Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

9871695 .. 9872535

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGAGAGCTCTCGCTCTCTCACTACGGCGGCGGCTAACCTTAGGGTTTCCCCGCCCAAACACCTTGACTGGCGACGTTCTTGTTTATGGTTCTCAGCTGACCACTCTCTTGGCCTCGCGAATCCCTCCATGGCAATCCCCAGCATTGAGGCAAGAGATCAATCCTTCGTTGGTGGAGACCCGATCTGTTGTTGGCCGGCGGCATAGATGTGTGGGTATTGTCCCCAAATTCAGAGGTGGCAGTCCACGACTGAGGAAGGTACAAGAAGCTCAGATCTATGGAGGGCATGGCAGCGCTAGTTATGGAGTTGTGATCCAGGTCGAATCTGGCTTCGGGTCTGGAGCAGGGTCTGGGTCTGGGATCCAGACCCACAACTATGGTATTTGTTCGTTAAAGATCGGCTGCCATCACGGCCATAGGAATCACCCTTGGTCAGCTTCATTTCTTCAAGTGGCAGATTACCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.8

Weight (kDa)

10.86

Isoelectric Point (pI)

46.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	118
AciI	CCGC	4 cut(s)	28, 31, 52, 199
AclWI	GGATC	3 cut(s)	307, 355, 368
AcoI	YGGCCR	2 cut(s)	193, 412
AcsI	RAATTY	1 cut(s)	227
AfaI	GTAC	1 cut(s)	261
AfeI	AGCGCT	1 cut(s)	295
AgsI	TTSAA	1 cut(s)	449
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	4 cut(s)	8, 97, 269, 437
AluI	AGCT	4 cut(s)	8, 97, 269, 437
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	3 cut(s)	307, 355, 368
AlwNI	CAGNNNCTG	1 cut(s)	350
Aor51HI	AGCGCT	1 cut(s)	295
AoxI	GGCC	3 cut(s)	111, 193, 412
ApeKI	GCWGC	2 cut(s)	291, 402
ApoI	RAATTY	1 cut(s)	227
AspLEI	GCGC	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	416
AxyI	CCTNAGG	1 cut(s)	40
BamHI	GGATCC	1 cut(s)	360
BanII	GRGCYC	1 cut(s)	10
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	303, 389
BccI	CCATC	1 cut(s)	414
BceAI	ACGGC	2 cut(s)	41, 427
BciT130I	CCWGG	1 cut(s)	317
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	1 cut(s)	297
BfoI	RGCGCY	1 cut(s)	297
BglI	GCCNNNNNGGC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	273
BisI	GCNGC	5 cut(s)	29, 32, 200, 292, 403
BlsI	GCNGC	5 cut(s)	30, 33, 201, 293, 404
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	317
BpmI	CTGGAG	1 cut(s)	360
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	128, 428
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	73
Bse21I	CCTNAGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	128, 428
BseMII	CTCAG	3 cut(s)	107, 242, 284
BseNI	ACTGG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	303, 389
BseYI	CCCAGC	1 cut(s)	139
Bsh1236I	CGCG	1 cut(s)	118
BshFI	GGCC	3 cut(s)	113, 195, 414
BsiHKAI	GWGCWC	1 cut(s)	10
BsiSI	CCGG	1 cut(s)	196
BslFI	GGGAC	1 cut(s)	206
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	206
BsnI	GGCC	3 cut(s)	113, 195, 414
Bso31I	GGTCTC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
Bsp19I	CCATGG	1 cut(s)	128
Bsp68I	TCGCGA	1 cut(s)	118
BspACI	CCGC	4 cut(s)	28, 31, 52, 199
BspANI	GGCC	3 cut(s)	113, 195, 414
BspCNI	CTCAG	3 cut(s)	106, 243, 283
BspFNI	CGCG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	362
BspPI	GGATC	3 cut(s)	307, 355, 368
BspTNI	GGTCTC	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	73
BssAI	RCCGGY	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	128, 428
BssMI	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
BssT1I	CCWWGG	2 cut(s)	128, 428
Bst2UI	CCWGG	1 cut(s)	317
BstC8I	GCNNGC	1 cut(s)	197
BstDEI	CTNAG	5 cut(s)	40, 93, 251, 270, 465
BstDSI	CCRYGG	1 cut(s)	128
BstFNI	CGCG	1 cut(s)	118
BstH2I	RGCGCY	1 cut(s)	297
BstHHI	GCGC	1 cut(s)	296
BstKTI	GATC	6 cut(s)	159, 185, 276, 315, 363, 399
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
BstMWI	GCNNNNNNNGC	1 cut(s)	411
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	118
BstV1I	GCAGC	2 cut(s)	303, 389
BstX2I	RGATCY	2 cut(s)	273, 360
BstXI	CCANNNNNNTGG	2 cut(s)	109, 377
BstYI	RGATCY	2 cut(s)	273, 360
Bsu36I	CCTNAGG	1 cut(s)	40
BsuRI	GGCC	3 cut(s)	113, 195, 414
BtgI	CCRYGG	1 cut(s)	128
BtuMI	TCGCGA	1 cut(s)	118
Cac8I	GCNNGC	1 cut(s)	197
CaiI	CAGNNNCTG	1 cut(s)	350
CfoI	GCGC	1 cut(s)	296
Cfr10I	RCCGGY	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	260
