Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000245.1

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

45242 .. 46910

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000245.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

atggagatacttctaggcttcggcctctgtgtgttggctcttgctgttttcgatggaagagtgttgtttgaggagagttttggcgttggtgtggtcatgccggcgagccaaaggaattttggattgacgaaggaaggcggcggtggttgtcggcaggagtgggatccgggaagtgggttgcagctgttccctctctctcacggtggtctttgcaggtcgtaccattctggcgctgacggtgcgatgaacaggctgtggtctagggtaggcgaccttgtttgggcagtcggcgatcttcgagctctgtgtgatgaggtagaggacggacctttgtttggaggtatggcggagacggataccgggtgtgtcgtcggcggtcaggtcgattgcccagatgctttgggaatagggcgaagacctagtgggttctgggctcaagagtttgtggacatgggccgaatcagccataggtggacaagtggatttgggtttccacagtttctgatccagatctgggatccgggtggtttttgcaactggattcggatctgggatccgggtggacgttggagttggactgcgacccatgtttttatgtgggcagtttgtttgcaagaatgggttggggttcctgtgctttattggtattggatccaggacccaattctatggtatttgttcgtgaaagatcgtctgccaacatggccatgttttgacacccttggccggcttcgatctttaggtgggagagtgccttcattccgacgccaagttgatttttgtcaatttgtgcgttggagttcgatggactctgaaaaatacaaagaaatgaaagcagcaggaaagaaaatgctcaaacattgtgcaggtttgccattagccatcacagtgaatgcaggaattctagtgagaaagaagacagttggtgagtgggatgcggtgtatatgaatgtttacacaaacataaggagtggcatagctgaagaaggagaatatgcaggtgcatcatggttgctgagtggcagatctagatctgaaaatggggagcggggagataagaacctagagagttcaagtgtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0002230 GO:0002238 GO:0002239 GO:0002252 GO:0002376 GO:0002682 GO:0002697 GO:0002831 GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0008150 GO:0008219 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009620 GO:0009626 GO:0009628 GO:0009637 GO:0009642 GO:0009646 GO:0009719 GO:0009725 GO:0009751 GO:0009987 GO:0010033 GO:0012501 GO:0014070 GO:0016020 GO:0023052 GO:0030054 GO:0031347 GO:0032101 GO:0032870 GO:0033554 GO:0034050 GO:0035690 GO:0036094 GO:0042221 GO:0042493 GO:0043207 GO:0043900 GO:0044464 GO:0045087 GO:0046677 GO:0048583 GO:0050688 GO:0050691 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071407 GO:0071446 GO:0071495 GO:0071944 GO:0080134 GO:0097159 GO:0098542 GO:1901265 GO:1901363 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC

Protein Analysis

360

Amino Acids

40.15

Weight (kDa)

6.02

Isoelectric Point (pI)

