Rh5DG137500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0008105
Physical Location & Seq
Forward (+)
13855723 .. 13856055
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG137500.1

Sequence Viewer

Length: 333 bp
ATGCCGGCGAGCCAAAGGAATTTTGGATTGACGAAGGAAGGCAGCGGTGGTTGTCGGAAGGAGTGGGATTCGGGTAGTGGGTTGAATATGTTCCCTCTATCTTACGGTGGTCTTAGTAGGTCGTACCATTCTGGCGCTGACGGTGTGAGTGGGCTGTGGTCTGGTGTAGGTGACCTTGTTTGGGCAGTCGGTGATCTTCGAGATCTGCGTGGTGAGGTAGAGGACGACCCTTTGATCGGAGGCATGGCAGAGACAGATACCGGGTGTGTCGTCTGCGGTAAGGTCGATTGCCCAGATGCTTTGGGTATGGGGCGCAGACCTAATGGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

11.47

Weight (kDa)

4.64

Isoelectric Point (pI)

32.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 45, 276
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 181, 236
AgsI TTSAA 1 cut(s) 85
Alw26I GTCTC 1 cut(s) 245
ApeKI GCWGC 1 cut(s) 42
ApoI RAATTY 1 cut(s) 19
Asp700I GAANNNNTTC 1 cut(s) 89
AspLEI GCGC 2 cut(s) 137, 315
AsuC2I CCSGG 1 cut(s) 262
AsuHPI GGTGA 3 cut(s) 182, 203, 224
BbvI GCAGC 1 cut(s) 54
BcnI CCSGG 1 cut(s) 262
BcoDI GTCTC 1 cut(s) 245
BfaI CTAG 1 cut(s) 331
BfoI RGCGCY 1 cut(s) 138
BglII AGATCT 1 cut(s) 202
BisI GCNGC 1 cut(s) 43
BlsI GCNGC 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 262
BmrFI CCNGG 1 cut(s) 262
BmsI GCATC 1 cut(s) 286
BpuMI CCSGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 236
Bse118I RCCGGY 1 cut(s) 4
BseLI CCNNNNNNNGG 2 cut(s) 181, 236
BseXI GCAGC 1 cut(s) 54
BsiSI CCGG 2 cut(s) 5, 261
BslI CCNNNNNNNGG 2 cut(s) 181, 236
BsmAI GTCTC 1 cut(s) 245
Bsp143I GATC 3 cut(s) 193, 202, 234
BspACI CCGC 2 cut(s) 45, 276
BsrFI RCCGGY 1 cut(s) 4
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 3 cut(s) 193, 202, 234
Bst4CI ACNGT 2 cut(s) 107, 143
BstC8I GCNNGC 2 cut(s) 6, 10
BstDEI CTNAG 1 cut(s) 113
BstEII GGTNACC 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 137, 315
BstKTI GATC 3 cut(s) 196, 205, 237
BstMAI GTCTC 1 cut(s) 245
BstMBI GATC 3 cut(s) 193, 202, 234
BstPI GGTNACC 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 260
BstV1I GCAGC 1 cut(s) 54
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 6, 10
CfoI GCGC 2 cut(s) 137, 315
Cfr10I RCCGGY 1 cut(s) 4
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 244
CviJI RGCY 2 cut(s) 12, 154
CviKI_1 RGCY 2 cut(s) 12, 154
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 113
DpnI GATC 3 cut(s) 195, 204, 236
DpnII GATC 3 cut(s) 193, 202, 234
Eco91I GGTNACC 1 cut(s) 170
EcoO65I GGTNACC 1 cut(s) 170
FaeI CATG 1 cut(s) 247
FaiI YATR 3 cut(s) 89, 245, 308
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 1 cut(s) 43
Fsp4HI GCNGC 1 cut(s) 43
FspBI CTAG 1 cut(s) 331
GlaI GCGC 2 cut(s) 136, 314
GluI GCNGC 1 cut(s) 43
HaeII RGCGCY 1 cut(s) 138
HapII CCGG 2 cut(s) 5, 261
HhaI GCGC 2 cut(s) 137, 315
Hin1II CATG 1 cut(s) 247
Hin6I GCGC 2 cut(s) 135, 313
HinP1I GCGC 2 cut(s) 135, 313
HinfI GANTC 1 cut(s) 68
HpaII CCGG 2 cut(s) 5, 261
HphI GGTGA 3 cut(s) 182, 203, 224
Hpy188I TCNGA 2 cut(s) 57, 239
Hpy188III TCNNGA 1 cut(s) 200
HpyAV CCTTC 3 cut(s) 28, 32, 52
HpyCH4III ACNGT 2 cut(s) 107, 143
HpyF3I CTNAG 1 cut(s) 113
Hsp92II CATG 1 cut(s) 247
HspAI GCGC 2 cut(s) 135, 313
KroI GCCGGC 1 cut(s) 4
KroNI GCCGGC 1 cut(s) 6
Kzo9I GATC 3 cut(s) 193, 202, 234
LpnPI CCDG 5 cut(s) 18, 117, 147, 274, 306
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 1 cut(s) 286
MaeI CTAG 1 cut(s) 331
MaeIII GTNAC 1 cut(s) 170
MalI GATC 3 cut(s) 195, 204, 236
MboI GATC 3 cut(s) 193, 202, 234
MboII GAAGA 1 cut(s) 188
MflI RGATCY 1 cut(s) 202
MluCI AATT 1 cut(s) 19
MmeI TCCRAC 1 cut(s) 35
MnlI CCTC 4 cut(s) 105, 208, 214, 233
MroNI GCCGGC 1 cut(s) 4
MroXI GAANNNNTTC 1 cut(s) 89
MspA1I CMGCKG 1 cut(s) 45
MspI CCGG 2 cut(s) 5, 261
MspR9I CCNGG 1 cut(s) 262
NaeI GCCGGC 1 cut(s) 6
NciI CCSGG 1 cut(s) 262
NdeII GATC 3 cut(s) 193, 202, 234
NgoMIV GCCGGC 1 cut(s) 4
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 170
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PdiI GCCGGC 1 cut(s) 6
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 44
PspEI GGTNACC 1 cut(s) 170
PsuI RGATCY 1 cut(s) 202
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
SatI GCNGC 1 cut(s) 43
Sau3AI GATC 3 cut(s) 193, 202, 234
ScrFI CCNGG 1 cut(s) 262
SetI ASST 6 cut(s) 122, 172, 177, 219, 285, 322
SfaNI GCATC 1 cut(s) 286
Sse9I AATT 1 cut(s) 19
SsiI CCGC 2 cut(s) 45, 276
SspMI CTAG 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 260
TaaI ACNGT 2 cut(s) 107, 143
TaqI TCGA 2 cut(s) 199, 285
TasI AATT 1 cut(s) 19
TfiI GAWTC 1 cut(s) 68
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 1 cut(s) 42
Tsp45I GTSAC 1 cut(s) 170
XapI RAATTY 1 cut(s) 19
XcmI CCANNNNNNNNNTGG 1 cut(s) 20
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 1 cut(s) 331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.