Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008105

Physical Location & Seq

Genomic Coordinates Forward (+)

59279587 .. 59280175

Gene Structure 589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009874

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGCGGCACGTCTCTTGGCCGTTGTATTCTAAACCTGCTCCATTCATGGAGATACTTCCAAGCTTCAGCCTCTGTGTGTTGGCTCTTGCCGTTCTCGATGGTAGAGTGCTGTTTGAGGAGAGTTTTGGCGTTAGGGTAGTCATGCCTGCGAGCCAAAGGGTTTTTGAGTCGAAGAAGGAAGGCGAAGGTGGTTGTTGGAAGGAGTGGGATCCGGGTAGAGGGTTGAATATGCTCCCTCTCTCTCACGGTTGGTGTTTGCTGGGGATTCCGTTGGTTTCAAAGCAAGTAGTGATATTGACGGTGGGAGTAGTGGGTGAGGTGGTGCAGGTTATTGTTCATCGTGTGGTGGCACGGCGGTCTTTGGGTGCACAGGTGACAGAAGTCTTGACTATCATGTTAACCGGAATTCTAGGAGAAGACATTGTTGGGCTTGGGTTCAAGTTTGTTATTTGGACTTGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

17.16

Weight (kDa)

6.3

Isoelectric Point (pI)

33.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008105)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g19230 FvH4_2g00620 FvH4_2g11351 FvH4_2g13181 FvH4_4g24831 FvH4_5g16981 FvH4_5g22602 FvH4_6g18441
rosa_chinensis	RchiOBHm_Chr5g0038221 RchiOBHm_Chr5g0046921
rosa_laevigata	RLG00000003478 RLG00000004319 RLG00000007966 RLG00000009874 RLG00000028742
rosa_multiflora	Rmu_sc0002356.1_g000009 Rmu_ssc0000245.1_g000015
rosa_roxburghii	Rroxscaffold_171G00441510 Rroxscaffold_1G00056130 Rroxscaffold_2G00113560
rosa_rugosa	Rorug06G0488700
rosa_samantha	Rh5DG137500 Rh6BG137500 Rh6CG135400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	46, 319
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	2 cut(s)	7, 358
AclWI	GGATC	2 cut(s)	206, 219
AcoI	YGGCCR	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	408
AcuI	CTGAAG	1 cut(s)	52
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	3 cut(s)	229, 282, 442
AjiI	CACGTC	1 cut(s)	13
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AluBI	AGCT	1 cut(s)	66
AluI	AGCT	1 cut(s)	66
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	1 cut(s)	19
Alw44I	GTGCAC	1 cut(s)	369
AlwI	GGATC	2 cut(s)	206, 219
AlwNI	CAGNNNCTG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	20
ApaLI	GTGCAC	1 cut(s)	369
ApoI	RAATTY	1 cut(s)	408
AsuC2I	CCSGG	1 cut(s)	216
AsuHPI	GGTGA	2 cut(s)	329, 388
BaeGI	GKGCMC	1 cut(s)	373
BamHI	GGATCC	1 cut(s)	211
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	373
BccI	CCATC	1 cut(s)	95
BceAI	ACGGC	3 cut(s)	7, 77, 371
BcnI	CCSGG	1 cut(s)	216
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	413
BfuAI	ACCTGC	2 cut(s)	46, 319
BisI	GCNGC	1 cut(s)	8
BlsI	GCNGC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	216
BmgBI	CACGTC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	213
BmrFI	CCNGG	1 cut(s)	216
BoxI	GACNNNNGTC	1 cut(s)	383
BpiI	GAAGAC	1 cut(s)	426
BpuMI	CCSGG	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	404
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	262
BsgI	GTGCAG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	22
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	2 cut(s)	215, 405
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	19
BsmBI	CGTCTC	1 cut(s)	19
BsnI	GGCC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	373
Bsp143I	GATC	1 cut(s)	211
BspACI	CCGC	2 cut(s)	7, 358
BspANI	GGCC	1 cut(s)	22
BspLI	GGNNCC	1 cut(s)	213
BspMI	ACCTGC	2 cut(s)	46, 319
BspPI	GGATC	2 cut(s)	206, 219
BsrBI	CCGCTC	1 cut(s)	7