43.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	989
Acc36I	ACCTGC	3 cut(s)	204, 857, 989
AccBSI	CCGCTC	1 cut(s)	1048
AciI	CCGC	6 cut(s)	138, 141, 347, 375, 938, 1048
AcoI	YGGCCR	2 cut(s)	704, 724
AcsI	RAATTY	2 cut(s)	115, 900
AcuI	CTGAAG	1 cut(s)	1002
AcyI	GRCGYC	1 cut(s)	766
AfaI	GTAC	1 cut(s)	221
AfiI	CCNNNNNNNGG	5 cut(s)	173, 280, 335, 514, 726
AgsI	TTSAA	1 cut(s)	1074
AjnI	CCWGG	1 cut(s)	654
AluBI	AGCT	3 cut(s)	184, 302, 980
AluI	AGCT	3 cut(s)	184, 302, 980
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	502
AoxI	GGCC	4 cut(s)	22, 454, 704, 724
ApeKI	GCWGC	2 cut(s)	181, 836
ApoI	RAATTY	2 cut(s)	115, 900
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	3 cut(s)	326, 454, 658
AsuC2I	CCSGG	4 cut(s)	168, 361, 522, 558
AsuHPI	GGTGA	1 cut(s)	938
AvaII	GGWCC	2 cut(s)	326, 658
BalI	TGGCCA	1 cut(s)	706
BamHI	GGATCC	4 cut(s)	163, 517, 553, 651
BanII	GRGCYC	2 cut(s)	304, 436
BbsI	GAAGAC	2 cut(s)	421, 923
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	2 cut(s)	193, 848
BccI	CCATC	3 cut(s)	47, 799, 890
BciT130I	CCWGG	1 cut(s)	656
BciVI	GTATCC	1 cut(s)	349
BcnI	CCSGG	4 cut(s)	168, 361, 522, 558
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	6 cut(s)	14, 261, 420, 905, 1029, 1064
BfoI	RGCGCY	1 cut(s)	234
BfuAI	ACCTGC	3 cut(s)	204, 857, 989
BfuI	GTATCC	1 cut(s)	349
BglI	GCCNNNNNGGC	1 cut(s)	703
BglII	AGATCT	3 cut(s)	510, 1025, 1031
BisI	GCNGC	3 cut(s)	139, 182, 837
BlsI	GCNGC	3 cut(s)	140, 183, 838
Bme1390I	CCNGG	5 cut(s)	168, 361, 522, 558, 656
Bme18I	GGWCC	2 cut(s)	326, 658
BmgT120I	GGNCC	3 cut(s)	326, 454, 658
BmiI	GGNNCC	6 cut(s)	165, 519, 555, 630, 653, 660
BmrFI	CCNGG	5 cut(s)	168, 361, 522, 558, 656
BmsI	GCATC	3 cut(s)	385, 925, 1013
BpiI	GAAGAC	2 cut(s)	421, 923
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	4 cut(s)	168, 361, 522, 558
BsaBI	GATNNNNATC	3 cut(s)	509, 545, 1030
BsaHI	GRCGYC	1 cut(s)	766
BsaJI	CCNNGG	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	5 cut(s)	173, 280, 335, 514, 726
Bse118I	RCCGGY	2 cut(s)	100, 726
Bse1I	ACTGG	1 cut(s)	542
Bse8I	GATNNNNATC	3 cut(s)	509, 545, 1030
BseBI	CCWGG	1 cut(s)	656
BseDI	CCNNGG	1 cut(s)	721
BseGI	GGATG	1 cut(s)	940
BseJI	GATNNNNATC	3 cut(s)	509, 545, 1030
BseLI	CCNNNNNNNGG	5 cut(s)	173, 280, 335, 514, 726
BseMII	CTCAG	1 cut(s)	1007
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	193, 848
BsgI	GTGCAG	1 cut(s)	885
BshFI	GGCC	4 cut(s)	24, 456, 706, 726
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	6 cut(s)	101, 167, 360, 521, 557, 727
BslI	CCNNNNNNNGG	5 cut(s)	173, 280, 335, 514, 726
BsmAI	GTCTC	1 cut(s)	344
BsmBI	CGTCTC	1 cut(s)	344
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	4 cut(s)	24, 456, 706, 726
Bsp1286I	GDGCHC	2 cut(s)	304, 436
BspACI	CCGC	6 cut(s)	138, 141, 347, 375, 938, 1048
BspANI	GGCC	4 cut(s)	24, 456, 706, 726
BspCNI	CTCAG	1 cut(s)	1008
BspLI	GGNNCC	6 cut(s)	165, 519, 555, 630, 653, 660
BspMI	ACCTGC	3 cut(s)	204, 857, 989
BsrBI	CCGCTC	1 cut(s)	1048
BsrFI	RCCGGY	2 cut(s)	100, 726
BsrI	ACTGG	1 cut(s)	542
BssAI	RCCGGY	2 cut(s)	100, 726
BssECI	CCNNGG	1 cut(s)	721
BssNI	GRCGYC	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	721
