Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Reverse (-)

28758751 .. 28760617

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG177400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGGGACGAGAAGGTGAAGGCAGAGGCTTTAGAGTTACTGGGAATGTTCCAAGTGCTTCCCAGATTGGTTGTCTTCGATCTGGATTACACTCTGTGGCCTTTCTATTGCGAATGTCACTCCAAACGTGAAATGCCATGGTTGTATCCCCAGGCTAGAGGCATACTGTATGCATTGAAGGAAAGAGGGATCGATCTTGCCATTGCTTCCAGGTCACCAACTCCAGATATAGCAGAGACATTTCTTGACAAATTGAGCATCAAGTCAATGTTTGTAGCTCAGGAGATCTTTTCAAGTTGGACACACAAGACCGATCATTTCCGGAAAATTCAGTCAAGGACTGGGGTCCCCTTTAATTCAATGCTTTTCTTTGATGATGGGAACAGGAACATCCAAGCGGTTTCAAAGATGGGTGTAACGAGCATTTTGGTAAACGAAGGAGTAAATGTTAGAGCGTTGGAGCAAGGTCTTACAAAATACTCTGAAAATGTGAACATATCTGAAAAGAACAAGCAGAAATGGCGCACAAAGTTCTCCCAAAATTCAAATTCATCAAAGAAGAATGAGAGTGAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

193

Amino Acids

22.21

Weight (kDa)