CviAII	CATG	2 cut(s)	129, 287
CviQI	GTAC	1 cut(s)	260
DdeI	CTNAG	5 cut(s)	40, 93, 251, 270, 465
DpnI	GATC	6 cut(s)	158, 184, 275, 314, 362, 398
DpnII	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
EaeI	YGGCCR	2 cut(s)	193, 412
Ecl136II	GAGCTC	1 cut(s)	8
Eco130I	CCWWGG	2 cut(s)	128, 428
Eco24I	GRGCYC	1 cut(s)	10
Eco31I	GGTCTC	1 cut(s)	170
Eco47III	AGCGCT	1 cut(s)	295
Eco53kI	GAGCTC	1 cut(s)	8
Eco81I	CCTNAGG	1 cut(s)	40
EcoICRI	GAGCTC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	2 cut(s)	128, 428
EcoT38I	GRGCYC	1 cut(s)	10
ErhI	CCWWGG	2 cut(s)	128, 428
FaeI	CATG	2 cut(s)	132, 290
FaiI	YATR	8 cut(s)	87, 130, 204, 279, 288, 303, 378, 417
FaqI	GGGAC	1 cut(s)	206
FatI	CATG	2 cut(s)	128, 286
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	5 cut(s)	29, 32, 200, 292, 403
FriOI	GRGCYC	1 cut(s)	10
Fsp4HI	GCNGC	5 cut(s)	29, 32, 200, 292, 403
FspBI	CTAG	1 cut(s)	297
GlaI	GCGC	1 cut(s)	295
GluI	GCNGC	5 cut(s)	29, 32, 200, 292, 403
GsaI	CCCAGC	1 cut(s)	143
GsuI	CTGGAG	1 cut(s)	360
HaeII	RGCGCY	1 cut(s)	297
HaeIII	GGCC	3 cut(s)	113, 195, 414
HapII	CCGG	1 cut(s)	196
HhaI	GCGC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	132, 290
Hin6I	GCGC	1 cut(s)	294
HinP1I	GCGC	1 cut(s)	294
HinfI	GANTC	3 cut(s)	120, 323, 421
HpaII	CCGG	1 cut(s)	196
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	245
Hpy188I	TCNGA	2 cut(s)	233, 273
Hpy188III	TCNNGA	3 cut(s)	117, 339, 364
Hpy8I	GTNNAC	1 cut(s)	245
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	174, 250
HpyCH4IV	ACGT	1 cut(s)	75
HpyF10VI	GCNNNNNNNGC	1 cut(s)	411
HpyF3I	CTNAG	5 cut(s)	40, 93, 251, 270, 465
HpySE526I	ACGT	1 cut(s)	75
Hsp92II	CATG	2 cut(s)	132, 290
HspAI	GCGC	1 cut(s)	294
KroI	GCCGGC	1 cut(s)	195
KroNI	GCCGGC	1 cut(s)	197
Kzo9I	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
LmnI	GCTCC	1 cut(s)	341
Lsp1109I	GCAGC	2 cut(s)	303, 389
MaeI	CTAG	1 cut(s)	297
MaeII	ACGT	1 cut(s)	75
MalI	GATC	6 cut(s)	158, 184, 275, 314, 362, 398
MboI	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
MboII	GAAGA	1 cut(s)	437
MflI	RGATCY	2 cut(s)	273, 360
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	1 cut(s)	227
MnlI	CCTC	6 cut(s)	124, 135, 141, 227, 246, 275
MroNI	GCCGGC	1 cut(s)	195
MseI	TTAA	1 cut(s)	392
MslI	CAYNNNNRTG	2 cut(s)	207, 375
MspA1I	CMGCKG	1 cut(s)	97
MspI	CCGG	1 cut(s)	196
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	411
NaeI	GCCGGC	1 cut(s)	197
NcoI	CCATGG	1 cut(s)	128
NdeII	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
NgoMIV	GCCGGC	1 cut(s)	195
NlaIII	CATG	2 cut(s)	132, 290
NlaIV	GGNNCC	1 cut(s)	362
NruI	TCGCGA	1 cut(s)	118
PdiI	GCCGGC	1 cut(s)	197
PfeI	GAWTC	3 cut(s)	120, 323, 421
PkrI	GCNGC	5 cut(s)	30, 33, 201, 293, 404
Psp124BI	GAGCTC	1 cut(s)	10
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	362
PstNI	CAGNNNCTG	1 cut(s)	350
PsuI	RGATCY	2 cut(s)	273, 360
PvuII	CAGCTG	1 cut(s)	97
RruI	TCGCGA	1 cut(s)	118
RsaI	GTAC	1 cut(s)	261
RsaNI	GTAC	1 cut(s)	260
RseI	CAYNNNNRTG	2 cut(s)	207, 375
SacI	GAGCTC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	392
SatI	GCNGC	5 cut(s)	29, 32, 200, 292, 403
Sau3AI	GATC	6 cut(s)	156, 182, 273, 312, 360, 396
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	1 cut(s)	10
SmiMI	CAYNNNNRTG	2 cut(s)	207, 375
Sse9I	AATT	1 cut(s)	227
SsiI	CCGC	4 cut(s)	28, 31, 52, 199
SspMI	CTAG	1 cut(s)	297
SstI	GAGCTC	1 cut(s)	10
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	2 cut(s)	128, 428
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	321
TasI	AATT	1 cut(s)	227
TauI	GCSGC	3 cut(s)	31, 34, 202
TfiI	GAWTC	3 cut(s)	120, 323, 421
Tru1I	TTAA	1 cut(s)	392
Tru9I	TTAA	1 cut(s)	392
TseI	GCWGC	2 cut(s)	291, 402
TspDTI	ATGAA	1 cut(s)	429
XapI	RAATTY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XspI	CTAG	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.