Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

11534617 .. 11535117

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g13181.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCCGGCACCGTCCTCGGTGGTGCTCCCTGTGTGCATGGTCTCTGTCGTGCCTCTTTCACGTCAAGCACGTCGACCGGCAACGAACATCACTCTGGGTAGTGGTGGACGGAGTGAAGACTTGGTTGTGCATATTGGTGGATTTGAATCGGTTTCAATCGTCGATCGTATCCGACCTAATCGAGCACGCCTCATAGAAGTCTGGGTGGAGAGATCTGAGTCTGGGGTCTTGAAATGCTTATTGGGTCGGCTGTTGTTTGCAGGGAAGGTGGTTGGGATGATGATTGATCGGTGGCCGGCGTTTGGTTCTGGCGGCTTGGTGTGTCGATCGGAGTCCCATGGAAAGTTCTCAGTTCAAACCAAGTTGTTGCTGGGGTCAAAGGTTGGTGACCGGGAATGCTTCCGAACTCCTCTGACGGCGACGGCGGCTGGACATGAATCAAGGGCAAGGCGGATCTGGTTTCAGACATGTGTCTTGGGCCGGATCTTGATTCAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

167

Amino Acids

18.05

Weight (kDa)

10.72

Isoelectric Point (pI)

63.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	7
AccI	GTMKAC	1 cut(s)	73
AciI	CCGC	3 cut(s)	312, 425, 451
AclWI	GGATC	2 cut(s)	461, 491
AcoI	YGGCCR	1 cut(s)	293
AfiI	CCNNNNNNNGG	1 cut(s)	302
AflIII	ACRYGT	1 cut(s)	467
AgsI	TTSAA	4 cut(s)	146, 156, 232, 356
AjiI	CACGTC	2 cut(s)	62, 71
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
Alw21I	GWGCWC	2 cut(s)	27, 187
Alw26I	GTCTC	1 cut(s)	46
AlwI	GGATC	2 cut(s)	461, 491
AoxI	GGCC	2 cut(s)	293, 478
AspS9I	GGNCC	1 cut(s)	478
AsuC2I	CCSGG	1 cut(s)	392
AsuHPI	GGTGA	1 cut(s)	398
BanI	GGYRCC	1 cut(s)	7
BbsI	GAAGAC	1 cut(s)	123
Bbv12I	GWGCWC	2 cut(s)	27, 187
BceAI	ACGGC	2 cut(s)	432, 438
BcgI	CGANNNNNNTGC	1 cut(s)	31
BciVI	GTATCC	1 cut(s)	179
BcnI	CCSGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	46
BfuI	GTATCC	1 cut(s)	179
BglII	AGATCT	1 cut(s)	212
BisI	GCNGC	2 cut(s)	313, 426
BlsI	GCNGC	2 cut(s)	314, 427
Bme1390I	CCNGG	1 cut(s)	392
BmgBI	CACGTC	2 cut(s)	62, 71
BmgT120I	GGNCC	1 cut(s)	478
BmiI	GGNNCC	1 cut(s)	9
BmrFI	CCNGG	1 cut(s)	392
BoxI	GACNNNNGTC	1 cut(s)	470
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	174, 206
BpuMI	CCSGG	1 cut(s)	392
BsaBI	GATNNNNATC	1 cut(s)	145
BsaI	GGTCTC	1 cut(s)	46
BsaJI	CCNNGG	2 cut(s)	15, 337
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse118I	RCCGGY	3 cut(s)	4, 76, 295
Bse8I	GATNNNNATC	1 cut(s)	145
BseDI	CCNNGG	2 cut(s)	15, 337
BseGI	GGATG	1 cut(s)	282
BseJI	GATNNNNATC	1 cut(s)	145
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMII	CTCAG	2 cut(s)	207, 363
BseRI	GAGGAG	1 cut(s)	399
BseYI	CCCAGC	1 cut(s)	370
Bsh1285I	CGRYCG	3 cut(s)	77, 166, 329
BshFI	GGCC	2 cut(s)	295, 480
BshNI	GGYRCC	1 cut(s)	7
BsiEI	CGRYCG	3 cut(s)	77, 166, 329
BsiHKAI	GWGCWC	2 cut(s)	27, 187
BsiSI	CCGG	5 cut(s)	5, 77, 296, 391, 481
BslFI	GGGAC	1 cut(s)	319
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	319
