Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Forward (+)

10247524 .. 10249340

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g11710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGGGGACGAGAAGGTGAAGGCAGAGGCTTTAGAGTTACTGGGAATGTTCCAAGCGCTTCCCAGATTGGTTGTCTTTGATCTTGATTACACTCTTTGGCCTTTCTATTGCGAATGTCGCTCCAAACGTGAAATGCCGTCATTGTATCCCCATGCTAGAGGCATATTGTACGCATTGAAGGAAAAGGGGATCGATCTTGCCATCGCTTCTAGGTCACCAACTGCAGATATAGCGAAGACATTTCTTGACAAATTAAGTATCAAGTCAATGTTTGTAGCTCAGGAGATCTTTTCAAGTTGGACACACAAGACCGATCATTTCCAGAAAATTCACTCGAGGACTGGTGTACCCTTTAATTCAATGCTTTTCTTTGATGATGAGAACAGGAACATTCAAGCGGTTTCAAAGATGGGTGTAACGAGCATGTTGGTAAACAAAGGAGTAACTGTTGGAGCATTGAGGCAAGGTCTTACAAAATACTCTGAAAATGTGAACATATTGGAAAGGAACAAGCAGAAATGGCGCACAAAGTTCTCCCAGAATTCAAATGTATCAGAGAAAAGTTCAAATTCATCAGAGAAGAATGAGAGTGAAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

201

Amino Acids

22.81

Weight (kDa)

8.98

Isoelectric Point (pI)

