RLG00000017874

Magnesium-dependent phosphatase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
22516654 .. 22517513
860 bp
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UTR
Exon/CDS
Intron
RLM00000017874

Sequence Viewer

Length: 519 bp
ATGGGAGACGACAACGAGAAGGTGAGGAACAACGCTGTCCAGATAATCACAAAACACAGCCAGAACTTACCTTGTCTCGTCGTCTTCGATCTCGACTACACTCTCTGGCCTTTCTACTGCAAATTTGAAGATGGCACGCCGTATCTTTATTCAGAAGCCTTGCCGATATTGCAAGCTCTCAGAGAAAAGGGAATACCAATGGCCGTGGCCTCAAGATCCCCAACTCCCGATGTAGCCAAATCGTTCCTTCAAACTTTGGGCATCAGCTCATTGTTTGTGACCCAGGAGATTTTCCGGAGCAAGACTCGCAAAACAGTCCATTTTGAGAAGATTCGTGCAACAACTGGGGTGCCCTTTACCTCAATGCTATTCTTTGATGATGAGGATAGGAATATTCATGCGGTATCGAAAATGGGGGTGACAAGCATTTTAGTTGGTGATGGGGTGAACCTTGGAGCTTTGGAGCAGGGATTGTCTGAGTTTTCAAGAAAGTCAGCTTCGTCTAGCAGGAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

173

Amino Acids

19.2

Weight (kDa)

7.78

Isoelectric Point (pI)

