Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

26829161 .. 26830032

Gene Structure 872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g24831.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAAAAACCCTATGAGAGCTCTCGTTCTCTCACTACGGCGGCGGCTAACCTTAGGATTTCGCCGTCCAAACCCCTTGACCGGTGACGTTCTCGTTTATGGTTCTCGGCTGACGAGCCTCTTGGCCTCGCGAATCCCTCCATGGCAATCCCCGGAGGACCTGAATCATACTTGGAATCCCGGTTTGGCATTGAGGCAAGAGATCGGTTGTTCGTTGGTGGGGACCCGATTTGATGTGGTGGTTGTTGGTGGCATAGAGGTGTGGGTGTTGTCCCCAAATTCAGAGGTGGTAGTCCATGACGGAGGAAGAAGATGGCATCGCAATGGCTGGTTTCAAGGGTGTGGCAACGCTGGTCTTGGAGTTGTGATCCGGGTCAGATCTGGTTTCGAGCCTGGAGTAGGGTCTGGGTCTGGGATCCAGGTGGGCCTTGTGGGCTATGGATCGGCTGCCATCACGACCATGTCTGGAATCACCTTTGGCCGGCTTCGATTATTTAGGTGGAAGATTACCCACAGCCTAGTGCCGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.21

Weight (kDa)

11.48

Isoelectric Point (pI)

