Rroxscaffold_2G00132620

Magnesium-dependent phosphatase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
69631879 .. 69632901
1023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00132620.1

Sequence Viewer

Length: 525 bp
ATGGGAGACGACATTAACGAGGAGGTGAAGAAGAAAGCTGTCCAGATAATCACACAACACAGCCAGAACTTACCTTCTCTCGTCGTCTTCGATCTCGACTACACTCTCTGGCCTTTCTACTGCGAATTTGAAGAAGCTGACATGCCATATCTGTATCGACAAGCCTTGCCCATCTTGCATGCTTTCAAAGAGAAGGGAGTATCAATGGCCGTGGCCTCAAGATCCCCAACTCCAGATGTAGCCAAATCTTTCCTTCAAACTTTGGGCATCAGCTCCTTCTTTGTGACCCAGGAGATTTTCTCGAGCAGGACTCACAAAACAGAGCATTTTCAGAAGATTCATGCAACAACGGGGGTGCCCTTTACCTCAATGCTGTTCTTTGATGATGAGGATAGGAATGTTCATGCGGTATCGAAAATGGGGGTGACAAGCATTTTAGTTGGTAATGGGGTGAACCTTGGAGCTTTGGAGCAGGGATTGTCTGAGTTTTCAAGAAAGTCAGCTTCATCTAGCAGGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.5

Weight (kDa)

6.05

Isoelectric Point (pI)

