Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Reverse (-)

12204767 .. 12205553

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18441.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTTCGGTCTTGCCTTCCTATCCGTCACGACAAGCATGCTTCTCGGCAACGGAAACATGCTCTCCTCCTCTCGTTCATGGTGGTTGGGGTGAAAAAGAGATTGTGTTGAGTGGTGGGTTAGGATTGGTTTCGATTGTTGATCGTCTACGGCCAAGTCGAGCACGCCTCAAAGCAAATTTGTGGGAGAGATCTGCACCCTCAGCCAAGGGGCGTTTATTGGAGTTATGGTTGTTGGCTATGAAGGTGGTTGAGAGATGGTTAATTCGGAGACCGGTTTCGATTAAGGGTTTTTGTGGGAATCGGGACTGGTTCTCATCGATTCTTTTCAACAATCCTCTCTCCCTTGATGGGATATGCGACAACGTATTGGCATGTGCAGATCGGCTAGAACCTAGGTCGGGGTCAAAGGAGGGAGGCCGGGTCGGATTTGGATCCGGGCTTGGGGCAAGGTTTGGGTTTAGGACCCGGGTGGTTTTTGTGGGCCTTGGGCCTGGAATCCAATCTCTTTTTGCTCTTGGAAATATTGCCATTGTCTTTGGTTTGGCCTCTACATTGGTTTTGGTATTGGTTAATGGACCCACAACTATGGTATTTGTTCGTCAAGGATCGTCTGCCATCACGGCCATGTCTAGAATCACCCTTGGCCGGCTTCAATACCTTAGGTGGAAGATTGCCCTCATCCAGATGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

232

Amino Acids

25.05

Weight (kDa)