54.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	130
AciI	CCGC	2 cut(s)	40, 43
AclWI	GGATC	4 cut(s)	361, 409, 422, 448
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	277
AfiI	CCNNNNNNNGG	3 cut(s)	80, 398, 480
AgeI	ACCGGT	1 cut(s)	80
AgsI	TTSAA	1 cut(s)	335
AjnI	CCWGG	2 cut(s)	391, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	167, 199
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
Alw21I	GWGCWC	1 cut(s)	22
AlwI	GGATC	4 cut(s)	361, 409, 422, 448
AoxI	GGCC	3 cut(s)	123, 424, 478
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	277
AsiGI	ACCGGT	1 cut(s)	80
AspS9I	GGNCC	3 cut(s)	157, 222, 424
AsuC2I	CCSGG	3 cut(s)	152, 180, 371
AsuHPI	GGTGA	2 cut(s)	95, 463
AvaII	GGWCC	2 cut(s)	157, 222
AxyI	CCTNAGG	1 cut(s)	52
BamHI	GGATCC	1 cut(s)	414
BanII	GRGCYC	1 cut(s)	22
Bbv12I	GWGCWC	1 cut(s)	22
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	2 cut(s)	306, 458
BceAI	ACGGC	2 cut(s)	48, 53
BciT130I	CCWGG	2 cut(s)	393, 419
BcnI	CCSGG	3 cut(s)	152, 180, 371
BfaI	CTAG	1 cut(s)	518
BglI	GCCNNNNNGGC	1 cut(s)	432
BglII	AGATCT	1 cut(s)	377
BisI	GCNGC	3 cut(s)	41, 44, 447
BlsI	GCNGC	3 cut(s)	42, 45, 448
Bme1390I	CCNGG	5 cut(s)	152, 180, 371, 393, 419
Bme18I	GGWCC	2 cut(s)	157, 222
BmgT120I	GGNCC	3 cut(s)	157, 222, 424
BmiI	GGNNCC	3 cut(s)	223, 224, 416
BmrFI	CCNGG	5 cut(s)	152, 180, 371, 393, 419
BmsI	GCATC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	414
BpuMI	CCSGG	3 cut(s)	152, 180, 371
BsaJI	CCNNGG	2 cut(s)	140, 150
BsaWI	WCCGGW	1 cut(s)	80
Bsc4I	CCNNNNNNNGG	3 cut(s)	80, 398, 480
Bse118I	RCCGGY	2 cut(s)	80, 480
Bse21I	CCTNAGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	328
BseBI	CCWGG	2 cut(s)	393, 419
BseDI	CCNNGG	2 cut(s)	140, 150
BseLI	CCNNNNNNNGG	3 cut(s)	80, 398, 480
BseMI	GCAATG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	433
Bsh1236I	CGCG	1 cut(s)	130
BshFI	GGCC	3 cut(s)	125, 426, 480
BshTI	ACCGGT	1 cut(s)	80
BsiHKAI	GWGCWC	1 cut(s)	22
BsiSI	CCGG	5 cut(s)	81, 152, 180, 370, 481
BslFI	GGGAC	2 cut(s)	235, 256
BslI	CCNNNNNNNGG	3 cut(s)	80, 398, 480
BsmFI	GGGAC	2 cut(s)	235, 256
BsnI	GGCC	3 cut(s)	125, 426, 480
Bsp1286I	GDGCHC	1 cut(s)	22
Bsp143I	GATC	5 cut(s)	201, 366, 377, 414, 440
Bsp19I	CCATGG	1 cut(s)	140
Bsp68I	TCGCGA	1 cut(s)	130
BspACI	CCGC	2 cut(s)	40, 43
BspANI	GGCC	3 cut(s)	125, 426, 480
BspFNI	CGCG	1 cut(s)	130
BspLI	GGNNCC	3 cut(s)	223, 224, 416
BspPI	GGATC	4 cut(s)	361, 409, 422, 448
BsrDI	GCAATG	1 cut(s)	328
BsrFI	RCCGGY	2 cut(s)	80, 480
BssAI	RCCGGY	2 cut(s)	80, 480
BssECI	CCNNGG	2 cut(s)	140, 150
BssMI	GATC	5 cut(s)	201, 366, 377, 414, 440
BssT1I	CCWWGG	1 cut(s)	140
Bst2UI	CCWGG	2 cut(s)	393, 419
BstC8I	GCNNGC	1 cut(s)	482
BstDEI	CTNAG	1 cut(s)	52
BstDSI	CCRYGG	1 cut(s)	140
BstENI	CCTNNNNNAGG	1 cut(s)	396
BstFNI	CGCG	1 cut(s)	130
BstKTI	GATC	5 cut(s)	204, 369, 380, 417, 443
BstMBI	GATC	5 cut(s)	201, 366, 377, 414, 440
BstMWI	GCNNNNNNNGC	1 cut(s)	432
BstNI	CCWGG	2 cut(s)	393, 419
BstSCI	CCNGG	5 cut(s)	150, 178, 369, 391, 417
BstUI	CGCG	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	2 cut(s)	377, 414
BstYI	RGATCY	2 cut(s)	377, 414
Bsu36I	CCTNAGG	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	125, 426, 480
BtgI	CCRYGG	1 cut(s)	140
BtgZI	GCGATG	1 cut(s)	302
BtuMI	TCGCGA	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	482
Cfr10I	RCCGGY	2 cut(s)	80, 480
Cfr13I	GGNCC	3 cut(s)	157, 222, 424
CspAI	ACCGGT	1 cut(s)	80
CviAII	CATG	3 cut(s)	141, 296, 460
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	5 cut(s)	203, 368, 379, 416, 442
DpnII	GATC	5 cut(s)	201, 366, 377, 414, 440
EaeI	YGGCCR	1 cut(s)	478
Ecl136II	GAGCTC	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	22
