FvH4_1g19640

Magnesium-dependent phosphatase

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Reverse (-)
11873043 .. 11874313
1271 bp
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UTR
Exon/CDS
Intron
FvH4_1g19640.t1

Sequence Viewer

Length: 522 bp
ATGGGAGACACCGACGACAAGGTGAAGAGCGAAGCTCTCCAGATAATCGCCCAACACAGCCACAACTTACCTGCTCTCGTCGTCTTCGACCTCGACTACACTCTCTGGCCTTTCTACTGCGAATACGAAGAAGACGACATGCCGTATCTCTACCCACAAGCCTTGCCCATACTACACGCCCTCAAACAAAACGGAATATCTATGGCCGTCGCTTCAAGATCCCCTACTTCCGATGTTGCCAAGTCTTTCCTTCAAACTCTGGGCATCAGCTCCTTCTTTGTGACCCAGGAGATATTTTCGAGCTGGACTCATAAAACAGAGCATTTTCAGAGGATCCATGCAACTACTGGGGTGCCCTTTACCTCAATGCTCTTCTTTGATGATGAGGATAGGAATATTCATGCGGTATCGAAAATGGGGGTGACGAGCATTTTGGTTGGTAATGGGGTGAACCTTGGAGCTTTGAGGCAGGGATTGTCCGAGTTTGCGAGAAAGTCAGCTTCGTCTAGCAGGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.33

Weight (kDa)

5.74

Isoelectric Point (pI)

