Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

27295925 .. 27297535

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028742

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAACTTCTTTCAGGCCTCGGCCTGTTCTTGAAGTGCCTCGCCCTTTTGGGAGGCGCGGTTGTGTCGGAGTGCACCGGTGGTTCTGGGTTGGAGGATAGCGGTTGTCCTTCATTGATGGTGGTGATCGGTGATGGTGGTTGCTGGTCTGATTGGAATCCAGATCGAGGGGTGGCCTCGGTGGTTCTCTTCTGCTGCGTTCTTCATGAATCGGATCGTCTTTATGGCGGCTCTACTGTAGGGACCGCGTGGGGGACGAGTATTGTTGGGCCGAAGTTGTTGGTTGACTGGGTTTTGGTTCTACAGCAGTGGGGGTTAAATTCCATGATTGTAGAGGCAGTGGAGGGGTTGGGATCGCACCGCCGGCTGCGGCCTTGTATGTTGCGACCTAGGAGAAACTCTTTAGTTGTTGAAGAAATCTTTTATTTGGTGATTTTTACGGTAGCTAGAGTTGTGAGAATGTATGTTGGGGTAACCTTAAGGAGATACAGAGCTATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.05

Weight (kDa)

7.57

Isoelectric Point (pI)

42.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	59, 248
AciI	CCGC	6 cut(s)	59, 102, 228, 246, 361, 370
AclWI	GGATC	2 cut(s)	222, 361
AcsI	RAATTY	1 cut(s)	319
AfiI	CCNNNNNNNGG	2 cut(s)	167, 252
AflII	CTTAAG	1 cut(s)	478
AgeI	ACCGGT	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	34, 413
AluBI	AGCT	2 cut(s)	446, 494
AluI	AGCT	2 cut(s)	446, 494
Alw21I	GWGCWC	1 cut(s)	77
Alw44I	GTGCAC	1 cut(s)	73
AlwI	GGATC	2 cut(s)	222, 361
AoxI	GGCC	5 cut(s)	16, 22, 174, 269, 371
ApaLI	GTGCAC	1 cut(s)	73
ApeKI	GCWGC	2 cut(s)	195, 367
ApoI	RAATTY	1 cut(s)	319
AsiGI	ACCGGT	1 cut(s)	77
AspA2I	CCTAGG	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	2 cut(s)	243, 269
AsuHPI	GGTGA	3 cut(s)	136, 143, 442
AvaII	GGWCC	1 cut(s)	243
AvrII	CCTAGG	1 cut(s)	389
BaeGI	GKGCMC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	2 cut(s)	182, 354
BccI	CCATC	2 cut(s)	112, 128
BfaI	CTAG	2 cut(s)	390, 447
BfmI	CTRYAG	2 cut(s)	237, 302
BfrI	CTTAAG	1 cut(s)	478
BisI	GCNGC	4 cut(s)	196, 229, 368, 371
BlnI	CCTAGG	1 cut(s)	389
BlsI	GCNGC	4 cut(s)	197, 230, 369, 372
Bme18I	GGWCC	1 cut(s)	243
BmgT120I	GGNCC	2 cut(s)	243, 269
BmiI	GGNNCC	1 cut(s)	244
BmrI	ACTGGG	1 cut(s)	298
BmuI	ACTGGG	1 cut(s)	298
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	19, 177, 389
BsaWI	WCCGGW	1 cut(s)	77
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 252
Bse118I	RCCGGY	2 cut(s)	77, 363
Bse1I	ACTGG	1 cut(s)	293
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	3 cut(s)	19, 177, 389
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	167, 252
BseNI	ACTGG	1 cut(s)	293
BseSI	GKGCMC	1 cut(s)	77
BseXI	GCAGC	2 cut(s)	182, 354
Bsh1236I	CGCG	2 cut(s)	59, 248
BshFI	GGCC	5 cut(s)	18, 24, 176, 271, 373
