Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

32816096 .. 32816647

Gene Structure 552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31685

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGCTGGCATGCGCAGTTCGGCGTAGTCAGAAGCAAATTGTCGGATTTACTTGGAGTACTCCAGGTAACACATGGTGCTGGGCTTGGAGGAAGGGTCTACATCAGATCCGAATATGGGTTCCAGGTGGGTCTTGGACCCGACCCAGGATCTTGTCACAACTTTTCTATTGGGTTCCCTTCCAATTATTGCACTGGCTTTGGGATCCTGATGTTTATTTGTATTGGGTTGAGGACTCAAGATTATGGTATTTGTTCGAAAGGGATCGTATGCCAACACGGCCATGTTCTGACACCCTTGGCCGGCTTAGATCTTTTGATAGAAGATTGCCCTCTGTTCTTTCTCATATTGACTTTTGTCATTATGTGAGTTGGATATGCATGGGTAGTCATACCATCGACTACAACATTCACTACACGGCAGCATTTTGTAGTGGTAAAACAACGCTTGCGCTATTGCTATATTCCTATTTTCTTGTATTTTTGATGCAATTGTTGCGCCTTTTTTCTTCTTCAGAAAGTTTGTACCTTGAAATTATTTTTAATTATCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

22.04

Weight (kDa)

