Rroxscaffold_2G00113560

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0008105
Physical Location & Seq
Forward (+)
39246131 .. 39250144
4014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113560.1

Sequence Viewer

Length: 444 bp
ATGGTCATGTTCGATACCCTTGGACGACTTCGATCTTTAGGTGGGAGAGTGCCTTCATTCCGGCGCCAAGTTGATTTTTGTCAAATTGTGCGTTGGAGTTCGATGGATAGTCAAACCACCGACTACTCAATTCACTACACGACTGCAATCCGTAGTGTAAAATCAGCGCTGCGCTTCGTCGCTGCTGCTCTTGTCTCACCTCCGGGAACACCAGCATGGGAGCTATCGCCCGAGCTTAGGATTAGGCCGAGATCACCCCCGACGCACCGTCTCGCGTCACGTCAAGATGACCTCGCCGAAGCACCGAACACACAGATTAACCTTCATCGTCCCGCATCAAAAGCCAAGTGCAAAGCACTCCCTCTTCCACCTATAAAAGGTCAATTCCTCTCTCCTCATTCATTACGCATTAAATGTTTGTCTAATATTATTCTGTCAACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.42

Weight (kDa)

10.86

Isoelectric Point (pI)

71.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 63
AccII CGCG 1 cut(s) 275
AciI CCGC 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 64
AfeI AGCGCT 1 cut(s) 168
AfiI CCNNNNNNNGG 2 cut(s) 237, 377
AhdI GACNNNNNGTC 1 cut(s) 267
AjiI CACGTC 1 cut(s) 281
AluBI AGCT 2 cut(s) 223, 235
AluI AGCT 2 cut(s) 223, 235
Alw26I GTCTC 2 cut(s) 199, 275
Ama87I CYCGRG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 168
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 169, 182, 185
AspLEI GCGC 3 cut(s) 66, 169, 174
AsuC2I CCSGG 1 cut(s) 204
AsuHPI GGTGA 2 cut(s) 189, 246
AvaI CYCGRG 1 cut(s) 230
BanI GGYRCC 1 cut(s) 63
BbvI GCAGC 3 cut(s) 156, 169, 172
BccI CCATC 1 cut(s) 97
BcnI CCSGG 1 cut(s) 204
BcoDI GTCTC 2 cut(s) 199, 275
BfoI RGCGCY 2 cut(s) 67, 170
BisI GCNGC 3 cut(s) 170, 183, 186
BlsI GCNGC 3 cut(s) 171, 184, 187
Bme1390I CCNGG 1 cut(s) 204
BmeRI GACNNNNNGTC 1 cut(s) 267
BmeT110I CYCGRG 1 cut(s) 230
BmgBI CACGTC 1 cut(s) 281
BmiI GGNNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 204
BmsI GCATC 1 cut(s) 344
Bpu10I CCTNAGC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 19
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 377
BseDI CCNNGG 1 cut(s) 19
BseLI CCNNNNNNNGG 2 cut(s) 237, 377
BseRI GAGGAG 1 cut(s) 384
BseXI GCAGC 3 cut(s) 156, 169, 172
Bsh1236I CGCG 1 cut(s) 275
BshFI GGCC 1 cut(s) 247
BshNI GGYRCC 1 cut(s) 63
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 2 cut(s) 61, 203
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 237, 377
BsmAI GTCTC 2 cut(s) 199, 275
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 230
Bsp143I GATC 2 cut(s) 32, 251
BspACI CCGC 1 cut(s) 333
BspANI GGCC 1 cut(s) 247
BspFNI CGCG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 65
BspT107I GGYRCC 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 2 cut(s) 32, 251
BssNI GRCGYC 1 cut(s) 64
BssT1I CCWWGG 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 269
Bst6I CTCTTC 1 cut(s) 369
BstACI GRCGYC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 236
BstENI CCTNNNNNAGG 1 cut(s) 375
BstFNI CGCG 1 cut(s) 275
BstH2I RGCGCY 2 cut(s) 67, 170
BstHHI GCGC 3 cut(s) 66, 169, 174
BstKTI GATC 2 cut(s) 35, 254
BstMAI GTCTC 2 cut(s) 199, 275
BstMBI GATC 2 cut(s) 32, 251
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 202
BstUI CGCG 1 cut(s) 275
BstV1I GCAGC 3 cut(s) 156, 169, 172
BsuRI GGCC 1 cut(s) 247
BtrI CACGTC 1 cut(s) 281
CfoI GCGC 3 cut(s) 66, 169, 174
CseI GACGC 2 cut(s) 264, 271
CviAII CATG 2 cut(s) 7, 216
CviJI RGCY 4 cut(s) 223, 235, 247, 344
CviKI_1 RGCY 4 cut(s) 223, 235, 247, 344
DdeI CTNAG 1 cut(s) 236
DinI GGCGCC 1 cut(s) 65
DpnI GATC 2 cut(s) 34, 253
