Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

77889899 .. 77892273

Gene Structure 2375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00056130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTCGACACTCTTGGCTGGCTTCGATCTTTTGATGGAAGATTGCCCTCTGTTCTTTCTCGGATTGACTTTTGTCAATTTGTGAGTTGGATATGCATGGGTAGTCATACCATCAACTACAACATTCACTACACGGCAGCAATCCATAGTGTTTACCGTGGTCCACGCCCAGCCAAGGTGGGAATGAAACTGCCCTCAAAATTGTGTGATGATGATAAGTGGAGAGGGCTTGTTGTATGTGCTGCTTTCGAAGGTTTTAATGACCGGTCGAACTACATCCCGGTGCAGAACTCGCACTTGAGATCCGAGGACGACTATTGCTTGAACACTATGTGTTTGGCTCCAATTTTGTTGCAACTGGTCAACAGTCTCTTTTCTTGCGCGGGCGTGCCGGCACCGTCGGGTGCGGTCGTCGGGGGTGTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 NB-ARC TIR

Protein Analysis

142

Amino Acids

15.7

Weight (kDa)

7.6

Isoelectric Point (pI)

55.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	394
AccII	CGCG	1 cut(s)	383
AciI	CCGC	2 cut(s)	383, 407
AclWI	GGATC	1 cut(s)	297
AdeI	CACNNNGTG	1 cut(s)	333
AfiI	CCNNNNNNNGG	1 cut(s)	175
AgeI	ACCGGT	1 cut(s)	264
AgsI	TTSAA	1 cut(s)	325
Alw26I	GTCTC	1 cut(s)	374
AlwI	GGATC	1 cut(s)	297
ApeKI	GCWGC	2 cut(s)	137, 242
AsiGI	ACCGGT	1 cut(s)	264
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	1 cut(s)	281
AsuII	TTCGAA	1 cut(s)	249
AvaII	GGWCC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	149, 229
BccI	CCATC	2 cut(s)	29, 119
BceAI	ACGGC	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	281
BcoDI	GTCTC	1 cut(s)	374
BisI	GCNGC	2 cut(s)	138, 243
BlsI	GCNGC	2 cut(s)	139, 244
Bme1390I	CCNGG	1 cut(s)	281
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	2 cut(s)	342, 396
BmrFI	CCNGG	1 cut(s)	281
BoxI	GACNNNNGTC	1 cut(s)	72
Bpu14I	TTCGAA	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	281
BsaJI	CCNNGG	3 cut(s)	157, 174, 306
BsaWI	WCCGGW	1 cut(s)	264
Bsc4I	CCNNNNNNNGG	1 cut(s)	175
Bse118I	RCCGGY	2 cut(s)	264, 391
Bse1I	ACTGG	1 cut(s)	363
BseDI	CCNNGG	3 cut(s)	157, 174, 306
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	175
BseNI	ACTGG	1 cut(s)	363
BseXI	GCAGC	2 cut(s)	149, 229
BseYI	CCCAGC	1 cut(s)	169
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	383
Bsh1285I	CGRYCG	2 cut(s)	269, 411
BshNI	GGYRCC	1 cut(s)	394
BshTI	ACCGGT	1 cut(s)	264
BsiEI	CGRYCG	2 cut(s)	269, 411
BsiSI	CCGG	3 cut(s)	265, 281, 392
BslFI	GGGAC	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	175
BsmAI	GTCTC	1 cut(s)	374
BsmFI	GGGAC	1 cut(s)	407
Bsp119I	TTCGAA	1 cut(s)	249
Bsp143I	GATC	2 cut(s)	26, 302
BspACI	CCGC	2 cut(s)	383, 407
BspFNI	CGCG	1 cut(s)	383
BspLI	GGNNCC	2 cut(s)	342, 396
BspPI	GGATC	1 cut(s)	297
BspT104I	TTCGAA	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	394
BsrFI	RCCGGY	2 cut(s)	264, 391
BsrI	ACTGG	1 cut(s)	363
BssAI	RCCGGY	2 cut(s)	264, 391
BssECI	CCNNGG	3 cut(s)	157, 174, 306
BssMI	GATC	2 cut(s)	26, 302
BssT1I	CCWWGG	1 cut(s)	174
Bst4CI	ACNGT	3 cut(s)	158, 368, 399
BstBI	TTCGAA	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	20, 385, 389, 393
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	1 cut(s)	276
BstFNI	CGCG	1 cut(s)	383
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	2 cut(s)	29, 305
BstMAI	GTCTC	1 cut(s)	374
BstMBI	GATC	2 cut(s)	26, 302
BstMCI	CGRYCG	2 cut(s)	269, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	292
BstPAI	GACNNNNGTC	1 cut(s)	72
BstSCI	CCNGG	1 cut(s)	279
BstUI	CGCG	1 cut(s)	383
BstV1I	GCAGC	2 cut(s)	149, 229