9.11

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	13
AccI	GTMKAC	1 cut(s)	97
AclWI	GGATC	5 cut(s)	100, 155, 197, 210, 270
AcoI	YGGCCR	2 cut(s)	278, 298
AcuI	CTGAAG	1 cut(s)	495
AdeI	CACNNNGTG	1 cut(s)	75
AfaI	GTAC	2 cut(s)	58, 524
AfiI	CCNNNNNNNGG	3 cut(s)	115, 144, 300
AgsI	TTSAA	1 cut(s)	530
AjnI	CCWGG	3 cut(s)	61, 121, 143
AlwI	GGATC	5 cut(s)	100, 155, 197, 210, 270
AoxI	GGCC	2 cut(s)	278, 298
ApeKI	GCWGC	1 cut(s)	419
AspLEI	GCGC	3 cut(s)	14, 451, 498
AspS9I	GGNCC	1 cut(s)	135
AsuII	TTCGAA	1 cut(s)	255
AvaII	GGWCC	1 cut(s)	135
BamHI	GGATCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	431
BccI	CCATC	1 cut(s)	401
BceAI	ACGGC	2 cut(s)	293, 432
BciT130I	CCWGG	3 cut(s)	63, 123, 145
BglI	GCCNNNNNGGC	1 cut(s)	277
BglII	AGATCT	1 cut(s)	308
BisI	GCNGC	1 cut(s)	420
BlsI	GCNGC	1 cut(s)	421
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	3 cut(s)	63, 123, 145
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	4 cut(s)	120, 137, 174, 204
BmrFI	CCNGG	3 cut(s)	63, 123, 145
BmsI	GCATC	1 cut(s)	474
BoxI	GACNNNNGTC	1 cut(s)	354
BpmI	CTGGAG	1 cut(s)	45
Bpu14I	TTCGAA	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	220
BsaJI	CCNNGG	2 cut(s)	143, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	79, 109
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 144, 300
Bse118I	RCCGGY	1 cut(s)	300
Bse1I	ACTGG	1 cut(s)	197
BseBI	CCWGG	3 cut(s)	63, 123, 145
BseDI	CCNNGG	2 cut(s)	143, 295
BseLI	CCNNNNNNNGG	3 cut(s)	115, 144, 300
BseNI	ACTGG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	431
BseYI	CCCAGC	1 cut(s)	78
BshFI	GGCC	2 cut(s)	280, 300
BsiSI	CCGG	1 cut(s)	301
BslI	CCNNNNNNNGG	3 cut(s)	115, 144, 300
BsnI	GGCC	2 cut(s)	280, 300
Bsp119I	TTCGAA	1 cut(s)	255
Bsp143I	GATC	5 cut(s)	105, 147, 202, 262, 308
BspANI	GGCC	2 cut(s)	280, 300
BspLI	GGNNCC	4 cut(s)	120, 137, 174, 204
BspPI	GGATC	5 cut(s)	100, 155, 197, 210, 270
BspT104I	TTCGAA	1 cut(s)	255
BsrFI	RCCGGY	1 cut(s)	300
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	300
BssECI	CCNNGG	2 cut(s)	143, 295
BssMI	GATC	5 cut(s)	105, 147, 202, 262, 308
BssT1I	CCWWGG	1 cut(s)	295
Bst2UI	CCWGG	3 cut(s)	63, 123, 145
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstBI	TTCGAA	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	6, 10, 302, 447
BstDEI	CTNAG	1 cut(s)	305
BstHHI	GCGC	3 cut(s)	14, 451, 498
BstKTI	GATC	5 cut(s)	108, 150, 205, 265, 311
BstMBI	GATC	5 cut(s)	105, 147, 202, 262, 308
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 493
BstNI	CCWGG	3 cut(s)	63, 123, 145
BstNSI	RCATGY	1 cut(s)	12
BstPAI	GACNNNNGTC	1 cut(s)	354
BstSCI	CCNGG	3 cut(s)	61, 121, 143
BstV1I	GCAGC	1 cut(s)	431
BstX2I	RGATCY	4 cut(s)	105, 147, 202, 308
BstYI	RGATCY	4 cut(s)	105, 147, 202, 308
BsuRI	GGCC	2 cut(s)	280, 300
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	4 cut(s)	6, 10, 302, 447
CfoI	GCGC	3 cut(s)	14, 451, 498
Cfr10I	RCCGGY	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	135
Csp6I	GTAC	2 cut(s)	57, 523
CviAII	CATG	4 cut(s)	9, 72, 282, 379
CviJI	RGCY	5 cut(s)	83, 196, 280, 300, 304
CviKI_1	RGCY	5 cut(s)	83, 196, 280, 300, 304
CviQI	GTAC	2 cut(s)	57, 523
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	5 cut(s)	107, 149, 204, 264, 310
DpnII	GATC	5 cut(s)	105, 147, 202, 262, 308
DraIII	CACNNNGTG	1 cut(s)	75
EaeI	YGGCCR	2 cut(s)	278, 298
Eco130I	CCWWGG	1 cut(s)	295
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	495
EcoRII	CCWGG	3 cut(s)	61, 121, 143
EcoT14I	CCWWGG	1 cut(s)	295
EcoT22I	ATGCAT	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	295