BshTI	ACCGGT	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	78, 364
BslFI	GGGAC	2 cut(s)	256, 268
BslI	CCNNNNNNNGG	2 cut(s)	167, 252
BsmFI	GGGAC	2 cut(s)	256, 268
BsnI	GGCC	5 cut(s)	18, 24, 176, 271, 373
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	4 cut(s)	126, 163, 214, 353
BspACI	CCGC	6 cut(s)	59, 102, 228, 246, 361, 370
BspANI	GGCC	5 cut(s)	18, 24, 176, 271, 373
BspFNI	CGCG	2 cut(s)	59, 248
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	222, 361
BspTI	CTTAAG	1 cut(s)	478
BsrFI	RCCGGY	2 cut(s)	77, 363
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	2 cut(s)	77, 363
BssECI	CCNNGG	3 cut(s)	19, 177, 389
BssMI	GATC	4 cut(s)	126, 163, 214, 353
BssT1I	CCWWGG	1 cut(s)	389
Bst4CI	ACNGT	2 cut(s)	238, 442
Bst6I	CTCTTC	1 cut(s)	194
BstAFI	CTTAAG	1 cut(s)	478
BstC8I	GCNNGC	1 cut(s)	365
BstEII	GGTNACC	1 cut(s)	472
BstFNI	CGCG	2 cut(s)	59, 248
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	4 cut(s)	129, 166, 217, 356
BstMBI	GATC	4 cut(s)	126, 163, 214, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstPI	GGTNACC	1 cut(s)	472
BstSFI	CTRYAG	2 cut(s)	237, 302
BstSLI	GKGCMC	1 cut(s)	77
BstUI	CGCG	2 cut(s)	59, 248
BstV1I	GCAGC	2 cut(s)	182, 354
BsuRI	GGCC	5 cut(s)	18, 24, 176, 271, 373
BtsI	GCAGTG	2 cut(s)	314, 345
BtsIMutI	CAGTG	2 cut(s)	314, 345
Cac8I	GCNNGC	1 cut(s)	365
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	59
Cfr10I	RCCGGY	2 cut(s)	77, 363
Cfr13I	GGNCC	2 cut(s)	243, 269
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	2 cut(s)	206, 325
CviJI	RGCY	9 cut(s)	18, 24, 176, 231, 271, 367, 373, 446, 494
CviKI_1	RGCY	9 cut(s)	18, 24, 176, 231, 271, 367, 373, 446, 494
DpnI	GATC	4 cut(s)	128, 165, 216, 355
DpnII	GATC	4 cut(s)	126, 163, 214, 353
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco130I	CCWWGG	1 cut(s)	389
Eco147I	AGGCCT	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	243
Eco91I	GGTNACC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	472
EcoT14I	CCWWGG	1 cut(s)	389
ErhI	CCWWGG	1 cut(s)	389
FaeI	CATG	2 cut(s)	209, 328
FaiI	YATR	5 cut(s)	207, 225, 326, 380, 465
FaqI	GGGAC	2 cut(s)	256, 268
FatI	CATG	2 cut(s)	205, 324
Fnu4HI	GCNGC	4 cut(s)	196, 229, 368, 371
Fsp4HI	GCNGC	4 cut(s)	196, 229, 368, 371
FspBI	CTAG	2 cut(s)	390, 447
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	4 cut(s)	196, 229, 368, 371
HaeIII	GGCC	5 cut(s)	18, 24, 176, 271, 373
HapII	CCGG	2 cut(s)	78, 364
HhaI	GCGC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	209, 328
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HincII	GTYRAC	1 cut(s)	286