BsmI	GAATGC	1 cut(s)	401
BsnI	GGCC	2 cut(s)	295, 480
Bso31I	GGTCTC	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	27, 187
Bsp143I	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
Bsp19I	CCATGG	1 cut(s)	337
BspACI	CCGC	3 cut(s)	312, 425, 451
BspANI	GGCC	2 cut(s)	295, 480
BspCNI	CTCAG	2 cut(s)	208, 362
BspLI	GGNNCC	1 cut(s)	9
BspPI	GGATC	2 cut(s)	461, 491
BspT107I	GGYRCC	1 cut(s)	7
BspTNI	GGTCTC	1 cut(s)	46
BsrFI	RCCGGY	3 cut(s)	4, 76, 295
BssAI	RCCGGY	3 cut(s)	4, 76, 295
BssECI	CCNNGG	2 cut(s)	15, 337
BssMI	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
BssT1I	CCWWGG	1 cut(s)	337
Bst4CI	ACNGT	1 cut(s)	12
BstC8I	GCNNGC	3 cut(s)	6, 187, 297
BstDEI	CTNAG	3 cut(s)	216, 349, 498
BstDSI	CCRYGG	1 cut(s)	337
BstEII	GGTNACC	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	6 cut(s)	166, 215, 289, 329, 456, 486
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
BstMCI	CGRYCG	3 cut(s)	77, 166, 329
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	471
BstPAI	GACNNNNGTC	1 cut(s)	470
BstPI	GGTNACC	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	390
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	3 cut(s)	212, 453, 483
BstYI	RGATCY	3 cut(s)	212, 453, 483
BsuI	GTATCC	1 cut(s)	179
BsuRI	GGCC	2 cut(s)	295, 480
BtgI	CCRYGG	1 cut(s)	337
BtrI	CACGTC	2 cut(s)	62, 71
BtsCI	GGATG	1 cut(s)	282
Cac8I	GCNNGC	3 cut(s)	6, 187, 297
Cfr10I	RCCGGY	3 cut(s)	4, 76, 295
Cfr13I	GGNCC	1 cut(s)	478
CviAII	CATG	4 cut(s)	37, 338, 434, 468
CviJI	RGCY	6 cut(s)	250, 295, 315, 428, 480, 497
CviKI_1	RGCY	6 cut(s)	250, 295, 315, 428, 480, 497
DdeI	CTNAG	3 cut(s)	216, 349, 498
DpnI	GATC	6 cut(s)	165, 214, 288, 328, 455, 485
DpnII	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
EaeI	YGGCCR	1 cut(s)	293
EciI	GGCGGA	1 cut(s)	466
Eco130I	CCWWGG	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	386
EcoO65I	GGTNACC	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	337
FaeI	CATG	4 cut(s)	40, 341, 437, 471
FaiI	YATR	6 cut(s)	38, 132, 194, 339, 435, 469
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	4 cut(s)	36, 337, 433, 467
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	2 cut(s)	313, 426
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	2 cut(s)	313, 426
GluI	GCNGC	2 cut(s)	313, 426
GsaI	CCCAGC	1 cut(s)	374
HaeIII	GGCC	2 cut(s)	295, 480
HapII	CCGG	5 cut(s)	5, 77, 296, 391, 481
Hin1II	CATG	4 cut(s)	40, 341, 437, 471
HincII	GTYRAC	1 cut(s)	74
HindII	GTYRAC	1 cut(s)	74
HinfI	GANTC	5 cut(s)	146, 218, 332, 437, 490
HpaII	CCGG	5 cut(s)	5, 77, 296, 391, 481
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	74, 107
Hpy188I	TCNGA	6 cut(s)	173, 217, 331, 404, 414, 465