Eco47I	GGWCC	2 cut(s)	157, 222
Eco53kI	GAGCTC	1 cut(s)	20
Eco81I	CCTNAGG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	20
EcoNI	CCTNNNNNAGG	1 cut(s)	396
EcoO109I	RGGNCCY	2 cut(s)	157, 222
EcoRII	CCWGG	2 cut(s)	391, 417
EcoT14I	CCWWGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	3 cut(s)	144, 299, 463
FaiI	YATR	8 cut(s)	14, 99, 142, 168, 254, 297, 438, 461
FaqI	GGGAC	2 cut(s)	235, 256
FatI	CATG	3 cut(s)	140, 295, 459
Fnu4HI	GCNGC	3 cut(s)	41, 44, 447
FriOI	GRGCYC	1 cut(s)	22
Fsp4HI	GCNGC	3 cut(s)	41, 44, 447
FspBI	CTAG	1 cut(s)	518
GluI	GCNGC	3 cut(s)	41, 44, 447
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	3 cut(s)	125, 426, 480
HapII	CCGG	5 cut(s)	81, 152, 180, 370, 481
Hin1II	CATG	3 cut(s)	144, 299, 463
HinfI	GANTC	4 cut(s)	132, 163, 175, 468
HpaII	CCGG	5 cut(s)	81, 152, 180, 370, 481
HphI	GGTGA	2 cut(s)	95, 463
Hpy188I	TCNGA	2 cut(s)	283, 377
Hpy188III	TCNNGA	3 cut(s)	129, 454, 465
HpyCH4IV	ACGT	1 cut(s)	87
HpyF10VI	GCNNNNNNNGC	1 cut(s)	432
HpyF3I	CTNAG	1 cut(s)	52
HpySE526I	ACGT	1 cut(s)	87
Hsp92II	CATG	3 cut(s)	144, 299, 463
KflI	GGGWCCC	1 cut(s)	222
KroI	GCCGGC	1 cut(s)	480
KroNI	GCCGGC	1 cut(s)	482
Kzo9I	GATC	5 cut(s)	201, 366, 377, 414, 440
Lsp1109I	GCAGC	1 cut(s)	433
LweI	GCATC	1 cut(s)	325
MaeI	CTAG	1 cut(s)	518
MaeII	ACGT	1 cut(s)	87
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	5 cut(s)	203, 368, 379, 416, 442
MboI	GATC	5 cut(s)	201, 366, 377, 414, 440
MboII	GAAGA	3 cut(s)	318, 321, 514
MflI	RGATCY	2 cut(s)	377, 414
MhlI	GDGCHC	1 cut(s)	22
MluCI	AATT	1 cut(s)	277
MnlI	CCTC	8 cut(s)	128, 136, 147, 148, 186, 250, 277, 296
MroNI	GCCGGC	1 cut(s)	480
MslI	CAYNNNNRTG	3 cut(s)	257, 321, 458
MspI	CCGG	5 cut(s)	81, 152, 180, 370, 481
MspR9I	CCNGG	5 cut(s)	152, 180, 371, 393, 419
MvaI	CCWGG	2 cut(s)	393, 419
MvnI	CGCG	1 cut(s)	130
MwoI	GCNNNNNNNGC	1 cut(s)	432
NaeI	GCCGGC	1 cut(s)	482
NciI	CCSGG	3 cut(s)	152, 180, 371
NcoI	CCATGG	1 cut(s)	140
NdeII	GATC	5 cut(s)	201, 366, 377, 414, 440
NgoMIV	GCCGGC	1 cut(s)	480
NlaIII	CATG	3 cut(s)	144, 299, 463
NlaIV	GGNNCC	3 cut(s)	223, 224, 416
NmeAIII	GCCGAG	1 cut(s)	85
NmuCI	GTSAC	1 cut(s)	83
NruI	TCGCGA	1 cut(s)	130
PdiI	GCCGGC	1 cut(s)	482
PfeI	GAWTC	4 cut(s)	132, 163, 175, 468
PflFI	GACNNNGTC	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	42, 45, 448
PpuMI	RGGWCCY	2 cut(s)	157, 222
Psp124BI	GAGCTC	1 cut(s)	22
Psp5II	RGGWCCY	2 cut(s)	157, 222
Psp6I	CCWGG	2 cut(s)	391, 417
PspGI	CCWGG	2 cut(s)	391, 417
PspN4I	GGNNCC	3 cut(s)	223, 224, 416
PspPI	GGNCC	3 cut(s)	157, 222, 424
PspPPI	RGGWCCY	2 cut(s)	157, 222
PsuI	RGATCY	2 cut(s)	377, 414
PsyI	GACNNNGTC	1 cut(s)	460
RruI	TCGCGA	1 cut(s)	130
RseI	CAYNNNNRTG	3 cut(s)	257, 321, 458
SacI	GAGCTC	1 cut(s)	22
SatI	GCNGC	3 cut(s)	41, 44, 447
Sau3AI	GATC	5 cut(s)	201, 366, 377, 414, 440
Sau96I	GGNCC	3 cut(s)	157, 222, 424
ScrFI	CCNGG	5 cut(s)	152, 180, 371, 393, 419
SduI	GDGCHC	1 cut(s)	22
SetI	ASST	9 cut(s)	22, 53, 90, 162, 261, 288, 423, 476, 500
SfaNI	GCATC	1 cut(s)	325
SinI	GGWCC	2 cut(s)	157, 222
SmiMI	CAYNNNNRTG	3 cut(s)	257, 321, 458
Sse9I	AATT	1 cut(s)	277
SsiI	CCGC	2 cut(s)	40, 43
SspMI	CTAG	1 cut(s)	518
SstI	GAGCTC	1 cut(s)	22
StyD4I	CCNGG	5 cut(s)	150, 178, 369, 391, 417
StyI	CCWWGG	1 cut(s)	140
TaiI	ACGT	1 cut(s)	90
TaqI	TCGA	2 cut(s)	387, 487
TasI	AATT	1 cut(s)	277
TauI	GCSGC	2 cut(s)	43, 46
TfiI	GAWTC	4 cut(s)	132, 163, 175, 468
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	315
Tth111I	GACNNNGTC	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	157, 222
XagI	CCTNNNNNAGG	1 cut(s)	396
XapI	RAATTY	1 cut(s)	277
XspI	CTAG	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.