HindII	GTYRAC	1 cut(s)	286
HinfI	GANTC	2 cut(s)	157, 209
HpaII	CCGG	2 cut(s)	78, 364
HphI	GGTGA	3 cut(s)	136, 143, 442
Hpy166II	GTNNAC	2 cut(s)	75, 286
Hpy188I	TCNGA	3 cut(s)	70, 151, 214
Hpy188III	TCNNGA	3 cut(s)	31, 161, 206
Hpy8I	GTNNAC	2 cut(s)	75, 286
HpyAV	CCTTC	1 cut(s)	120
HpyCH4III	ACNGT	2 cut(s)	238, 442
HpyCH4V	TGCA	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	209, 328
HspAI	GCGC	1 cut(s)	57
KroI	GCCGGC	1 cut(s)	363
KroNI	GCCGGC	1 cut(s)	365
Kzo9I	GATC	4 cut(s)	126, 163, 214, 353
LpnPI	CCDG	7 cut(s)	38, 72, 91, 130, 174, 274, 377
Lsp1109I	GCAGC	2 cut(s)	182, 354
MaeI	CTAG	2 cut(s)	390, 447
MaeIII	GTNAC	1 cut(s)	472
MalI	GATC	4 cut(s)	128, 165, 216, 355
MboI	GATC	4 cut(s)	126, 163, 214, 353
MboII	GAAGA	3 cut(s)	181, 194, 425
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	319
MmeI	TCCRAC	2 cut(s)	48, 72
MnlI	CCTC	8 cut(s)	29, 47, 50, 88, 161, 187, 328, 337
MroNI	GCCGGC	1 cut(s)	363
MseI	TTAA	2 cut(s)	317, 479
MspCI	CTTAAG	1 cut(s)	478
MspI	CCGG	2 cut(s)	78, 364
MvnI	CGCG	2 cut(s)	59, 248
MwoI	GCNNNNNNNGC	1 cut(s)	364
NaeI	GCCGGC	1 cut(s)	365
NdeII	GATC	4 cut(s)	126, 163, 214, 353
NgoMIV	GCCGGC	1 cut(s)	363
NlaIII	CATG	2 cut(s)	209, 328
NlaIV	GGNNCC	1 cut(s)	244
PagI	TCATGA	1 cut(s)	205
PceI	AGGCCT	1 cut(s)	18
PdiI	GCCGGC	1 cut(s)	365
PfeI	GAWTC	2 cut(s)	157, 209
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	197, 230, 369, 372
PspEI	GGTNACC	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	2 cut(s)	243, 269
SaqAI	TTAA	2 cut(s)	317, 479
SatI	GCNGC	4 cut(s)	196, 229, 368, 371
Sau3AI	GATC	4 cut(s)	126, 163, 214, 353
Sau96I	GGNCC	2 cut(s)	243, 269
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	4 cut(s)	391, 448, 479, 496
SfcI	CTRYAG	2 cut(s)	237, 302
SgrAI	CRCCGGYG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	1 cut(s)	319
SseBI	AGGCCT	1 cut(s)	18
SsiI	CCGC	6 cut(s)	59, 102, 228, 246, 361, 370
SspMI	CTAG	2 cut(s)	390, 447
StuI	AGGCCT	1 cut(s)	18
StyI	CCWWGG	1 cut(s)	389
TaaI	ACNGT	2 cut(s)	238, 442
TaqI	TCGA	1 cut(s)	166
TasI	AATT	1 cut(s)	319
TauI	GCSGC	2 cut(s)	231, 373
TfiI	GAWTC	2 cut(s)	157, 209
Tru1I	TTAA	2 cut(s)	317, 479
Tru9I	TTAA	2 cut(s)	317, 479
TscAI	CASTG	2 cut(s)	314, 345
TseI	GCWGC	2 cut(s)	195, 367
TspDTI	ATGAA	3 cut(s)	102, 194, 222
TspRI	CASTG	2 cut(s)	314, 345
Vha464I	CTTAAG	1 cut(s)	478
VneI	GTGCAC	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	243
XapI	RAATTY	1 cut(s)	319
XmaJI	CCTAGG	1 cut(s)	389
XspI	CTAG	2 cut(s)	390, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.