BstX2I	RGATCY	1 cut(s)	302
BstYI	RGATCY	1 cut(s)	302
BtgI	CCRYGG	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	276
Cac8I	GCNNGC	4 cut(s)	20, 385, 389, 393
CfoI	GCGC	1 cut(s)	383
Cfr10I	RCCGGY	2 cut(s)	264, 391
Cfr13I	GGNCC	1 cut(s)	161
CspAI	ACCGGT	1 cut(s)	264
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	5 cut(s)	18, 22, 173, 229, 341
CviKI_1	RGCY	5 cut(s)	18, 22, 173, 229, 341
DpnI	GATC	2 cut(s)	28, 304
DpnII	GATC	2 cut(s)	26, 302
DraIII	CACNNNGTG	1 cut(s)	333
Eco130I	CCWWGG	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	161
EcoT14I	CCWWGG	1 cut(s)	174
EcoT22I	ATGCAT	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	174
FaeI	CATG	1 cut(s)	100
FaiI	YATR	6 cut(s)	94, 98, 108, 147, 238, 332
FaqI	GGGAC	1 cut(s)	407
FatI	CATG	1 cut(s)	96
FauI	CCCGC	1 cut(s)	376
Fnu4HI	GCNGC	2 cut(s)	138, 243
FokI	GGATG	1 cut(s)	263
Fsp4HI	GCNGC	2 cut(s)	138, 243
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	2 cut(s)	138, 243
GsaI	CCCAGC	1 cut(s)	173
HapII	CCGG	3 cut(s)	265, 281, 392
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	364
HindII	GTYRAC	1 cut(s)	364
HpaII	CCGG	3 cut(s)	265, 281, 392
Hpy166II	GTNNAC	3 cut(s)	154, 164, 364
Hpy188I	TCNGA	2 cut(s)	63, 307
Hpy8I	GTNNAC	3 cut(s)	154, 164, 364
Hpy99I	CGWCG	2 cut(s)	403, 416
HpyAV	CCTTC	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	158, 368, 399
HpyCH4V	TGCA	3 cut(s)	96, 286, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	100
HspAI	GCGC	1 cut(s)	381
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	2 cut(s)	26, 302
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	6 cut(s)	4, 183, 278, 294, 344, 405
Lsp1109I	GCAGC	2 cut(s)	149, 229
MalI	GATC	2 cut(s)	28, 304
MboI	GATC	2 cut(s)	26, 302
MboII	GAAGA	1 cut(s)	51
MflI	RGATCY	1 cut(s)	302
MluCI	AATT	3 cut(s)	77, 200, 345
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	4 cut(s)	58, 205, 218, 301
Mph1103I	ATGCAT	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	1 cut(s)	258
MslI	CAYNNNNRTG	1 cut(s)	281
MspI	CCGG	3 cut(s)	265, 281, 392
MspR9I	CCNGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	383
MwoI	GCNNNNNNNGC	1 cut(s)	292
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	281
NdeII	GATC	2 cut(s)	26, 302
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	342, 396
NsiI	ATGCAT	1 cut(s)	98
NspV	TTCGAA	1 cut(s)	249
PdiI	GCCGGC	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	139, 244
PshAI	GACNNNNGTC	1 cut(s)	72
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	342, 396
PspPI	GGNCC	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	281
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	138, 243
Sau3AI	GATC	2 cut(s)	26, 302
Sau96I	GGNCC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	281
SetI	ASST	2 cut(s)	180, 256
SfuI	TTCGAA	1 cut(s)	249
SinI	GGWCC	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	298
SmoI	CTYRAG	1 cut(s)	298
Sse9I	AATT	3 cut(s)	77, 200, 345
SsiI	CCGC	2 cut(s)	383, 407
StyD4I	CCNGG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	174
TaaI	ACNGT	3 cut(s)	158, 368, 399
TaqI	TCGA	4 cut(s)	6, 25, 249, 269
TasI	AATT	3 cut(s)	77, 200, 345
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TseI	GCWGC	2 cut(s)	137, 242
TspDTI	ATGAA	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	161
Zsp2I	ATGCAT	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.