53.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_PPase PF12689 23 - 47 8.4e-06 Acid Phosphatase
Hydrolase PF00702 46 - 134 4.3e-06 haloacid dehalogenase-like hydrolase
HAD_2 PF13419 46 - 145 5.4e-06 Haloacid dehalogenase-like hydrolase
Acid_PPase PF12689 49 - 163 1.8e-27 Acid Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 349
AccIII TCCGGA 1 cut(s) 294
AciI CCGC 1 cut(s) 401
AclWI GGATC 1 cut(s) 210
AcoI YGGCCR 1 cut(s) 201
AcsI RAATTY 1 cut(s) 122
AgsI TTSAA 3 cut(s) 128, 251, 486
AjnI CCWGG 1 cut(s) 282
AluBI AGCT 4 cut(s) 176, 267, 458, 497
AluI AGCT 4 cut(s) 176, 267, 458, 497
Alw26I GTCTC 1 cut(s) 80
AlwI GGATC 1 cut(s) 210
Aor13HI TCCGGA 1 cut(s) 294
AoxI GGCC 3 cut(s) 107, 201, 207
ApoI RAATTY 1 cut(s) 122
AsuHPI GGTGA 4 cut(s) 34, 430, 449, 457
BaeGI GKGCMC 1 cut(s) 354
BanI GGYRCC 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 76
BccI CCATC 2 cut(s) 125, 434
BceAI ACGGC 2 cut(s) 124, 188
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 504
Bme1390I CCNGG 1 cut(s) 284
BmiI GGNNCC 1 cut(s) 351
BmrFI CCNGG 1 cut(s) 284
BmrI ACTGGG 1 cut(s) 354
BmsI GCATC 1 cut(s) 270
BmuI ACTGGG 1 cut(s) 354
BpiI GAAGAC 1 cut(s) 76
BplI GAGNNNNNCTC 2 cut(s) 289, 321
BpuEI CTTGAG 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 204, 282, 451
BsaWI WCCGGW 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 349
BseAI TCCGGA 1 cut(s) 294
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 3 cut(s) 204, 282, 451
BseMII CTCAG 2 cut(s) 193, 468
BseNI ACTGG 1 cut(s) 349
BseSI GKGCMC 1 cut(s) 354
BshFI GGCC 3 cut(s) 109, 203, 209
BshNI GGYRCC 1 cut(s) 349
BsiSI CCGG 1 cut(s) 295
BsmAI GTCTC 1 cut(s) 80
BsnI GGCC 3 cut(s) 109, 203, 209
Bsp1286I GDGCHC 1 cut(s) 354
Bsp13I TCCGGA 1 cut(s) 294
Bsp143I GATC 2 cut(s) 88, 215
BspACI CCGC 1 cut(s) 401
BspANI GGCC 3 cut(s) 109, 203, 209
BspCNI CTCAG 2 cut(s) 192, 469
BspEI TCCGGA 1 cut(s) 294
BspLI GGNNCC 1 cut(s) 351
BspPI GGATC 1 cut(s) 210
BspT107I GGYRCC 1 cut(s) 349
BsrI ACTGG 1 cut(s) 349
BssECI CCNNGG 3 cut(s) 204, 282, 451
BssMI GATC 2 cut(s) 88, 215
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 316
BstC8I GCNNGC 2 cut(s) 137, 174
BstDEI CTNAG 2 cut(s) 179, 477
BstDSI CCRYGG 1 cut(s) 204
BstKTI GATC 2 cut(s) 91, 218
BstMAI GTCTC 1 cut(s) 80
BstMBI GATC 2 cut(s) 88, 215
BstMWI GCNNNNNNNGC 2 cut(s) 169, 306
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 354
BstV2I GAAGAC 1 cut(s) 76
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BsuRI GGCC 3 cut(s) 109, 203, 209
BtgI CCRYGG 1 cut(s) 204
Cac8I GCNNGC 2 cut(s) 137, 174
CspCI CAANNNNNGTGG 2 cut(s) 186, 221
CviAII CATG 1 cut(s) 398
DdeI CTNAG 2 cut(s) 179, 477
DpnI GATC 2 cut(s) 90, 217
DpnII GATC 2 cut(s) 88, 215
EaeI YGGCCR 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 451
EcoRII CCWGG 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 451
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 1 cut(s) 401
FaiI YATR 1 cut(s) 399
FatI CATG 1 cut(s) 397
FspBI CTAG 1 cut(s) 504
HaeIII GGCC 3 cut(s) 109, 203, 209
HapII CCGG 1 cut(s) 295
Hin1II CATG 1 cut(s) 401
HinfI GANTC 2 cut(s) 304, 331
HpaII CCGG 1 cut(s) 295
HphI GGTGA 4 cut(s) 34, 430, 449, 457
Hpy166II GTNNAC 1 cut(s) 448
Hpy188I TCNGA 3 cut(s) 154, 182, 478
Hpy188III TCNNGA 6 cut(s) 40, 92, 213, 227, 295, 486
Hpy8I GTNNAC 1 cut(s) 448
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 2 cut(s) 13, 257
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4V TGCA 3 cut(s) 120, 172, 338
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 306
HpyF3I CTNAG 2 cut(s) 179, 477
Hsp92II CATG 1 cut(s) 401
Kpn2I TCCGGA 1 cut(s) 294
Kzo9I GATC 2 cut(s) 88, 215
LmnI GCTCC 3 cut(s) 297, 455, 463
LpnPI CCDG 9 cut(s) 53, 74, 91, 269, 296, 308, 330, 452, 493
LweI GCATC 1 cut(s) 270
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 2 cut(s) 277, 418
MalI GATC 2 cut(s) 90, 217
MboI GATC 2 cut(s) 88, 215
MboII GAAGA 3 cut(s) 76, 140, 340
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 1 cut(s) 122
MlyI GAGTC 1 cut(s) 298
MnlI CCTC 5 cut(s) 18, 220, 370, 376, 504
MroI TCCGGA 1 cut(s) 294
MspI CCGG 1 cut(s) 295
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 2 cut(s) 169, 306
NdeII GATC 2 cut(s) 88, 215
NlaIII CATG 1 cut(s) 401
NlaIV GGNNCC 1 cut(s) 351
NmuCI GTSAC 2 cut(s) 277, 418
PcsI WCGNNNNNNNCGW 1 cut(s) 84
PfeI GAWTC 1 cut(s) 331
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 351
PsuI RGATCY 1 cut(s) 215
Sau3AI GATC 2 cut(s) 88, 215
SchI GAGTC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 354
SetI ASST 8 cut(s) 24, 73, 178, 269, 362, 453, 460, 499
SfaNI GCATC 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 211
SmoI CTYRAG 1 cut(s) 211
Sse9I AATT 1 cut(s) 122
SsiI CCGC 1 cut(s) 401
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 504
StyD4I CCNGG 1 cut(s) 282
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 1 cut(s) 316
TaqI TCGA 3 cut(s) 87, 93, 407
TasI AATT 1 cut(s) 122
TfiI GAWTC 1 cut(s) 331
TseFI GTSAC 2 cut(s) 277, 418
Tsp45I GTSAC 2 cut(s) 277, 418
TspDTI ATGAA 1 cut(s) 386
XapI RAATTY 1 cut(s) 122
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.