DpnII GATC 2 cut(s) 32, 251
DriI GACNNNNNGTC 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 369
Eam1105I GACNNNNNGTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 369
Eco130I CCWWGG 1 cut(s) 19
Eco47III AGCGCT 1 cut(s) 168
Eco88I CYCGRG 1 cut(s) 230
EcoNI CCTNNNNNAGG 1 cut(s) 375
EcoT14I CCWWGG 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 65
EheI GGCGCC 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 19
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 2 cut(s) 10, 219
FaiI YATR 4 cut(s) 8, 217, 374, 442
FaqI GGGAC 1 cut(s) 315
FatI CATG 2 cut(s) 6, 215
FauI CCCGC 1 cut(s) 340
Fnu4HI GCNGC 3 cut(s) 170, 183, 186
Fsp4HI GCNGC 3 cut(s) 170, 183, 186
GlaI GCGC 3 cut(s) 65, 168, 173
GluI GCNGC 3 cut(s) 170, 183, 186
HaeII RGCGCY 2 cut(s) 67, 170
HaeIII GGCC 1 cut(s) 247
HapII CCGG 2 cut(s) 61, 203
HgaI GACGC 2 cut(s) 264, 271
HhaI GCGC 3 cut(s) 66, 169, 174
Hin1I GRCGYC 1 cut(s) 64
Hin1II CATG 2 cut(s) 10, 219
Hin6I GCGC 3 cut(s) 64, 167, 172
HinP1I GCGC 3 cut(s) 64, 167, 172
HincII GTYRAC 1 cut(s) 438
HindII GTYRAC 1 cut(s) 438
HpaII CCGG 2 cut(s) 61, 203
HphI GGTGA 2 cut(s) 189, 246
Hpy166II GTNNAC 1 cut(s) 438
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 1 cut(s) 438
Hpy99I CGWCG 2 cut(s) 182, 265
HpyAV CCTTC 2 cut(s) 63, 332
HpyCH4III ACNGT 1 cut(s) 269
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 146, 351
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 1 cut(s) 236
HpySE526I ACGT 1 cut(s) 280
Hsp92I GRCGYC 1 cut(s) 64
Hsp92II CATG 2 cut(s) 10, 219
HspAI GCGC 3 cut(s) 64, 167, 172
KasI GGCGCC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 32, 251
LmnI GCTCC 1 cut(s) 220
LpnPI CCDG 3 cut(s) 74, 216, 225
Lsp1109I GCAGC 3 cut(s) 156, 169, 172
LweI GCATC 1 cut(s) 344
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 1 cut(s) 276
MalI GATC 2 cut(s) 34, 253
MboI GATC 2 cut(s) 32, 251
MboII GAAGA 1 cut(s) 356
MluCI AATT 3 cut(s) 84, 129, 383
Mly113I GGCGCC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 74
MnlI CCTC 5 cut(s) 210, 302, 372, 398, 405
MseI TTAA 2 cut(s) 318, 411
MslI CAYNNNNRTG 1 cut(s) 214
MspI CCGG 2 cut(s) 61, 203
MspR9I CCNGG 1 cut(s) 204
MteI GCGCNGCGC 1 cut(s) 170
MvnI CGCG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 341
NarI GGCGCC 1 cut(s) 64
NciI CCSGG 1 cut(s) 204
NdeII GATC 2 cut(s) 32, 251
NlaIII CATG 2 cut(s) 10, 219
NlaIV GGNNCC 1 cut(s) 65
NmeAIII GCCGAG 1 cut(s) 273
NmuCI GTSAC 1 cut(s) 276
PfoI TCCNGGA 1 cut(s) 202
PkrI GCNGC 3 cut(s) 171, 184, 187
PluTI GGCGCC 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 65
RseI CAYNNNNRTG 1 cut(s) 214
SaqAI TTAA 2 cut(s) 318, 411
SatI GCNGC 3 cut(s) 170, 183, 186
Sau3AI GATC 2 cut(s) 32, 251
ScrFI CCNGG 1 cut(s) 204
SetI ASST 9 cut(s) 43, 202, 225, 237, 283, 294, 324, 373, 382
SfaNI GCATC 1 cut(s) 344
SfoI GGCGCC 1 cut(s) 65
SmiMI CAYNNNNRTG 1 cut(s) 214
Sse9I AATT 3 cut(s) 84, 129, 383
SsiI CCGC 1 cut(s) 333
SspDI GGCGCC 1 cut(s) 63
SspI AATATT 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 202
StyI CCWWGG 1 cut(s) 19
TaaI ACNGT 1 cut(s) 269
TaiI ACGT 1 cut(s) 283
TaqI TCGA 3 cut(s) 12, 31, 101
TasI AATT 3 cut(s) 84, 129, 383
Tru1I TTAA 2 cut(s) 318, 411
Tru9I TTAA 2 cut(s) 318, 411
TseFI GTSAC 1 cut(s) 276
TseI GCWGC 3 cut(s) 169, 182, 185
Tsp45I GTSAC 1 cut(s) 276
TspDTI ATGAA 3 cut(s) 45, 314, 390
TspGWI ACGGA 1 cut(s) 140
XagI CCTNNNNNAGG 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.