgacgactctttgcccccagtctcactctgatcatggttggtggggagaagagagggctgcgctgccacgtgggagtgaaacggtgcaggttggtcaccgactccgaccgagctgggcacttctgaaatgggatctggtggttagatttggcctgctggtggggttgatgggttgttgcttgaccatgttctcatgtgaagggacgaggccaaattggcggccggcgaggattgactttggcgttcgagtccccgcgagacgacaccttgattcaataggacatgtccaagatgggttttctccggcgaggattggcagagcaatggctagggttgacggccaagcaggattgggtgcccagagtgtttttgggtgtccaatgggcctgggcttgtttgggttactcaagaagggcctttgcttgggccttgcccagagctatagaacgcaccatcacaacgcaaagagagaaatccaagatctgaagcagaatcgcctcaaccagggtcaggtgctctgtgcaatctttcttactgcttttccgttgggggttgtcgataaactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

27.08

Weight (kDa)

9.9

Isoelectric Point (pI)

47.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	247
AccB1I	GGYRCC	1 cut(s)	524
AccII	CGCG	1 cut(s)	425
AciI	CCGC	2 cut(s)	388, 423
AclWI	GGATC	1 cut(s)	309
AcoI	YGGCCR	2 cut(s)	389, 508
AcuI	CTGAAG	1 cut(s)	674
AcvI	CACGTG	1 cut(s)	239
AfaI	GTAC	2 cut(s)	58, 82
AfeI	AGCGCT	1 cut(s)	16
AfiI	CCNNNNNNNGG	4 cut(s)	328, 592, 673, 679
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	1 cut(s)	444
AjnI	CCWGG	3 cut(s)	165, 555, 672
AluBI	AGCT	2 cut(s)	282, 609
AluI	AGCT	2 cut(s)	282, 609
Alw21I	GWGCWC	1 cut(s)	687
Alw26I	GTCTC	3 cut(s)	103, 195, 421
AlwI	GGATC	1 cut(s)	309
Ama87I	CYCGRG	1 cut(s)	106
Aor51HI	AGCGCT	1 cut(s)	16
AoxI	GGCC	9 cut(s)	47, 102, 319, 377, 389, 508, 553, 583, 595
ApeKI	GCWGC	3 cut(s)	151, 227, 232
AspLEI	GCGC	3 cut(s)	17, 39, 232
AspS9I	GGNCC	3 cut(s)	553, 583, 595
AsuHPI	GGTGA	1 cut(s)	257
AvaI	CYCGRG	1 cut(s)	106
BaeGI	GKGCMC	2 cut(s)	289, 529
BanI	GGYRCC	1 cut(s)	524
BbrPI	CACGTG	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	687
BbvI	GCAGC	3 cut(s)	163, 214, 219
BccI	CCATC	5 cut(s)	69, 75, 331, 455, 630
BceAI	ACGGC	2 cut(s)	138, 523
BciT130I	CCWGG	3 cut(s)	167, 557, 674
BclI	TGATCA	1 cut(s)	199
BcoDI	GTCTC	3 cut(s)	103, 195, 421
BfaI	CTAG	3 cut(s)	12, 23, 498
BfmI	CTRYAG	1 cut(s)	610
BfoI	RGCGCY	2 cut(s)	18, 40
BfuAI	ACCTGC	1 cut(s)	247
BglI	GCCNNNNNGGC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	4 cut(s)	152, 228, 233, 389
BlsI	GCNGC	4 cut(s)	153, 229, 234, 390
Bme1390I	CCNGG	3 cut(s)	167, 557, 674
BmeT110I	CYCGRG	1 cut(s)	106
BmgT120I	GGNCC	3 cut(s)	553, 583, 595
BmiI	GGNNCC	1 cut(s)	526
BmrFI	CCNGG	3 cut(s)	167, 557, 674
BmrI	ACTGGG	1 cut(s)	181
BmuI	ACTGGG	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	560
Bsa29I	ATCGAT	1 cut(s)	73
BsaAI	YACGTR	1 cut(s)	239
BsaI	GGTCTC	1 cut(s)	103
BsaJI	CCNNGG	2 cut(s)	556, 673
Bsc4I	CCNNNNNNNGG	4 cut(s)	328, 592, 673, 679
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	498
BseBI	CCWGG	3 cut(s)	167, 557, 674
BseCI	ATCGAT	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	556, 673
BseLI	CCNNNNNNNGG	4 cut(s)	328, 592, 673, 679
BseMI	GCAATG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	187
BseSI	GKGCMC	2 cut(s)	289, 529
BseX3I	CGGCCG	1 cut(s)	389
BseXI	GCAGC	3 cut(s)	163, 214, 219
BseYI	CCCAGC	1 cut(s)	282
BsgI	GTGCAG	1 cut(s)	275
Bsh1236I	CGCG	1 cut(s)	425
Bsh1285I	CGRYCG	2 cut(s)	278, 392
BshFI	GGCC	9 cut(s)	49, 104, 321, 379, 391, 510, 555, 585, 597
BshNI	GGYRCC	1 cut(s)	524
BshVI	ATCGAT	1 cut(s)	73
BsiEI	CGRYCG	2 cut(s)	278, 392
BsiHKAI	GWGCWC	1 cut(s)	687
BsiHKCI	CYCGRG	1 cut(s)	106
BsiSI	CCGG	3 cut(s)	89, 392, 473
BslFI	GGGAC	2 cut(s)	385, 404
BslI	CCNNNNNNNGG	4 cut(s)	328, 592, 673, 679
