FvH4_5g16981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008105
Physical Location & Seq
Reverse (-)
9678629 .. 9679107
479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g16981.t1

Sequence Viewer

Length: 393 bp
ATGGCCTCTGCCATGCCTATTTCACGACAAGCATGTCTATCGGCGATGAACATCACTCTGGGTAGTGCGGTTGTGCAGATTGGTGGGTTTGGATCGGTTTCAATTGTCAATCGTATCCAACCGAATCGAGCACGCCTCAAAGCAGTCTTGTTGGAGAGATATGAGTCTGGGGTGTTGAGACCCTTATTGGGTCGGCTATTGTTTGCAGGGAAGGTGGTTGAGATGATGATTGATCGACAACCGGAATTTGGTTCTGGTGGGAATCAGGGTTTGTTCTCAGCAATCCATCTTAAGACTCCCCACTGTTTGGATGGTGGCTGGGCATGCTTCCGAACTCCTCTGACGGCGGAGGCGATTGGACATGAATCAAGGGCGGGGCAGATCTGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.02

Weight (kDa)

9.74

Isoelectric Point (pI)

40.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 33
AccB7I CCANNNNNTGG 1 cut(s) 307
AciI CCGC 3 cut(s) 68, 347, 374
AclWI GGATC 1 cut(s) 100
AcsI RAATTY 1 cut(s) 245
AfiI CCNNNNNNNGG 3 cut(s) 188, 248, 307
AflII CTTAAG 1 cut(s) 290
AgsI TTSAA 1 cut(s) 102
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 172
AlwI GGATC 1 cut(s) 100
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 133
BccI CCATC 2 cut(s) 294, 305
BceAI ACGGC 1 cut(s) 360
BcgI CGANNNNNNTGC 2 cut(s) 21, 55
BciVI GTATCC 1 cut(s) 125
BcoDI GTCTC 1 cut(s) 172
BfrI CTTAAG 1 cut(s) 290
BfuI GTATCC 1 cut(s) 125
BglII AGATCT 1 cut(s) 381
BplI GAGNNNNNCTC 2 cut(s) 120, 152
BsaBI GATNNNNATC 1 cut(s) 50
BsaI GGTCTC 1 cut(s) 172
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 3 cut(s) 188, 248, 307
Bse8I GATNNNNATC 1 cut(s) 50
BseGI GGATG 1 cut(s) 316
BseJI GATNNNNATC 1 cut(s) 50
BseLI CCNNNNNNNGG 3 cut(s) 188, 248, 307
BseMII CTCAG 1 cut(s) 291
BseRI GAGGAG 1 cut(s) 327
BseYI CCCAGC 1 cut(s) 318
BsgI GTGCAG 1 cut(s) 95
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 1 cut(s) 242
BslI CCNNNNNNNGG 3 cut(s) 188, 248, 307
BsmAI GTCTC 1 cut(s) 172
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 172
Bsp1286I GDGCHC 1 cut(s) 133
Bsp143I GATC 3 cut(s) 92, 232, 381
BspACI CCGC 3 cut(s) 68, 347, 374
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 290
BspPI GGATC 1 cut(s) 100
BspTI CTTAAG 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 172
BssMI GATC 3 cut(s) 92, 232, 381
Bst4CI ACNGT 1 cut(s) 305
BstAFI CTTAAG 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 133, 325
BstDEI CTNAG 1 cut(s) 277
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 3 cut(s) 95, 235, 384
BstMAI GTCTC 1 cut(s) 172
BstMBI GATC 3 cut(s) 92, 232, 381
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNSI RCATGY 2 cut(s) 36, 327
BstX2I RGATCY 1 cut(s) 381