Hpy188III	TCNNGA	2 cut(s)	229, 487
Hpy8I	GTNNAC	2 cut(s)	74, 107
Hpy99I	CGWCG	3 cut(s)	75, 164, 424
HpyAV	CCTTC	1 cut(s)	259
HpyCH4III	ACNGT	1 cut(s)	12
HpyCH4IV	ACGT	2 cut(s)	61, 70
HpyCH4V	TGCA	3 cut(s)	36, 130, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	216, 349, 498
HpySE526I	ACGT	2 cut(s)	61, 70
Hsp92II	CATG	4 cut(s)	40, 341, 437, 471
KroI	GCCGGC	2 cut(s)	4, 295
KroNI	GCCGGC	2 cut(s)	6, 297
Kzo9I	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
LmnI	GCTCC	1 cut(s)	30
MaeII	ACGT	2 cut(s)	61, 70
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	6 cut(s)	165, 214, 288, 328, 455, 485
MboI	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	3 cut(s)	212, 453, 483
MhlI	GDGCHC	2 cut(s)	27, 187
MlyI	GAGTC	2 cut(s)	227, 341
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	25, 63, 200, 420
MroNI	GCCGGC	2 cut(s)	4, 295
MslI	CAYNNNNRTG	1 cut(s)	135
MspI	CCGG	5 cut(s)	5, 77, 296, 391, 481
MspR9I	CCNGG	1 cut(s)	392
Mva1269I	GAATGC	1 cut(s)	401
MwoI	GCNNNNNNNGC	1 cut(s)	425
NaeI	GCCGGC	2 cut(s)	6, 297
NciI	CCSGG	1 cut(s)	392
NcoI	CCATGG	1 cut(s)	337
NdeII	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
NgoMIV	GCCGGC	2 cut(s)	4, 295
NlaIII	CATG	4 cut(s)	40, 341, 437, 471
NlaIV	GGNNCC	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	386
NspI	RCATGY	1 cut(s)	471
PciI	ACATGT	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	1 cut(s)	67
PctI	GAATGC	1 cut(s)	401
PdiI	GCCGGC	2 cut(s)	6, 297
PfeI	GAWTC	3 cut(s)	146, 437, 490
PkrI	GCNGC	2 cut(s)	314, 427
Ple19I	CGATCG	2 cut(s)	166, 329
PleI	GAGTC	2 cut(s)	226, 340
PpsI	GAGTC	2 cut(s)	226, 340
PscI	ACATGT	1 cut(s)	467
PshAI	GACNNNNGTC	1 cut(s)	470
PspEI	GGTNACC	1 cut(s)	386
PspFI	CCCAGC	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	9
PspPI	GGNCC	1 cut(s)	478
PsuI	RGATCY	3 cut(s)	212, 453, 483
PvuI	CGATCG	2 cut(s)	166, 329
RseI	CAYNNNNRTG	1 cut(s)	135
SalI	GTCGAC	1 cut(s)	72
SatI	GCNGC	2 cut(s)	313, 426
Sau3AI	GATC	6 cut(s)	163, 212, 286, 326, 453, 483
Sau96I	GGNCC	1 cut(s)	478
SchI	GAGTC	2 cut(s)	227, 341
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	27, 187
SetI	ASST	5 cut(s)	64, 73, 178, 270, 384
SmiMI	CAYNNNNRTG	1 cut(s)	135
SsiI	CCGC	3 cut(s)	312, 425, 451
StyD4I	CCNGG	1 cut(s)	390
StyI	CCWWGG	1 cut(s)	337
TaaI	ACNGT	1 cut(s)	12
TaiI	ACGT	2 cut(s)	64, 73
TaqI	TCGA	4 cut(s)	73, 162, 181, 325
TauI	GCSGC	2 cut(s)	315, 428
TfiI	GAWTC	3 cut(s)	146, 437, 490
TseFI	GTSAC	1 cut(s)	386
Tsp45I	GTSAC	1 cut(s)	386
TspDTI	ATGAA	1 cut(s)	450
TspGWI	ACGGA	1 cut(s)	124
XceI	RCATGY	1 cut(s)	471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367
XmiI	GTMKAC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.