BsmAI	GTCTC	3 cut(s)	103, 195, 421
BsmBI	CGTCTC	1 cut(s)	421
BsmFI	GGGAC	2 cut(s)	385, 404
BsnI	GGCC	9 cut(s)	49, 104, 321, 379, 391, 510, 555, 585, 597
Bso31I	GGTCTC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	106
Bsp1286I	GDGCHC	3 cut(s)	289, 529, 687
Bsp143I	GATC	3 cut(s)	199, 301, 649
BspACI	CCGC	2 cut(s)	388, 423
BspANI	GGCC	9 cut(s)	49, 104, 321, 379, 391, 510, 555, 585, 597
BspDI	ATCGAT	1 cut(s)	73
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	526
BspMI	ACCTGC	1 cut(s)	247
BspPI	GGATC	1 cut(s)	309
BspT107I	GGYRCC	1 cut(s)	524
BspTNI	GGTCTC	1 cut(s)	103
BsrDI	GCAATG	1 cut(s)	498
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	2 cut(s)	556, 673
BssMI	GATC	3 cut(s)	199, 301, 649
Bst2UI	CCWGG	3 cut(s)	167, 557, 674
Bst4CI	ACNGT	2 cut(s)	96, 253
Bst6I	CTCTTC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	239
BstC8I	GCNNGC	2 cut(s)	323, 393
BstEII	GGTNACC	1 cut(s)	263
BstENI	CCTNNNNNAGG	1 cut(s)	671
BstFNI	CGCG	1 cut(s)	425
BstH2I	RGCGCY	2 cut(s)	18, 40
BstHHI	GCGC	3 cut(s)	17, 39, 232
BstKTI	GATC	3 cut(s)	202, 304, 652
BstMAI	GTCTC	3 cut(s)	103, 195, 421
BstMBI	GATC	3 cut(s)	199, 301, 649
BstMCI	CGRYCG	2 cut(s)	278, 392
BstMWI	GCNNNNNNNGC	1 cut(s)	385
BstNI	CCWGG	3 cut(s)	167, 557, 674
BstNSI	RCATGY	1 cut(s)	455
BstPI	GGTNACC	1 cut(s)	263
BstSCI	CCNGG	3 cut(s)	165, 555, 672
BstSFI	CTRYAG	1 cut(s)	610
BstSLI	GKGCMC	2 cut(s)	289, 529
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	3 cut(s)	163, 214, 219
BstX2I	RGATCY	2 cut(s)	301, 649
BstYI	RGATCY	2 cut(s)	301, 649
BstZI	CGGCCG	1 cut(s)	389
Bsu15I	ATCGAT	1 cut(s)	73
BsuRI	GGCC	9 cut(s)	49, 104, 321, 379, 391, 510, 555, 585, 597
BsuTUI	ATCGAT	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	92
BveI	ACCTGC	1 cut(s)	247
Cac8I	GCNNGC	2 cut(s)	323, 393
CfoI	GCGC	3 cut(s)	17, 39, 232
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	3 cut(s)	553, 583, 595
ClaI	ATCGAT	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	57, 81
CviAII	CATG	5 cut(s)	133, 203, 355, 363, 452
CviQI	GTAC	2 cut(s)	57, 81
DpnI	GATC	3 cut(s)	201, 303, 651
DpnII	GATC	3 cut(s)	199, 301, 649
EaeI	YGGCCR	2 cut(s)	389, 508
EagI	CGGCCG	1 cut(s)	389
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EclXI	CGGCCG	1 cut(s)	389
Eco31I	GGTCTC	1 cut(s)	103
Eco47III	AGCGCT	1 cut(s)	16
Eco52I	CGGCCG	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	674
Eco72I	CACGTG	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	106
Eco91I	GGTNACC	1 cut(s)	263
EcoNI	CCTNNNNNAGG	1 cut(s)	671
EcoO109I	RGGNCCY	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	263
EcoRII	CCWGG	3 cut(s)	165, 555, 672
Esp3I	CGTCTC	1 cut(s)	421
FaeI	CATG	5 cut(s)	136, 206, 358, 366, 455
FaiI	YATR	6 cut(s)	134, 204, 356, 364, 453, 612
FaqI	GGGAC	2 cut(s)	385, 404
FatI	CATG	5 cut(s)	132, 202, 354, 362, 451
FauI	CCCGC	1 cut(s)	430
FbaI	TGATCA	1 cut(s)	199
Fnu4HI	GCNGC	4 cut(s)	152, 228, 233, 389
Fsp4HI	GCNGC	4 cut(s)	152, 228, 233, 389
FspBI	CTAG	3 cut(s)	12, 23, 498
GlaI	GCGC	3 cut(s)	16, 38, 231
GluI	GCNGC	4 cut(s)	152, 228, 233, 389
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	2 cut(s)	18, 40
HaeIII	GGCC	9 cut(s)	49, 104, 321, 379, 391, 510, 555, 585, 597
HapII	CCGG	3 cut(s)	89, 392, 473
HhaI	GCGC	3 cut(s)	17, 39, 232
Hin1II	CATG	5 cut(s)	136, 206, 358, 366, 455
Hin6I	GCGC	3 cut(s)	15, 37, 230
HinP1I	GCGC	3 cut(s)	15, 37, 230