58.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_PPase PF12689 23 - 42 4.5e-06 Acid Phosphatase
Hydrolase PF00702 37 - 135 3.6e-06 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 43 - 146 4.5e-08 Haloacid dehalogenase-like hydrolase
Acid_PPase PF12689 50 - 164 3.8e-27 Acid Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 79
AccB1I GGYRCC 1 cut(s) 352
AciI CCGC 1 cut(s) 404
AclWI GGATC 3 cut(s) 213, 328, 341
AcoI YGGCCR 1 cut(s) 204
AgsI TTSAA 2 cut(s) 216, 254
AjnI CCWGG 1 cut(s) 285
AluBI AGCT 5 cut(s) 35, 270, 303, 461, 500
AluI AGCT 5 cut(s) 35, 270, 303, 461, 500
AlwI GGATC 3 cut(s) 213, 328, 341
AoxI GGCC 2 cut(s) 107, 204
ArsI GACNNNNNNTTYG 2 cut(s) 415, 447
AsuHPI GGTGA 3 cut(s) 34, 433, 460
BaeGI GKGCMC 1 cut(s) 357
BamHI GGATCC 1 cut(s) 333
BanI GGYRCC 1 cut(s) 352
BbsI GAAGAC 2 cut(s) 76, 138
BceAI ACGGC 2 cut(s) 127, 191
BciT130I CCWGG 1 cut(s) 287
BfaI CTAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 79
Bme1390I CCNGG 1 cut(s) 287
BmiI GGNNCC 2 cut(s) 335, 354
BmrFI CCNGG 1 cut(s) 287
BmrI ACTGGG 1 cut(s) 357
BmsI GCATC 1 cut(s) 273
BmuI ACTGGG 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 76, 138
BplI GAGNNNNNCTC 4 cut(s) 19, 51, 292, 324
BpmI CTGGAG 1 cut(s) 23
BsaJI CCNNGG 2 cut(s) 285, 454
Bse1I ACTGG 1 cut(s) 352
BseBI CCWGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 285, 454
BseNI ACTGG 1 cut(s) 352
BseSI GKGCMC 1 cut(s) 357
BshFI GGCC 2 cut(s) 109, 206
BshNI GGYRCC 1 cut(s) 352
BsnI GGCC 2 cut(s) 109, 206
Bsp1286I GDGCHC 1 cut(s) 357
Bsp143I GATC 2 cut(s) 218, 333
BspACI CCGC 1 cut(s) 404
BspANI GGCC 2 cut(s) 109, 206
BspLI GGNNCC 2 cut(s) 335, 354
BspMI ACCTGC 1 cut(s) 79
BspPI GGATC 3 cut(s) 213, 328, 341
BspQI GCTCTTC 2 cut(s) 20, 377
BspT107I GGYRCC 1 cut(s) 352
BsrI ACTGG 1 cut(s) 352
BssECI CCNNGG 2 cut(s) 285, 454
BssMI GATC 2 cut(s) 218, 333
BssT1I CCWWGG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 287
Bst6I CTCTTC 2 cut(s) 20, 377
BstKTI GATC 2 cut(s) 221, 336
BstMBI GATC 2 cut(s) 218, 333
BstNI CCWGG 1 cut(s) 287
BstNSI RCATGY 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 285
BstSLI GKGCMC 1 cut(s) 357
BstV2I GAAGAC 2 cut(s) 76, 138
BstX2I RGATCY 2 cut(s) 218, 333
BstYI RGATCY 2 cut(s) 218, 333
BsuRI GGCC 2 cut(s) 109, 206
BveI ACCTGC 1 cut(s) 79
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 3 cut(s) 139, 338, 401
CviJI RGCY 9 cut(s) 35, 60, 109, 161, 206, 270, 303, 461, 500
CviKI_1 RGCY 9 cut(s) 35, 60, 109, 161, 206, 270, 303, 461, 500
DpnI GATC 2 cut(s) 220, 335
DpnII GATC 2 cut(s) 218, 333
EaeI YGGCCR 1 cut(s) 204
Eam1104I CTCTTC 2 cut(s) 20, 377
EarI CTCTTC 2 cut(s) 20, 377
Eco130I CCWWGG 1 cut(s) 454
EcoRII CCWGG 1 cut(s) 285
EcoT14I CCWWGG 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 454
FaeI CATG 3 cut(s) 142, 341, 404
FaiI YATR 6 cut(s) 140, 170, 203, 312, 339, 402
FatI CATG 3 cut(s) 138, 337, 400
FspBI CTAG 1 cut(s) 507
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 2 cut(s) 109, 206
Hin1II CATG 3 cut(s) 142, 341, 404
HinfI GANTC 1 cut(s) 307
HphI GGTGA 3 cut(s) 34, 433, 460
Hpy166II GTNNAC 1 cut(s) 451
Hpy188I TCNGA 3 cut(s) 232, 330, 481
Hpy188III TCNNGA 2 cut(s) 40, 216
Hpy8I GTNNAC 1 cut(s) 451
Hpy99I CGWCG 3 cut(s) 17, 83, 212
HpyAV CCTTC 2 cut(s) 260, 283
HpyCH4V TGCA 1 cut(s) 341
Hsp92II CATG 3 cut(s) 142, 341, 404
Kzo9I GATC 2 cut(s) 218, 333
LguI GCTCTTC 2 cut(s) 20, 377
LmnI GCTCC 2 cut(s) 275, 458
LweI GCATC 1 cut(s) 273
MaeI CTAG 1 cut(s) 507
MaeIII GTNAC 2 cut(s) 280, 421
MalI GATC 2 cut(s) 220, 335
MboI GATC 2 cut(s) 218, 333
MboII GAAGA 5 cut(s) 37, 76, 140, 143, 364
MflI RGATCY 2 cut(s) 218, 333
MhlI GDGCHC 1 cut(s) 357
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 7 cut(s) 101, 191, 324, 373, 379, 459, 507
MspR9I CCNGG 1 cut(s) 287
MvaI CCWGG 1 cut(s) 287
NdeII GATC 2 cut(s) 218, 333
NlaIII CATG 3 cut(s) 142, 341, 404
NlaIV GGNNCC 2 cut(s) 335, 354
NmuCI GTSAC 2 cut(s) 280, 421
NspI RCATGY 1 cut(s) 142
PciSI GCTCTTC 2 cut(s) 20, 377
PcsI WCGNNNNNNNCGW 2 cut(s) 84, 132
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 285
PspGI CCWGG 1 cut(s) 285
PspN4I GGNNCC 2 cut(s) 335, 354
PsuI RGATCY 2 cut(s) 218, 333
SapI GCTCTTC 2 cut(s) 20, 377
Sau3AI GATC 2 cut(s) 218, 333
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 357
SfaNI GCATC 1 cut(s) 273
SsiI CCGC 1 cut(s) 404
SspI AATATT 1 cut(s) 397
SspMI CTAG 1 cut(s) 507
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 454
TaqI TCGA 4 cut(s) 87, 93, 299, 410
TseFI GTSAC 2 cut(s) 280, 421
Tsp45I GTSAC 2 cut(s) 280, 421
TspDTI ATGAA 1 cut(s) 389
TspGWI ACGGA 1 cut(s) 207
XceI RCATGY 1 cut(s) 142
XcmI CCANNNNNNNNNTGG 1 cut(s) 344
XspI CTAG 1 cut(s) 507
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.