BssMI	GATC	1 cut(s)	211
Bst4CI	ACNGT	2 cut(s)	251, 304
BstC8I	GCNNGC	2 cut(s)	150, 154
BstKTI	GATC	1 cut(s)	214
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	211
BstPAI	GACNNNNGTC	1 cut(s)	383
BstSCI	CCNGG	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	373
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	13
BveI	ACCTGC	2 cut(s)	46, 319
Cac8I	GCNNGC	2 cut(s)	150, 154
CaiI	CAGNNNCTG	1 cut(s)	75
CviAII	CATG	3 cut(s)	49, 145, 397
CviJI	RGCY	6 cut(s)	22, 66, 72, 86, 156, 433
CviKI_1	RGCY	6 cut(s)	22, 66, 72, 86, 156, 433
DpnI	GATC	1 cut(s)	213
DpnII	GATC	1 cut(s)	211
EaeI	YGGCCR	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	52
EcoRI	GAATTC	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	19
FaeI	CATG	3 cut(s)	52, 148, 400
FaiI	YATR	4 cut(s)	50, 146, 233, 398
FatI	CATG	3 cut(s)	48, 144, 396
Fnu4HI	GCNGC	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	8
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	8
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	1 cut(s)	22
HapII	CCGG	2 cut(s)	215, 405
Hin1II	CATG	3 cut(s)	52, 148, 400
HincII	GTYRAC	1 cut(s)	402
HindII	GTYRAC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	2 cut(s)	170, 268
HpaI	GTTAAC	1 cut(s)	402
HpaII	CCGG	2 cut(s)	215, 405
HphI	GGTGA	2 cut(s)	329, 388
Hpy166II	GTNNAC	2 cut(s)	371, 402
Hpy188III	TCNNGA	2 cut(s)	98, 388
Hpy8I	GTNNAC	2 cut(s)	371, 402
HpyAV	CCTTC	4 cut(s)	172, 176, 182, 196
HpyCH4III	ACNGT	2 cut(s)	251, 304
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	2 cut(s)	328, 371
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	3 cut(s)	52, 148, 400
KspAI	GTTAAC	1 cut(s)	402
Kzo9I	GATC	1 cut(s)	211
LmnI	GCTCC	3 cut(s)	4, 46, 240
LpnPI	CCDG	7 cut(s)	51, 162, 228, 248, 314, 359, 418
MaeI	CTAG	1 cut(s)	413
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	1 cut(s)	213
MbiI	CCGCTC	1 cut(s)	7
MboI	GATC	1 cut(s)	211
MboII	GAAGA	2 cut(s)	187, 431
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	373
MluCI	AATT	1 cut(s)	408
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	179
MnlI	CCTC	5 cut(s)	83, 112, 215, 249, 313
MseI	TTAA	1 cut(s)	401
MspI	CCGG	2 cut(s)	215, 405
MspR9I	CCNGG	1 cut(s)	216
NciI	CCSGG	1 cut(s)	216
NdeII	GATC	1 cut(s)	211
NlaIII	CATG	3 cut(s)	52, 148, 400
NlaIV	GGNNCC	1 cut(s)	213
NmuCI	GTSAC	1 cut(s)	376
PfeI	GAWTC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	9
PleI	GAGTC	1 cut(s)	178
PpsI	GAGTC	1 cut(s)	178
PshAI	GACNNNNGTC	1 cut(s)	383
PspFI	CCCAGC	1 cut(s)	262
PspN4I	GGNNCC	1 cut(s)	213
PstNI	CAGNNNCTG	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	401
SatI	GCNGC	1 cut(s)	8
Sau3AI	GATC	1 cut(s)	211
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	1 cut(s)	216
SduI	GDGCHC	1 cut(s)	373
SetI	ASST	7 cut(s)	15, 40, 68, 193, 324, 333, 378
Sse9I	AATT	1 cut(s)	408
SsiI	CCGC	2 cut(s)	7, 358
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	214
TaaI	ACNGT	2 cut(s)	251, 304
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	2 cut(s)	99, 173
TasI	AATT	1 cut(s)	408
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	268
Tru1I	TTAA	1 cut(s)	401
Tru9I	TTAA	1 cut(s)	401
TseFI	GTSAC	1 cut(s)	376
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	2 cut(s)	37, 329
TspGWI	ACGGA	1 cut(s)	261
VneI	GTGCAC	1 cut(s)	369
XapI	RAATTY	1 cut(s)	408
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.