8.78

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	20 - 43	1.6e-07	Acid Phosphatase
HAD_2	PF13419	44 - 144	1.6e-07	Haloacid dehalogenase-like hydrolase
Acid_PPase	PF12689	48 - 162	4e-28	Acid Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	321
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	327, 541, 547
AdeI	CACNNNGTG	1 cut(s)	96
AgsI	TTSAA	5 cut(s)	178, 294, 360, 405, 546
AjnI	CCWGG	2 cut(s)	150, 209
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	197
Aor13HI	TCCGGA	1 cut(s)	321
AoxI	GGCC	1 cut(s)	98
ApoI	RAATTY	3 cut(s)	327, 541, 547
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	28, 207
AvaII	GGWCC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	67
BccI	CCATC	2 cut(s)	371, 403
BciT130I	CCWGG	2 cut(s)	152, 211
BciVI	GTATCC	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	285
Bme1390I	CCNGG	2 cut(s)	152, 211
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	1 cut(s)	346
BmiI	GGNNCC	2 cut(s)	347, 348
BmrFI	CCNGG	2 cut(s)	152, 211
BmrI	ACTGGG	2 cut(s)	50, 351
BmsI	GCATC	1 cut(s)	267
BmuI	ACTGGG	2 cut(s)	50, 351
BoxI	GACNNNNGTC	1 cut(s)	344
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	137, 150
BsaWI	WCCGGW	1 cut(s)	321
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bse1I	ACTGG	2 cut(s)	45, 346
Bse3DI	GCAATG	1 cut(s)	201
BseAI	TCCGGA	1 cut(s)	321
BseBI	CCWGG	2 cut(s)	152, 211
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	2 cut(s)	137, 150
BseGI	GGATG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	45, 346
BshFI	GGCC	1 cut(s)	100
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	2 cut(s)	20, 332
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	2 cut(s)	20, 332
BsnI	GGCC	1 cut(s)	100
Bsp13I	TCCGGA	1 cut(s)	321
Bsp143I	GATC	5 cut(s)	79, 189, 193, 285, 313
Bsp19I	CCATGG	1 cut(s)	137
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	192
BspEI	TCCGGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	347, 348
BspPI	GGATC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	45, 346
BssECI	CCNNGG	2 cut(s)	137, 150
BssMI	GATC	5 cut(s)	79, 189, 193, 285, 313
BssT1I	CCWWGG	1 cut(s)	137
Bst2UI	CCWGG	2 cut(s)	152, 211
Bst4CI	ACNGT	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	137
BstEII	GGTNACC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	5 cut(s)	82, 192, 196, 288, 316
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	5 cut(s)	79, 189, 193, 285, 313
BstMWI	GCNNNNNNNGC	1 cut(s)	520
BstNI	CCWGG	2 cut(s)	152, 211
BstPAI	GACNNNNGTC	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	150, 209
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	192
BtgI	CCRYGG	1 cut(s)	137
BtsCI	GGATG	1 cut(s)	390
CfoI	GCGC	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	346
ClaI	ATCGAT	1 cut(s)	192
CviAII	CATG	1 cut(s)	138
CviJI	RGCY	4 cut(s)	29, 100, 155, 278
CviKI_1	RGCY	4 cut(s)	29, 100, 155, 278
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	81, 191, 195, 287, 315
DpnII	GATC	5 cut(s)	79, 189, 193, 285, 313
DraIII	CACNNNGTG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	137
Eco47I	GGWCC	1 cut(s)	346
Eco91I	GGTNACC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	213
EcoRII	CCWGG	2 cut(s)	150, 209
EcoT14I	CCWWGG	1 cut(s)	137
EcoT22I	ATGCAT	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	137
FaeI	CATG	1 cut(s)	141
FaiI	YATR	5 cut(s)	139, 164, 171, 230, 497
FaqI	GGGAC	2 cut(s)	20, 332
FatI	CATG	1 cut(s)	137
FokI	GGATG	1 cut(s)	377
FspBI	CTAG	1 cut(s)	156
GlaI	GCGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	322
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	1 cut(s)	141
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	2 cut(s)	28, 207
Hpy166II	GTNNAC	2 cut(s)	433, 493
Hpy188I	TCNGA	2 cut(s)	484, 502
Hpy188III	TCNNGA	5 cut(s)	83, 224, 245, 281, 322
Hpy8I	GTNNAC	2 cut(s)	433, 493
HpyAV	CCTTC	4 cut(s)	7, 13, 172, 431
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	520
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	141
HspAI	GCGC	1 cut(s)	523
KflI	GGGWCCC	1 cut(s)	346
Kpn2I	TCCGGA	1 cut(s)	321
Kzo9I	GATC	5 cut(s)	79, 189, 193, 285, 313
LmnI	GCTCC	1 cut(s)	460
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	156
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	4 cut(s)	36, 116, 213, 415
MalI	GATC	5 cut(s)	81, 191, 195, 287, 315
MboI	GATC	5 cut(s)	79, 189, 193, 285, 313
MboII	GAAGA	2 cut(s)	67, 571
MflI	RGATCY	1 cut(s)	285
MluCI	AATT	5 cut(s)	251, 327, 355, 541, 547
MmeI	TCCRAC	2 cut(s)	278, 438
MnlI	CCTC	3 cut(s)	19, 152, 179
Mph1103I	ATGCAT	1 cut(s)	175
MroI	TCCGGA	1 cut(s)	321
MseI	TTAA	1 cut(s)	354
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	2 cut(s)	152, 211
MvaI	CCWGG	2 cut(s)	152, 211
MwoI	GCNNNNNNNGC	1 cut(s)	520
NcoI	CCATGG	1 cut(s)	137
NdeII	GATC	5 cut(s)	79, 189, 193, 285, 313
NlaIII	CATG	1 cut(s)	141
NlaIV	GGNNCC	2 cut(s)	347, 348
NmuCI	GTSAC	2 cut(s)	116, 213
NsiI	ATGCAT	1 cut(s)	175
PpuMI	RGGWCCY	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	2 cut(s)	150, 209
PspEI	GGTNACC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	150, 209
PspN4I	GGNNCC	2 cut(s)	347, 348
PspPI	GGNCC	1 cut(s)	346
PspPPI	RGGWCCY	1 cut(s)	346
PsuI	RGATCY	1 cut(s)	285
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	79, 189, 193, 285, 313
Sau96I	GGNCC	1 cut(s)	346
ScrFI	CCNGG	2 cut(s)	152, 211
SetI	ASST	5 cut(s)	18, 130, 215, 280, 469
SfaNI	GCATC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	5 cut(s)	251, 327, 355, 541, 547
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	1 cut(s)	156
StyD4I	CCNGG	2 cut(s)	150, 209
StyI	CCWWGG	1 cut(s)	137
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	78, 192
TaqII	GACCGA	1 cut(s)	326
TasI	AATT	5 cut(s)	251, 327, 355, 541, 547
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	116, 213
Tsp45I	GTSAC	2 cut(s)	116, 213
TspDTI	ATGAA	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	3 cut(s)	327, 541, 547
XspI	CTAG	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.