54.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	20 - 40	1.3e-06	Acid Phosphatase
HAD_2	PF13419	42 - 144	2.1e-09	Haloacid dehalogenase-like hydrolase
Acid_PPase	PF12689	47 - 162	3.5e-29	Acid Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	327, 541, 568
AfaI	GTAC	2 cut(s)	170, 348
AfeI	AGCGCT	1 cut(s)	57
AgsI	TTSAA	7 cut(s)	178, 294, 360, 395, 405, 546, 567
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	1 cut(s)	197
Ama87I	CYCGRG	1 cut(s)	334
Aor51HI	AGCGCT	1 cut(s)	57
AoxI	GGCC	1 cut(s)	98
ApoI	RAATTY	3 cut(s)	327, 541, 568
AspLEI	GCGC	2 cut(s)	58, 525
AsuHPI	GGTGA	2 cut(s)	28, 207
AvaI	CYCGRG	1 cut(s)	334
BaeI	ACNNNNGTAYC	2 cut(s)	330, 363
BbsI	GAAGAC	1 cut(s)	242
BccI	CCATC	2 cut(s)	209, 403
BceAI	ACGGC	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	156
BfaI	CTAG	2 cut(s)	156, 210
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	285
BmeT110I	CYCGRG	1 cut(s)	334
BmrI	ACTGGG	1 cut(s)	50
BmuI	ACTGGG	1 cut(s)	50
BpiI	GAAGAC	1 cut(s)	242
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bse1I	ACTGG	2 cut(s)	45, 346
BseCI	ATCGAT	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	45, 346
BshFI	GGCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	192
BsiHKCI	CYCGRG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	334
Bsp143I	GATC	5 cut(s)	79, 189, 193, 285, 313
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	192
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	197
BsrI	ACTGG	2 cut(s)	45, 346
BssMI	GATC	5 cut(s)	79, 189, 193, 285, 313
Bst4CI	ACNGT	1 cut(s)	448
BstDEI	CTNAG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	59
BstHHI	GCGC	2 cut(s)	58, 525
BstKTI	GATC	5 cut(s)	82, 192, 196, 288, 316
BstMBI	GATC	5 cut(s)	79, 189, 193, 285, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 230, 520
BstNSI	RCATGY	1 cut(s)	427
BstPI	GGTNACC	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	222
BstV2I	GAAGAC	1 cut(s)	242
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	192
BtgZI	GCGATG	1 cut(s)	187
CfoI	GCGC	2 cut(s)	58, 525
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	169, 347
CviAII	CATG	2 cut(s)	152, 424
CviJI	RGCY	3 cut(s)	29, 100, 278
CviKI_1	RGCY	3 cut(s)	29, 100, 278
CviQI	GTAC	2 cut(s)	169, 347
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	81, 191, 195, 287, 315
DpnII	GATC	5 cut(s)	79, 189, 193, 285, 313
Eco47III	AGCGCT	1 cut(s)	57
Eco88I	CYCGRG	1 cut(s)	334
Eco91I	GGTNACC	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	213
EcoRI	GAATTC	1 cut(s)	541
FaeI	CATG	2 cut(s)	155, 427
FaiI	YATR	5 cut(s)	153, 164, 230, 425, 497
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	151, 423
FspBI	CTAG	2 cut(s)	156, 210
GlaI	GCGC	2 cut(s)	57, 524
HaeII	RGCGCY	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	100
HhaI	GCGC	2 cut(s)	58, 525
Hin1II	CATG	2 cut(s)	155, 427
Hin6I	GCGC	2 cut(s)	56, 523
HinP1I	GCGC	2 cut(s)	56, 523
HphI	GGTGA	2 cut(s)	28, 207
Hpy166II	GTNNAC	3 cut(s)	347, 433, 493
Hpy188I	TCNGA	3 cut(s)	484, 556, 577
Hpy188III	TCNNGA	4 cut(s)	83, 245, 281, 322
Hpy8I	GTNNAC	3 cut(s)	347, 433, 493
HpyAV	CCTTC	3 cut(s)	7, 13, 172
HpyCH4III	ACNGT	1 cut(s)	448
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 230, 520
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	2 cut(s)	155, 427
HspAI	GCGC	2 cut(s)	56, 523
Kzo9I	GATC	5 cut(s)	79, 189, 193, 285, 313
LmnI	GCTCC	2 cut(s)	125, 452
LpnPI	CCDG	7 cut(s)	26, 76, 266, 327, 335, 370, 551
MaeI	CTAG	2 cut(s)	156, 210
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	4 cut(s)	36, 213, 415, 442
MalI	GATC	5 cut(s)	81, 191, 195, 287, 315
MboI	GATC	5 cut(s)	79, 189, 193, 285, 313
MboII	GAAGA	2 cut(s)	247, 592
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	6 cut(s)	251, 327, 355, 541, 568, 598
MmeI	TCCRAC	2 cut(s)	278, 430
MnlI	CCTC	4 cut(s)	19, 152, 330, 453
MseI	TTAA	2 cut(s)	254, 354
MwoI	GCNNNNNNNGC	3 cut(s)	117, 230, 520
NdeII	GATC	5 cut(s)	79, 189, 193, 285, 313
NlaIII	CATG	2 cut(s)	155, 427
NmuCI	GTSAC	1 cut(s)	213
NspI	RCATGY	1 cut(s)	427
PaeR7I	CTCGAG	1 cut(s)	334
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	213
PspXI	VCTCGAGB	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	2 cut(s)	170, 348
RsaNI	GTAC	2 cut(s)	169, 347
SaqAI	TTAA	2 cut(s)	254, 354
Sau3AI	GATC	5 cut(s)	79, 189, 193, 285, 313
SetI	ASST	5 cut(s)	18, 130, 215, 280, 469
SfcI	CTRYAG	1 cut(s)	222
Sfr274I	CTCGAG	1 cut(s)	334
SlaI	CTCGAG	1 cut(s)	334
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	6 cut(s)	251, 327, 355, 541, 568, 598
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	156, 210
TaaI	ACNGT	1 cut(s)	448
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	192, 335
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	6 cut(s)	251, 327, 355, 541, 568, 598
Tru1I	TTAA	2 cut(s)	254, 354
Tru9I	TTAA	2 cut(s)	254, 354
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	561
XapI	RAATTY	3 cut(s)	327, 541, 568
XceI	RCATGY	1 cut(s)	427
XhoI	CTCGAG	1 cut(s)	334
XspI	CTAG	2 cut(s)	156, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.