BstYI RGATCY 1 cut(s) 381
BsuI GTATCC 1 cut(s) 125
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 301
Cac8I GCNNGC 2 cut(s) 133, 325
CviAII CATG 4 cut(s) 13, 33, 324, 362
CviJI RGCY 3 cut(s) 5, 196, 318
CviKI_1 RGCY 3 cut(s) 5, 196, 318
DdeI CTNAG 1 cut(s) 277
DpnI GATC 3 cut(s) 94, 234, 383
DpnII GATC 3 cut(s) 92, 232, 381
DrdI GACNNNNNNGTC 1 cut(s) 33
DseDI GACNNNNNNGTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 362
Eco31I GGTCTC 1 cut(s) 172
FaeI CATG 4 cut(s) 16, 36, 327, 365
FaiI YATR 5 cut(s) 14, 34, 162, 325, 363
FatI CATG 4 cut(s) 12, 32, 323, 361
FauI CCCGC 1 cut(s) 367
FokI GGATG 1 cut(s) 323
GsaI CCCAGC 1 cut(s) 322
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 242
Hin1II CATG 4 cut(s) 16, 36, 327, 365
HinfI GANTC 5 cut(s) 124, 164, 262, 295, 365
HpaII CCGG 1 cut(s) 242
Hpy188I TCNGA 2 cut(s) 332, 342
Hpy188III TCNNGA 1 cut(s) 24
HpyAV CCTTC 1 cut(s) 205
HpyCH4III ACNGT 1 cut(s) 305
HpyCH4V TGCA 2 cut(s) 76, 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 1 cut(s) 277
Hsp92II CATG 4 cut(s) 16, 36, 327, 365
Kzo9I GATC 3 cut(s) 92, 232, 381
LpnPI CCDG 8 cut(s) 44, 153, 192, 240, 251, 255, 304, 370
MalI GATC 3 cut(s) 94, 234, 383
MboI GATC 3 cut(s) 92, 232, 381
MfeI CAATTG 1 cut(s) 102
MflI RGATCY 1 cut(s) 381
MhlI GDGCHC 1 cut(s) 133
MluCI AATT 2 cut(s) 102, 245
MlyI GAGTC 2 cut(s) 173, 289
MmeI TCCRAC 2 cut(s) 132, 142
MnlI CCTC 4 cut(s) 16, 146, 343, 348
MseI TTAA 1 cut(s) 291
MspCI CTTAAG 1 cut(s) 290
MspI CCGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 102
MwoI GCNNNNNNNGC 1 cut(s) 324
NdeII GATC 3 cut(s) 92, 232, 381
NlaIII CATG 4 cut(s) 16, 36, 327, 365
NspI RCATGY 2 cut(s) 36, 327
PaeI GCATGC 1 cut(s) 327
PcsI WCGNNNNNNNCGW 1 cut(s) 350
PfeI GAWTC 3 cut(s) 124, 262, 365
PflMI CCANNNNNTGG 1 cut(s) 307
PleI GAGTC 2 cut(s) 172, 289
PpsI GAGTC 2 cut(s) 172, 289
PspFI CCCAGC 1 cut(s) 318
PsuI RGATCY 1 cut(s) 381
SaqAI TTAA 1 cut(s) 291
Sau3AI GATC 3 cut(s) 92, 232, 381
SchI GAGTC 2 cut(s) 173, 289
SduI GDGCHC 1 cut(s) 133
SetI ASST 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SphI GCATGC 1 cut(s) 327
Sse9I AATT 2 cut(s) 102, 245
SsiI CCGC 3 cut(s) 68, 347, 374
TaaI ACNGT 1 cut(s) 305
TaqI TCGA 2 cut(s) 127, 235
TasI AATT 2 cut(s) 102, 245
TfiI GAWTC 3 cut(s) 124, 262, 365
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TscAI CASTG 1 cut(s) 308
TspDTI ATGAA 2 cut(s) 62, 378
TspRI CASTG 1 cut(s) 308
Van91I CCANNNNNTGG 1 cut(s) 307
Vha464I CTTAAG 1 cut(s) 290
XapI RAATTY 1 cut(s) 245
XceI RCATGY 2 cut(s) 36, 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.