Bst2UI	CCWGG	1 cut(s)	656
Bst4CI	ACNGT	5 cut(s)	203, 239, 498, 889, 922
Bst6I	CTCTTC	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	766
BstC8I	GCNNGC	3 cut(s)	102, 106, 728
BstDEI	CTNAG	1 cut(s)	1016
BstF5I	GGATG	1 cut(s)	940
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	344
BstMWI	GCNNNNNNNGC	3 cut(s)	239, 462, 703
BstNI	CCWGG	1 cut(s)	656
BstSCI	CCNGG	5 cut(s)	166, 359, 520, 556, 654
BstV1I	GCAGC	2 cut(s)	193, 848
BstV2I	GAAGAC	2 cut(s)	421, 923
BstX2I	RGATCY	8 cut(s)	163, 510, 517, 546, 553, 651, 1025, 1031
BstXI	CCANNNNNNTGG	1 cut(s)	669
BstYI	RGATCY	8 cut(s)	163, 510, 517, 546, 553, 651, 1025, 1031
BsuI	GTATCC	1 cut(s)	349
BsuRI	GGCC	4 cut(s)	24, 456, 706, 726
BtgZI	GCGATG	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	940
BtsIMutI	CAGTG	1 cut(s)	894
BveI	ACCTGC	3 cut(s)	204, 857, 989
Cac8I	GCNNGC	3 cut(s)	102, 106, 728
CaiI	CAGNNNCTG	1 cut(s)	502
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	2 cut(s)	100, 726
Cfr13I	GGNCC	3 cut(s)	326, 454, 658
CseI	GACGC	1 cut(s)	774
Csp6I	GTAC	1 cut(s)	220
CviAII	CATG	6 cut(s)	97, 451, 587, 702, 708, 1008
CviQI	GTAC	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	1016
EaeI	YGGCCR	2 cut(s)	704, 724
Eam1104I	CTCTTC	1 cut(s)	52
EarI	CTCTTC	1 cut(s)	52
EciI	GGCGGA	1 cut(s)	362
Ecl136II	GAGCTC	1 cut(s)	302
Eco130I	CCWWGG	1 cut(s)	721
Eco24I	GRGCYC	2 cut(s)	304, 436
Eco47I	GGWCC	2 cut(s)	326, 658
Eco53kI	GAGCTC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	1002
EcoICRI	GAGCTC	1 cut(s)	302
EcoO109I	RGGNCCY	1 cut(s)	658
EcoRI	GAATTC	1 cut(s)	900
EcoRII	CCWGG	1 cut(s)	654
EcoT14I	CCWWGG	1 cut(s)	721
EcoT38I	GRGCYC	2 cut(s)	304, 436
ErhI	CCWWGG	1 cut(s)	721
Esp3I	CGTCTC	1 cut(s)	344
FaeI	CATG	6 cut(s)	100, 454, 590, 705, 711, 1011
FatI	CATG	6 cut(s)	96, 450, 586, 701, 707, 1007
FauI	CCCGC	1 cut(s)	1041
Fnu4HI	GCNGC	3 cut(s)	139, 182, 837
FokI	GGATG	1 cut(s)	947
FriOI	GRGCYC	2 cut(s)	304, 436
Fsp4HI	GCNGC	3 cut(s)	139, 182, 837
FspBI	CTAG	6 cut(s)	14, 261, 420, 905, 1029, 1064
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	3 cut(s)	139, 182, 837
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	4 cut(s)	24, 456, 706, 726
HapII	CCGG	6 cut(s)	101, 167, 360, 521, 557, 727
HgaI	GACGC	1 cut(s)	774
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	766
Hin1II	CATG	6 cut(s)	100, 454, 590, 705, 711, 1011
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	3 cut(s)	459, 541, 809
HpaII	CCGG	6 cut(s)	101, 167, 360, 521, 557, 727
HphI	GGTGA	1 cut(s)	938
Hpy166II	GTNNAC	4 cut(s)	448, 474, 563, 955
Hpy188I	TCNGA	5 cut(s)	504, 546, 764, 814, 1036
Hpy188III	TCNNGA	4 cut(s)	437, 508, 682, 1029
Hpy8I	GTNNAC	4 cut(s)	448, 474, 563, 955
Hpy99I	CGWCG	2 cut(s)	374, 768
HpyAV	CCTTC	4 cut(s)	124, 128, 765, 980
HpyCH4III	ACNGT	5 cut(s)	203, 239, 498, 889, 922
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	8 cut(s)	181, 213, 534, 613, 866, 896, 998, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	239, 462, 703
HpyF3I	CTNAG	1 cut(s)	1016
HpySE526I	ACGT	1 cut(s)	565
Hsp92I	GRCGYC	1 cut(s)	766
Hsp92II	CATG	6 cut(s)	100, 454, 590, 705, 711, 1011
HspAI	GCGC	1 cut(s)	231
KroI	GCCGGC	2 cut(s)	100, 726