10.81

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	148
AclWI	GGATC	3 cut(s)	429, 442, 616
AcoI	YGGCCR	3 cut(s)	152, 624, 646
AcsI	RAATTY	1 cut(s)	178
AfiI	CCNNNNNNNGG	4 cut(s)	351, 401, 444, 648
AgeI	ACCGGT	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	331, 656
AjnI	CCWGG	1 cut(s)	493
Alw21I	GWGCWC	1 cut(s)	166
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	3 cut(s)	429, 442, 616
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	7 cut(s)	152, 418, 484, 491, 546, 624, 646
ApoI	RAATTY	1 cut(s)	178
AsiGI	ACCGGT	1 cut(s)	274
AspA2I	CCTAGG	1 cut(s)	395
AspS9I	GGNCC	4 cut(s)	465, 484, 491, 578
AsuC2I	CCSGG	4 cut(s)	422, 439, 469, 470
AsuHPI	GGTGA	2 cut(s)	104, 631
AvaI	CYCGRG	1 cut(s)	468
AvaII	GGWCC	2 cut(s)	465, 578
AvrII	CCTAGG	1 cut(s)	395
AxyI	CCTNAGG	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	166
BbvCI	CCTCAGC	1 cut(s)	202
BccI	CCATC	3 cut(s)	252, 344, 626
BceAI	ACGGC	2 cut(s)	167, 639
BcgI	CGANNNNNNTGC	4 cut(s)	21, 27, 55, 61
BciT130I	CCWGG	1 cut(s)	495
BcnI	CCSGG	4 cut(s)	422, 439, 469, 470
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	3 cut(s)	389, 396, 633
BglI	GCCNNNNNGGC	1 cut(s)	623
BglII	AGATCT	1 cut(s)	191
BlnI	CCTAGG	1 cut(s)	395
Bme1390I	CCNGG	5 cut(s)	422, 439, 469, 470, 495
Bme18I	GGWCC	2 cut(s)	465, 578
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	4 cut(s)	465, 484, 491, 578
BmiI	GGNNCC	3 cut(s)	436, 467, 580
BmrFI	CCNGG	5 cut(s)	422, 439, 469, 470, 495
BplI	GAGNNNNNCTC	2 cut(s)	153, 185
Bpu10I	CCTNAGC	1 cut(s)	202
BpuMI	CCSGG	4 cut(s)	422, 439, 469, 470
Bsa29I	ATCGAT	1 cut(s)	320
BsaBI	GATNNNNATC	1 cut(s)	433
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	5 cut(s)	207, 395, 468, 487, 643
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	6 cut(s)	49, 79, 215, 245, 408, 438
Bsc4I	CCNNNNNNNGG	4 cut(s)	351, 401, 444, 648
Bse118I	RCCGGY	2 cut(s)	274, 648
Bse1I	ACTGG	1 cut(s)	314
Bse21I	CCTNAGG	1 cut(s)	662
Bse8I	GATNNNNATC	1 cut(s)	433
BseBI	CCWGG	1 cut(s)	495
BseCI	ATCGAT	1 cut(s)	320
BseDI	CCNNGG	5 cut(s)	207, 395, 468, 487, 643
BseGI	GGATG	1 cut(s)	681
BseJI	GATNNNNATC	1 cut(s)	433
BseLI	CCNNNNNNNGG	4 cut(s)	351, 401, 444, 648
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	57, 60
BsgI	GTGCAG	2 cut(s)	180, 399
BshFI	GGCC	7 cut(s)	154, 420, 486, 493, 548, 626, 648
BshTI	ACCGGT	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	320
BsiHKAI	GWGCWC	1 cut(s)	166
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	5 cut(s)	275, 421, 438, 469, 649
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	4 cut(s)	351, 401, 444, 648
BsmAI	GTCTC	1 cut(s)	265
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	7 cut(s)	154, 420, 486, 493, 548, 626, 648
Bso31I	GGTCTC	1 cut(s)	265
BsoBI	CYCGRG	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	5 cut(s)	142, 191, 382, 434, 608
BspANI	GGCC	7 cut(s)	154, 420, 486, 493, 548, 626, 648
BspCNI	CTCAG	1 cut(s)	215
BspDI	ATCGAT	1 cut(s)	320
BspLI	GGNNCC	3 cut(s)	436, 467, 580
BspPI	GGATC	3 cut(s)	429, 442, 616
BspTNI	GGTCTC	1 cut(s)	265
BsrFI	RCCGGY	2 cut(s)	274, 648
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	2 cut(s)	274, 648
BssECI	CCNNGG	5 cut(s)	207, 395, 468, 487, 643
BssMI	GATC	5 cut(s)	142, 191, 382, 434, 608
BssT1I	CCWWGG	4 cut(s)	207, 395, 487, 643
Bst2UI	CCWGG	1 cut(s)	495
BstC8I	GCNNGC	3 cut(s)	40, 166, 650
BstDEI	CTNAG	2 cut(s)	202, 662
BstF5I	GGATG	1 cut(s)	681
BstKTI	GATC	5 cut(s)	145, 194, 385, 437, 611
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	5 cut(s)	142, 191, 382, 434, 608
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 623
BstNI	CCWGG	1 cut(s)	495
BstNSI	RCATGY	3 cut(s)	42, 63, 378
BstSCI	CCNGG	5 cut(s)	420, 437, 467, 468, 493
BstX2I	RGATCY	2 cut(s)	191, 434
BstXI	CCANNNNNNTGG	1 cut(s)	589
BstYI	RGATCY	2 cut(s)	191, 434
Bsu15I	ATCGAT	1 cut(s)	320
Bsu36I	CCTNAGG	1 cut(s)	662
BsuRI	GGCC	7 cut(s)	154, 420, 486, 493, 548, 626, 648
BsuTUI	ATCGAT	1 cut(s)	320
BtsCI	GGATG	1 cut(s)	681
Cac8I	GCNNGC	3 cut(s)	40, 166, 650
Cfr10I	RCCGGY	2 cut(s)	274, 648
Cfr13I	GGNCC	4 cut(s)	465, 484, 491, 578
Cfr9I	CCCGGG	1 cut(s)	468
ClaI	ATCGAT	1 cut(s)	320
CspAI	ACCGGT	1 cut(s)	274
CviAII	CATG	5 cut(s)	39, 60, 80, 375, 628