HincII	GTYRAC	1 cut(s)	505
HindII	GTYRAC	1 cut(s)	505
HinfI	GANTC	5 cut(s)	175, 270, 417, 440, 661
HpaII	CCGG	3 cut(s)	89, 392, 473
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	505
Hpy188I	TCNGA	5 cut(s)	199, 275, 294, 654, 737
Hpy188III	TCNNGA	2 cut(s)	108, 577
Hpy8I	GTNNAC	1 cut(s)	505
Hpy99I	CGWCG	1 cut(s)	175
HpyAV	CCTTC	4 cut(s)	51, 95, 362, 574
HpyCH4III	ACNGT	2 cut(s)	96, 253
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	2 cut(s)	256, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	385
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	5 cut(s)	136, 206, 358, 366, 455
HspAI	GCGC	3 cut(s)	15, 37, 230
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	199, 301, 649
Lsp1109I	GCAGC	3 cut(s)	163, 214, 219
MaeI	CTAG	3 cut(s)	12, 23, 498
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	2 cut(s)	263, 570
MalI	GATC	3 cut(s)	201, 303, 651
MboI	GATC	3 cut(s)	199, 301, 649
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	2 cut(s)	301, 649
MhlI	GDGCHC	3 cut(s)	289, 529, 687
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	3 cut(s)	169, 264, 426
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	7 cut(s)	60, 115, 216, 369, 390, 471, 677
MroNI	GCCGGC	1 cut(s)	391
MspI	CCGG	3 cut(s)	89, 392, 473
MspR9I	CCNGG	3 cut(s)	167, 557, 674
MvaI	CCWGG	3 cut(s)	167, 557, 674
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	1 cut(s)	385
NaeI	GCCGGC	1 cut(s)	393
NdeII	GATC	3 cut(s)	199, 301, 649
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	5 cut(s)	136, 206, 358, 366, 455
NlaIV	GGNNCC	1 cut(s)	526
NmuCI	GTSAC	1 cut(s)	263
NspI	RCATGY	1 cut(s)	455
PaeR7I	CTCGAG	1 cut(s)	106
PciI	ACATGT	1 cut(s)	451
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	440, 661
PkrI	GCNGC	4 cut(s)	153, 229, 234, 390
PleI	GAGTC	3 cut(s)	169, 264, 425
PmaCI	CACGTG	1 cut(s)	239
PmlI	CACGTG	1 cut(s)	239
PpsI	GAGTC	3 cut(s)	169, 264, 425
Ppu21I	YACGTR	1 cut(s)	239
PscI	ACATGT	1 cut(s)	451
Psp6I	CCWGG	3 cut(s)	165, 555, 672
PspCI	CACGTG	1 cut(s)	239
PspEI	GGTNACC	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	3 cut(s)	165, 555, 672
PspN4I	GGNNCC	1 cut(s)	526
PspPI	GGNCC	3 cut(s)	553, 583, 595
PsuI	RGATCY	2 cut(s)	301, 649
RsaI	GTAC	2 cut(s)	58, 82
RsaNI	GTAC	2 cut(s)	57, 81
SatI	GCNGC	4 cut(s)	152, 228, 233, 389
Sau3AI	GATC	3 cut(s)	199, 301, 649
Sau96I	GGNCC	3 cut(s)	553, 583, 595
SchI	GAGTC	3 cut(s)	169, 264, 426
ScrFI	CCNGG	3 cut(s)	167, 557, 674
SduI	GDGCHC	3 cut(s)	289, 529, 687
SetI	ASST	9 cut(s)	13, 62, 115, 241, 261, 284, 438, 611, 684
SfcI	CTRYAG	1 cut(s)	610
Sfr274I	CTCGAG	1 cut(s)	106
SlaI	CTCGAG	1 cut(s)	106
SmlI	CTYRAG	2 cut(s)	106, 575
SmoI	CTYRAG	2 cut(s)	106, 575
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	388, 423
SspMI	CTAG	3 cut(s)	12, 23, 498
StyD4I	CCNGG	3 cut(s)	165, 555, 672
TaaI	ACNGT	2 cut(s)	96, 253
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	4 cut(s)	73, 107, 415, 726
TaqII	GACCGA	1 cut(s)	292
TasI	AATT	1 cut(s)	382
TauI	GCSGC	1 cut(s)	391
TfiI	GAWTC	2 cut(s)	440, 661
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	151, 227, 232
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	99
XagI	CCTNNNNNAGG	1 cut(s)	671
XceI	RCATGY	1 cut(s)	455
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	106
XspI	CTAG	3 cut(s)	12, 23, 498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.