KroNI	GCCGGC	2 cut(s)	102, 728
LmnI	GCTCC	1 cut(s)	1045
Lsp1109I	GCAGC	2 cut(s)	193, 848
LweI	GCATC	3 cut(s)	385, 925, 1013
MaeI	CTAG	6 cut(s)	14, 261, 420, 905, 1029, 1064
MaeII	ACGT	1 cut(s)	565
MbiI	CCGCTC	1 cut(s)	1048
MboII	GAAGA	5 cut(s)	69, 287, 426, 928, 995
MflI	RGATCY	8 cut(s)	163, 510, 517, 546, 553, 651, 1025, 1031
MhlI	GDGCHC	2 cut(s)	304, 436
MlsI	TGGCCA	1 cut(s)	706
MluCI	AATT	4 cut(s)	115, 663, 785, 900
MluNI	TGGCCA	1 cut(s)	706
MlyI	GAGTC	1 cut(s)	803
MmeI	TCCRAC	4 cut(s)	548, 554, 776, 787
MnlI	CCTC	6 cut(s)	35, 64, 201, 307, 313, 332
Mox20I	TGGCCA	1 cut(s)	706
MroNI	GCCGGC	2 cut(s)	100, 726
MscI	TGGCCA	1 cut(s)	706
MseI	TTAA	1 cut(s)	1081
MslI	CAYNNNNRTG	2 cut(s)	706, 887
Msp20I	TGGCCA	1 cut(s)	706
MspA1I	CMGCKG	1 cut(s)	184
MspI	CCGG	6 cut(s)	101, 167, 360, 521, 557, 727
MspR9I	CCNGG	5 cut(s)	168, 361, 522, 558, 656
Mva1269I	GAATGC	1 cut(s)	898
MvaI	CCWGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	3 cut(s)	239, 462, 703
NaeI	GCCGGC	2 cut(s)	102, 728
NciI	CCSGG	4 cut(s)	168, 361, 522, 558
NgoMIV	GCCGGC	2 cut(s)	100, 726
NlaIII	CATG	6 cut(s)	100, 454, 590, 705, 711, 1011
NlaIV	GGNNCC	6 cut(s)	165, 519, 555, 630, 653, 660
PaqCI	CACCTGC	1 cut(s)	989
PctI	GAATGC	1 cut(s)	898
PdiI	GCCGGC	2 cut(s)	102, 728
PfeI	GAWTC	2 cut(s)	459, 541
PfoI	TCCNGGA	2 cut(s)	166, 654
PkrI	GCNGC	3 cut(s)	140, 183, 838
PleI	GAGTC	1 cut(s)	803
PpsI	GAGTC	1 cut(s)	803
PpuMI	RGGWCCY	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	658
Psp6I	CCWGG	1 cut(s)	654
PspGI	CCWGG	1 cut(s)	654
PspN4I	GGNNCC	6 cut(s)	165, 519, 555, 630, 653, 660
PspPI	GGNCC	3 cut(s)	326, 454, 658
PspPPI	RGGWCCY	1 cut(s)	658
PstNI	CAGNNNCTG	1 cut(s)	502
PsuI	RGATCY	8 cut(s)	163, 510, 517, 546, 553, 651, 1025, 1031
PvuII	CAGCTG	1 cut(s)	184
RsaI	GTAC	1 cut(s)	221
RsaNI	GTAC	1 cut(s)	220
RseI	CAYNNNNRTG	2 cut(s)	706, 887
SacI	GAGCTC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	1081
SatI	GCNGC	3 cut(s)	139, 182, 837
Sau96I	GGNCC	3 cut(s)	326, 454, 658
SchI	GAGTC	1 cut(s)	803
ScrFI	CCNGG	5 cut(s)	168, 361, 522, 558, 656
SduI	GDGCHC	2 cut(s)	304, 436
SfaNI	GCATC	3 cut(s)	385, 925, 1013
SinI	GGWCC	2 cut(s)	326, 658
SmiMI	CAYNNNNRTG	2 cut(s)	706, 887
SmlI	CTYRAG	1 cut(s)	435
SmoI	CTYRAG	1 cut(s)	435
Sse9I	AATT	4 cut(s)	115, 663, 785, 900
SsiI	CCGC	6 cut(s)	138, 141, 347, 375, 938, 1048
SspMI	CTAG	6 cut(s)	14, 261, 420, 905, 1029, 1064
SstI	GAGCTC	1 cut(s)	304
StyD4I	CCNGG	5 cut(s)	166, 359, 520, 556, 654
StyI	CCWWGG	1 cut(s)	721
TaaI	ACNGT	5 cut(s)	203, 239, 498, 889, 922
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	5 cut(s)	51, 298, 384, 733, 803
TasI	AATT	4 cut(s)	115, 663, 785, 900
TauI	GCSGC	1 cut(s)	141
TfiI	GAWTC	2 cut(s)	459, 541
Tru1I	TTAA	1 cut(s)	1081
Tru9I	TTAA	1 cut(s)	1081
TscAI	CASTG	1 cut(s)	894
TseI	GCWGC	2 cut(s)	181, 836
TspDTI	ATGAA	4 cut(s)	260, 747, 845, 962
TspGWI	ACGGA	2 cut(s)	339, 368
TspRI	CASTG	1 cut(s)	894
VpaK11BI	GGWCC	2 cut(s)	326, 658
XapI	RAATTY	2 cut(s)	115, 900
XbaI	TCTAGA	1 cut(s)	1028
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	6 cut(s)	14, 261, 420, 905, 1029, 1064

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.