Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Reverse (-)

35379592 .. 35382087

Gene Structure 2496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG339100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCCATCATTGTATCCCCAGGCTAGAGGCATACTGTATGCATTGAAGGAAAGAGGGATCGATCTTGCCATTGCTTCCAGGTCACCAGCTCCAGATATAGCAAAGACATTTCTTGACAAATTGAGCATCAAGTCAATGTTTGTAGCTCAGGAGATCTTTTCAAGTTGGACACACAAGACCGATCATTTCCAAAAAATTCACTCAAGGACTGGGGTCCCCTTTAATTCAATGCTTTTCTTTGATGATGAGAACAGGAACATCCAAGCGGTTTCAAAGATGGGTGTAACGAGCATTTTGGTAAACAAAGGAGTAAATGTTGGAGCGTTGAGGCAAGGTCTTACAAAATACTCTGAAAATGTGAACATATCTGAAAAGAACAAGCAGAAATGGCGCACAAAGTTCTCCCAAAGTTCAAATTCATCAAAGAAGAATGAGAGTGAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

149

Amino Acids

16.83

Weight (kDa)

9.86

Isoelectric Point (pI)

60.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	3 - 118	8.5e-30	Acid Phosphatase
HAD_2	PF13419	3 - 100	6.5e-08	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	266
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	195, 415
AgsI	TTSAA	5 cut(s)	46, 162, 228, 273, 414
AjnI	CCWGG	2 cut(s)	18, 77
AluBI	AGCT	2 cut(s)	89, 146
AluI	AGCT	2 cut(s)	89, 146
AlwI	GGATC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	195, 415
AspLEI	GCGC	1 cut(s)	393
AspS9I	GGNCC	1 cut(s)	214
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	214
BccI	CCATC	2 cut(s)	13, 271
BciT130I	CCWGG	2 cut(s)	20, 79
BciVI	GTATCC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	24
BglII	AGATCT	1 cut(s)	153
Bme1390I	CCNGG	2 cut(s)	20, 79
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	2 cut(s)	215, 216
BmrFI	CCNGG	2 cut(s)	20, 79
BmrI	ACTGGG	1 cut(s)	219
BmsI	GCATC	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	219
BoxI	GACNNNNGTC	1 cut(s)	212
BpmI	CTGGAG	1 cut(s)	75
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	187
Bsa29I	ATCGAT	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bse1I	ACTGG	1 cut(s)	214
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	20, 79
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	258
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	214
BshVI	ATCGAT	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	200
BsmFI	GGGAC	1 cut(s)	200
Bsp143I	GATC	4 cut(s)	57, 61, 153, 181
BspACI	CCGC	1 cut(s)	266
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	215, 216
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	4 cut(s)	57, 61, 153, 181
Bst2UI	CCWGG	2 cut(s)	20, 79
Bst4CI	ACNGT	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	258
BstHHI	GCGC	1 cut(s)	393
BstKTI	GATC	4 cut(s)	60, 64, 156, 184
BstMBI	GATC	4 cut(s)	57, 61, 153, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	388
BstNI	CCWGG	2 cut(s)	20, 79
BstPAI	GACNNNNGTC	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	18, 77
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
Bsu15I	ATCGAT	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	258
CfoI	GCGC	1 cut(s)	393
Cfr13I	GGNCC	1 cut(s)	214
ClaI	ATCGAT	1 cut(s)	60
CviJI	RGCY	3 cut(s)	23, 89, 146
CviKI_1	RGCY	3 cut(s)	23, 89, 146
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	4 cut(s)	59, 63, 155, 183
DpnII	GATC	4 cut(s)	57, 61, 153, 181
Eco47I	GGWCC	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	18, 77
EcoT22I	ATGCAT	1 cut(s)	43
FaiI	YATR	4 cut(s)	32, 39, 98, 365
FaqI	GGGAC	1 cut(s)	200
FokI	GGATG	1 cut(s)	245
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	392
GsuI	CTGGAG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	393
Hin6I	GCGC	1 cut(s)	391
HinP1I	GCGC	1 cut(s)	391
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	301, 361
Hpy188I	TCNGA	2 cut(s)	352, 370
Hpy188III	TCNNGA	3 cut(s)	92, 113, 149
Hpy8I	GTNNAC	2 cut(s)	301, 361
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	1 cut(s)	388
HpyF3I	CTNAG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	391
KflI	GGGWCCC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	57, 61, 153, 181
LmnI	GCTCC	2 cut(s)	94, 320
LpnPI	CCDG	9 cut(s)	5, 32, 64, 91, 99, 105, 134, 195, 238
LweI	GCATC	1 cut(s)	135
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	81, 283
MalI	GATC	4 cut(s)	59, 63, 155, 183
MboI	GATC	4 cut(s)	57, 61, 153, 181
MboII	GAAGA	1 cut(s)	439
MflI	RGATCY	1 cut(s)	153
MluCI	AATT	4 cut(s)	119, 195, 223, 415
MmeI	TCCRAC	2 cut(s)	146, 298
MnlI	CCTC	3 cut(s)	20, 47, 321
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	1 cut(s)	222
MspR9I	CCNGG	2 cut(s)	20, 79
MvaI	CCWGG	2 cut(s)	20, 79
MwoI	GCNNNNNNNGC	1 cut(s)	388
NdeII	GATC	4 cut(s)	57, 61, 153, 181
NlaIV	GGNNCC	2 cut(s)	215, 216
NmuCI	GTSAC	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	214
PshAI	GACNNNNGTC	1 cut(s)	212
Psp5II	RGGWCCY	1 cut(s)	214
Psp6I	CCWGG	2 cut(s)	18, 77
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	18, 77
PspN4I	GGNNCC	2 cut(s)	215, 216
PspPI	GGNCC	1 cut(s)	214
PspPPI	RGGWCCY	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	153
SaqAI	TTAA	1 cut(s)	222
Sau3AI	GATC	4 cut(s)	57, 61, 153, 181
Sau96I	GGNCC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	20, 79
SetI	ASST	4 cut(s)	83, 91, 148, 337
SfaNI	GCATC	1 cut(s)	135
SinI	GGWCC	1 cut(s)	214
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
Sse9I	AATT	4 cut(s)	119, 195, 223, 415
SsiI	CCGC	1 cut(s)	266
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	18, 77
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	4 cut(s)	119, 195, 223, 415
Tru1I	TTAA	1 cut(s)	222
Tru9I	TTAA	1 cut(s)	222
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	408
VpaK11BI	GGWCC	1 cut(s)	214
XapI	RAATTY	2 cut(s)	195, 415
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.