FaeI	CATG	4 cut(s)	12, 75, 285, 382
FatI	CATG	4 cut(s)	8, 71, 281, 378
FblI	GTMKAC	1 cut(s)	97
Fnu4HI	GCNGC	1 cut(s)	420
Fsp4HI	GCNGC	1 cut(s)	420
FspI	TGCGCA	1 cut(s)	13
GlaI	GCGC	3 cut(s)	13, 450, 497
GluI	GCNGC	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	82
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	280, 300
HapII	CCGG	1 cut(s)	301
HhaI	GCGC	3 cut(s)	14, 451, 498
Hin1II	CATG	4 cut(s)	12, 75, 285, 382
Hin6I	GCGC	3 cut(s)	12, 449, 496
HinP1I	GCGC	3 cut(s)	12, 449, 496
HinfI	GANTC	1 cut(s)	233
HpaII	CCGG	1 cut(s)	301
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188I	TCNGA	6 cut(s)	30, 44, 105, 110, 289, 514
Hpy188III	TCNNGA	2 cut(s)	206, 237
Hpy8I	GTNNAC	1 cut(s)	98
HpyAV	CCTTC	2 cut(s)	85, 187
HpyCH4V	TGCA	3 cut(s)	190, 378, 487
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 493
HpyF3I	CTNAG	1 cut(s)	305
Hsp92II	CATG	4 cut(s)	12, 75, 285, 382
HspAI	GCGC	3 cut(s)	12, 449, 496
KroI	GCCGGC	1 cut(s)	300
KroNI	GCCGGC	1 cut(s)	302
Kzo9I	GATC	5 cut(s)	105, 147, 202, 262, 308
Lsp1109I	GCAGC	1 cut(s)	431
LweI	GCATC	1 cut(s)	474
MaeIII	GTNAC	2 cut(s)	65, 153
MalI	GATC	5 cut(s)	107, 149, 204, 264, 310
MboI	GATC	5 cut(s)	105, 147, 202, 262, 308
MboII	GAAGA	3 cut(s)	333, 498, 501
MfeI	CAATTG	1 cut(s)	488
MflI	RGATCY	4 cut(s)	105, 147, 202, 308
MluCI	AATT	5 cut(s)	36, 182, 488, 531, 541
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	2 cut(s)	22, 350
MnlI	CCTC	3 cut(s)	81, 223, 340
Mph1103I	ATGCAT	1 cut(s)	380
MroNI	GCCGGC	1 cut(s)	300
MseI	TTAA	1 cut(s)	540
MslI	CAYNNNNRTG	1 cut(s)	280
MspI	CCGG	1 cut(s)	301
MspR9I	CCNGG	3 cut(s)	63, 123, 145
MunI	CAATTG	1 cut(s)	488
MvaI	CCWGG	3 cut(s)	63, 123, 145
MwoI	GCNNNNNNNGC	2 cut(s)	277, 493
NaeI	GCCGGC	1 cut(s)	302
NdeII	GATC	5 cut(s)	105, 147, 202, 262, 308
NgoMIV	GCCGGC	1 cut(s)	300
NlaIII	CATG	4 cut(s)	12, 75, 285, 382
NlaIV	GGNNCC	4 cut(s)	120, 137, 174, 204
NmuCI	GTSAC	1 cut(s)	153
NsbI	TGCGCA	1 cut(s)	13
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	1 cut(s)	12
NspV	TTCGAA	1 cut(s)	255
PaeI	GCATGC	1 cut(s)	12
PdiI	GCCGGC	1 cut(s)	302
PkrI	GCNGC	1 cut(s)	421
PleI	GAGTC	1 cut(s)	227
PpsI	GAGTC	1 cut(s)	227
PshAI	GACNNNNGTC	1 cut(s)	354
Psp6I	CCWGG	3 cut(s)	61, 121, 143
PspFI	CCCAGC	1 cut(s)	78
PspGI	CCWGG	3 cut(s)	61, 121, 143
PspN4I	GGNNCC	4 cut(s)	120, 137, 174, 204
PspPI	GGNCC	1 cut(s)	135
PsuI	RGATCY	4 cut(s)	105, 147, 202, 308
RsaI	GTAC	2 cut(s)	58, 524
RsaNI	GTAC	2 cut(s)	57, 523
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	540
SatI	GCNGC	1 cut(s)	420
Sau3AI	GATC	5 cut(s)	105, 147, 202, 262, 308
Sau96I	GGNCC	1 cut(s)	135
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	3 cut(s)	63, 123, 145
SetI	ASST	3 cut(s)	67, 127, 528
SfaNI	GCATC	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	255
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	280
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
SphI	GCATGC	1 cut(s)	12
Sse9I	AATT	5 cut(s)	36, 182, 488, 531, 541
StyD4I	CCNGG	3 cut(s)	61, 121, 143
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	2 cut(s)	255, 396
TasI	AATT	5 cut(s)	36, 182, 488, 531, 541
TatI	WGTACW	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	540
Tru9I	TTAA	1 cut(s)	540
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	153
TseI	GCWGC	1 cut(s)	419
Tsp45I	GTSAC	1 cut(s)	153
TspRI	CASTG	1 cut(s)	197
VpaK11BI	GGWCC	1 cut(s)	135
XceI	RCATGY	1 cut(s)	12
XcmI	CCANNNNNNNNNTGG	2 cut(s)	69, 129
XmiI	GTMKAC	1 cut(s)	97
ZrmI	AGTACT	1 cut(s)	58
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.