DdeI	CTNAG	2 cut(s)	202, 662
DpnI	GATC	5 cut(s)	144, 193, 384, 436, 610
DpnII	GATC	5 cut(s)	142, 191, 382, 434, 608
EaeI	YGGCCR	3 cut(s)	152, 624, 646
Eco130I	CCWWGG	4 cut(s)	207, 395, 487, 643
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	465, 578
Eco81I	CCTNAGG	1 cut(s)	662
Eco88I	CYCGRG	1 cut(s)	468
EcoO109I	RGGNCCY	1 cut(s)	465
EcoRII	CCWGG	1 cut(s)	493
EcoT14I	CCWWGG	4 cut(s)	207, 395, 487, 643
ErhI	CCWWGG	4 cut(s)	207, 395, 487, 643
FaeI	CATG	5 cut(s)	42, 63, 83, 378, 631
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	5 cut(s)	38, 59, 79, 374, 627
FblI	GTMKAC	1 cut(s)	148
FokI	GGATG	1 cut(s)	668
FspBI	CTAG	3 cut(s)	389, 396, 633
HaeIII	GGCC	7 cut(s)	154, 420, 486, 493, 548, 626, 648
HapII	CCGG	5 cut(s)	275, 421, 438, 469, 649
Hin1II	CATG	5 cut(s)	42, 63, 83, 378, 631
HinfI	GANTC	4 cut(s)	301, 322, 498, 636
HpaII	CCGG	5 cut(s)	275, 421, 438, 469, 649
HphI	GGTGA	2 cut(s)	104, 631
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	2 cut(s)	270, 428
Hpy188III	TCNNGA	4 cut(s)	30, 305, 633, 685
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	2 cut(s)	27, 238
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	2 cut(s)	197, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 623
HpyF3I	CTNAG	2 cut(s)	202, 662
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	5 cut(s)	42, 63, 83, 378, 631
KroI	GCCGGC	1 cut(s)	648
KroNI	GCCGGC	1 cut(s)	650
Kzo9I	GATC	5 cut(s)	142, 191, 382, 434, 608
LpnPI	CCDG	8 cut(s)	288, 295, 434, 451, 480, 482, 507, 662
MaeI	CTAG	3 cut(s)	389, 396, 633
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	27
MalI	GATC	5 cut(s)	144, 193, 384, 436, 610
MboI	GATC	5 cut(s)	142, 191, 382, 434, 608
MboII	GAAGA	1 cut(s)	682
MflI	RGATCY	2 cut(s)	191, 434
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	2 cut(s)	178, 264
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	9 cut(s)	78, 81, 179, 211, 348, 406, 410, 559, 689
MroNI	GCCGGC	1 cut(s)	648
MseI	TTAA	3 cut(s)	263, 285, 573
MslI	CAYNNNNRTG	3 cut(s)	587, 626, 686
MspI	CCGG	5 cut(s)	275, 421, 438, 469, 649
MspR9I	CCNGG	5 cut(s)	422, 439, 469, 470, 495
MvaI	CCWGG	1 cut(s)	495
MwoI	GCNNNNNNNGC	2 cut(s)	203, 623
NaeI	GCCGGC	1 cut(s)	650
NciI	CCSGG	4 cut(s)	422, 439, 469, 470
NdeII	GATC	5 cut(s)	142, 191, 382, 434, 608
NgoMIV	GCCGGC	1 cut(s)	648
NlaIII	CATG	5 cut(s)	42, 63, 83, 378, 631
NlaIV	GGNNCC	3 cut(s)	436, 467, 580
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	27
NspI	RCATGY	3 cut(s)	42, 63, 378
PaeI	GCATGC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PdiI	GCCGGC	1 cut(s)	650
PfeI	GAWTC	4 cut(s)	301, 322, 498, 636
PinAI	ACCGGT	1 cut(s)	274
PpuMI	RGGWCCY	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	465
Psp6I	CCWGG	1 cut(s)	493
PspGI	CCWGG	1 cut(s)	493
PspN4I	GGNNCC	3 cut(s)	436, 467, 580
PspPI	GGNCC	4 cut(s)	465, 484, 491, 578
PspPPI	RGGWCCY	1 cut(s)	465
PsuI	RGATCY	2 cut(s)	191, 434
RseI	CAYNNNNRTG	3 cut(s)	587, 626, 686
SaqAI	TTAA	3 cut(s)	263, 285, 573
Sau3AI	GATC	5 cut(s)	142, 191, 382, 434, 608
Sau96I	GGNCC	4 cut(s)	465, 484, 491, 578
ScrFI	CCNGG	5 cut(s)	422, 439, 469, 470, 495
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	7 cut(s)	249, 369, 397, 401, 455, 663, 668
SinI	GGWCC	2 cut(s)	465, 578
SmaI	CCCGGG	1 cut(s)	470
SmiMI	CAYNNNNRTG	3 cut(s)	587, 626, 686
SphI	GCATGC	1 cut(s)	42
Sse9I	AATT	2 cut(s)	178, 264
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	3 cut(s)	389, 396, 633
StyD4I	CCNGG	5 cut(s)	420, 437, 467, 468, 493
StyI	CCWWGG	4 cut(s)	207, 395, 487, 643
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	4 cut(s)	134, 160, 281, 320
TasI	AATT	2 cut(s)	178, 264
TfiI	GAWTC	4 cut(s)	301, 322, 498, 636
Tru1I	TTAA	3 cut(s)	263, 285, 573
Tru9I	TTAA	3 cut(s)	263, 285, 573
TseFI	GTSAC	1 cut(s)	27
Tsp45I	GTSAC	1 cut(s)	27
TspDTI	ATGAA	2 cut(s)	68, 257
TspGWI	ACGGA	2 cut(s)	15, 68
TspMI	CCCGGG	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	465, 578
XapI	RAATTY	1 cut(s)	178
XbaI	TCTAGA	1 cut(s)	632
XceI	RCATGY	3 cut(s)	42, 63, 378
XmaI	CCCGGG	1 cut(s)	468
XmaJI	CCTAGG	1 cut(s)	395
XmiI	GTMKAC	1 cut(s)	148
XspI	CTAG	3 cut(s)	389, 396, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.