52.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_PPase PF12689 24 - 43 3.3e-06 Acid Phosphatase
HAD_2 PF13419 47 - 147 7.8e-06 Haloacid dehalogenase-like hydrolase
Acid_PPase PF12689 51 - 165 9.9e-28 Acid Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 355
AciI CCGC 1 cut(s) 407
AclWI GGATC 1 cut(s) 216
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 1 cut(s) 125
AgsI TTSAA 4 cut(s) 131, 187, 257, 492
AjnI CCWGG 1 cut(s) 288
AluBI AGCT 5 cut(s) 38, 137, 273, 464, 503
AluI AGCT 5 cut(s) 38, 137, 273, 464, 503
AlwI GGATC 1 cut(s) 216
Ama87I CYCGRG 1 cut(s) 301
AoxI GGCC 3 cut(s) 110, 207, 213
ApoI RAATTY 1 cut(s) 125
AsuHPI GGTGA 3 cut(s) 37, 436, 463
AvaI CYCGRG 1 cut(s) 301
BaeGI GKGCMC 1 cut(s) 360
BanI GGYRCC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 79
BccI CCATC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 194
BciT130I CCWGG 1 cut(s) 290
BfaI CTAG 1 cut(s) 510
Bme1390I CCNGG 1 cut(s) 290
BmeT110I CYCGRG 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 357
BmrFI CCNGG 1 cut(s) 290
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 79
BplI GAGNNNNNCTC 4 cut(s) 284, 316, 295, 327
BpmI CTGGAG 1 cut(s) 216
BpuEI CTTGAG 1 cut(s) 202
BsaJI CCNNGG 3 cut(s) 210, 288, 457
BseBI CCWGG 1 cut(s) 290
BseDI CCNNGG 3 cut(s) 210, 288, 457
BseMII CTCAG 1 cut(s) 474
BseRI GAGGAG 1 cut(s) 35
BseSI GKGCMC 1 cut(s) 360
BshFI GGCC 3 cut(s) 112, 209, 215
BshNI GGYRCC 1 cut(s) 355
BsiHKCI CYCGRG 1 cut(s) 301
BsnI GGCC 3 cut(s) 112, 209, 215
BsoBI CYCGRG 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 360
Bsp143I GATC 2 cut(s) 91, 221
BspACI CCGC 1 cut(s) 407
BspANI GGCC 3 cut(s) 112, 209, 215
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 357
BspPI GGATC 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 210, 288, 457
BssMI GATC 2 cut(s) 91, 221
BssT1I CCWWGG 1 cut(s) 457
Bst2UI CCWGG 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 180
BstDEI CTNAG 1 cut(s) 483
BstDSI CCRYGG 1 cut(s) 210
BstKTI GATC 2 cut(s) 94, 224
BstMBI GATC 2 cut(s) 91, 221
BstMWI GCNNNNNNNGC 1 cut(s) 175
BstNI CCWGG 1 cut(s) 290
BstNSI RCATGY 2 cut(s) 145, 182
BstSCI CCNGG 1 cut(s) 288
BstSLI GKGCMC 1 cut(s) 360
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BsuRI GGCC 3 cut(s) 112, 209, 215
BtgI CCRYGG 1 cut(s) 210
Cac8I GCNNGC 1 cut(s) 180
CspCI CAANNNNNGTGG 2 cut(s) 192, 227
CviAII CATG 4 cut(s) 142, 179, 341, 404
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 93, 223
DpnII GATC 2 cut(s) 91, 221
EaeI YGGCCR 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 457
Eco88I CYCGRG 1 cut(s) 301
EcoRII CCWGG 1 cut(s) 288
EcoT14I CCWWGG 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 457
FaeI CATG 4 cut(s) 145, 182, 344, 407
FaiI YATR 5 cut(s) 143, 148, 180, 342, 405
FatI CATG 4 cut(s) 141, 178, 340, 403
FspBI CTAG 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 216
HaeIII GGCC 3 cut(s) 112, 209, 215
Hin1II CATG 4 cut(s) 145, 182, 344, 407
HinfI GANTC 2 cut(s) 310, 337
HphI GGTGA 3 cut(s) 37, 436, 463
Hpy166II GTNNAC 1 cut(s) 454
Hpy188I TCNGA 2 cut(s) 333, 484
Hpy188III TCNNGA 6 cut(s) 43, 95, 219, 233, 301, 492
Hpy8I GTNNAC 1 cut(s) 454
Hpy99I CGWCG 1 cut(s) 86
HpyAV CCTTC 4 cut(s) 84, 187, 263, 286
HpyCH4V TGCA 2 cut(s) 178, 344
HpyF10VI GCNNNNNNNGC 1 cut(s) 175
HpyF3I CTNAG 1 cut(s) 483
Hsp92II CATG 4 cut(s) 145, 182, 344, 407
Kzo9I GATC 2 cut(s) 91, 221
LmnI GCTCC 3 cut(s) 278, 461, 469
LpnPI CCDG 9 cut(s) 56, 77, 94, 246, 275, 292, 302, 458, 499
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 510
MaeIII GTNAC 2 cut(s) 283, 424
MalI GATC 2 cut(s) 93, 223
MboI GATC 2 cut(s) 91, 221
MboII GAAGA 5 cut(s) 40, 43, 79, 143, 346
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 360
MluCI AATT 1 cut(s) 125
MlyI GAGTC 1 cut(s) 304
MnlI CCTC 6 cut(s) 13, 16, 226, 376, 382, 510
MseI TTAA 1 cut(s) 15
MspR9I CCNGG 1 cut(s) 290
MvaI CCWGG 1 cut(s) 290
MwoI GCNNNNNNNGC 1 cut(s) 175
NdeII GATC 2 cut(s) 91, 221
NlaIII CATG 4 cut(s) 145, 182, 344, 407
NlaIV GGNNCC 1 cut(s) 357
NmuCI GTSAC 2 cut(s) 283, 424
NspI RCATGY 2 cut(s) 145, 182
PaeI GCATGC 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 301
PcsI WCGNNNNNNNCGW 2 cut(s) 15, 87
PfeI GAWTC 1 cut(s) 337
PleI GAGTC 1 cut(s) 304
PpsI GAGTC 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 288
PspGI CCWGG 1 cut(s) 288
PspN4I GGNNCC 1 cut(s) 357
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 2 cut(s) 91, 221
SchI GAGTC 1 cut(s) 304
ScrFI CCNGG 1 cut(s) 290
SduI GDGCHC 1 cut(s) 360
SetI ASST 9 cut(s) 27, 40, 76, 139, 275, 368, 459, 466, 505
SfaNI GCATC 1 cut(s) 276
Sfr274I CTCGAG 1 cut(s) 301
SlaI CTCGAG 1 cut(s) 301
SmlI CTYRAG 2 cut(s) 217, 301
SmoI CTYRAG 2 cut(s) 217, 301
SphI GCATGC 1 cut(s) 182
Sse9I AATT 1 cut(s) 125
SsiI CCGC 1 cut(s) 407
SspMI CTAG 1 cut(s) 510
StyD4I CCNGG 1 cut(s) 288
StyI CCWWGG 1 cut(s) 457
TaqI TCGA 5 cut(s) 90, 96, 157, 302, 413
TasI AATT 1 cut(s) 125
TfiI GAWTC 1 cut(s) 337
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseFI GTSAC 2 cut(s) 283, 424
Tsp45I GTSAC 2 cut(s) 283, 424
TspDTI ATGAA 3 cut(s) 329, 392, 495
XapI RAATTY 1 cut(s) 125
XceI RCATGY 2 cut(s) 145, 182
XhoI CTCGAG 1 cut(s) 301
XspI CTAG 1 cut(s) 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.