Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Forward (+)

18241530 .. 18244828

Gene Structure 3299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0207000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGTATATTGAGGAGTTGAAAGGTGGGGAAGGTGGAGAAGAAGTGGATTTAGGGCATGGAAGGGGCATCGTGGGGTCGGATGCGAAACGGGTCTTGATCGGCGCAGGGGCTCGTGCGCTGTTTTACCCGACTCTGCTTTACAATGTCATCAGGAATAAGCTTGAGGCTGAGTTTCGCTGGTGGGATAAGGTCGATGAGTTTGTATTGTTAGGTGCAGTTCCATTCCCAACTGATGTGCCTCGCTTGAAGGAGGTCGGAGTTCGTGGAGTCATCACACTTAATGAGCCATATGAGACTTTGGTTCCAACATCTCTTTATCAGTCCAATGGCATTAGCCATCTGGTGATACCTACCAGAGACTACTGCTTTGCACCATCGCTGAATGATATATGTCGTGCTGTAAACTTCATTAATGAAAATGCATCAAGTGGGACGACAACATATGTTCACTGTAAAGCTGGACGGGGCCGTAGTACGACCATTGTTATCTGCTACTTGGTCCATCACAAGCAGATGACACCTGATTCTGCCTATGAATATCTGAAGTCAATTCGGCCACGTGTGCTTTTGGCCTCTGCTCAGTGGCAGGCTGTTCAGGAGTACTACTATTTCATGGTGAAGAAAGCTGTGGTTTACAGCCACTTGACTAATCTAATATTGAATCCCCCATGTTCAGCTCCCTCACATGATCTCCTTGCATTTGACGAGGGCTCTGTAGTAGTGGTCACTGAATCAGATCTTGAAGGATATGATGCAAATCTCCAGTCTGGTACTGTGAGAAATGAGATTTGGGCTGACTTAAGTGTGGTCTATCGGGTTCGAGTAGCTGGTCAGGCAGCTCTCACAAGGATTTCATGCCTGTGGCTCCGTTGCCATGCCCACCAGGAGAGTTCAGCTAAGAAGTTGGGCAGGGAAAGCAGCTGCTCGATTACAGCTGATCATCTGGGAGGCATTAGCGTGGACATACAAGTTTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

325

Amino Acids

36.06

Weight (kDa)

6.21

Isoelectric Point (pI)

34.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTP-SAK	PF22784	77 - 177	2.7e-14	Swiss Army Knife protein, DSP-PTPase phosphatase domain
Tc-R-P	PF22785	80 - 170	8.5e-14	Polymorphic toxin system, DSP-PTPase phosphatase
DSPc	PF00782	100 - 202	3.6e-18	Dual specificity phosphatase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	554
AcuI	CTGAAG	1 cut(s)	563
AcvI	CACGTG	1 cut(s)	560
AfaI	GTAC	3 cut(s)	475, 602, 772
AflII	CTTAAG	1 cut(s)	799
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	4 cut(s)	19, 247, 661, 743
AjnI	CCWGG	1 cut(s)	882
AjuI	GAANNNNNNNTTGG	2 cut(s)	772, 804
AluBI	AGCT	9 cut(s)	160, 458, 626, 677, 827, 839, 896, 921, 935
AluI	AGCT	9 cut(s)	160, 458, 626, 677, 827, 839, 896, 921, 935
Alw26I	GTCTC	2 cut(s)	287, 351
AoxI	GGCC	3 cut(s)	466, 554, 570
ApeKI	GCWGC	3 cut(s)	836, 918, 921
ArsI	GACNNNNNNTTYG	4 cut(s)	350, 382, 749, 781
AseI	ATTAAT	1 cut(s)	411
AspLEI	GCGC	2 cut(s)	104, 118
AspS9I	GGNCC	2 cut(s)	466, 499
AsuHPI	GGTGA	2 cut(s)	355, 628
AvaII	GGWCC	1 cut(s)	499
BanII	GRGCYC	2 cut(s)	112, 713
BauI	CACGAG	1 cut(s)	111
BbrPI	CACGTG	1 cut(s)	560
BbvI	GCAGC	3 cut(s)	848, 908, 930
BccI	CCATC	3 cut(s)	345, 382, 510
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	884
BclI	TGATCA	1 cut(s)	937
BcoDI	GTCTC	2 cut(s)	287, 351
BfmI	CTRYAG	1 cut(s)	714
BfrI	CTTAAG	1 cut(s)	799
BglII	AGATCT	1 cut(s)	736
BisI	GCNGC	3 cut(s)	837, 919, 922
BlsI	GCNGC	3 cut(s)	838, 920, 923
BmcAI	AGTACT	1 cut(s)	602
Bme1390I	CCNGG	1 cut(s)	884
Bme18I	GGWCC	1 cut(s)	499
BmgT120I	GGNCC	2 cut(s)	466, 499
BmiI	GGNNCC	3 cut(s)	303, 467, 866
BmrFI	CCNGG	1 cut(s)	884
BmsI	GCATC	4 cut(s)	70, 75, 431, 742
BpmI	CTGGAG	1 cut(s)	746
BpuEI	CTTGAG	1 cut(s)	182
BsaAI	YACGTR	1 cut(s)	560
BsaBI	GATNNNNATC	1 cut(s)	756
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 57, 675, 705
Bse1I	ACTGG	1 cut(s)	763
Bse8I	GATNNNNATC	1 cut(s)	756
BseBI	CCWGG	1 cut(s)	884
BseGI	GGATG	1 cut(s)	85
BseJI	GATNNNNATC	1 cut(s)	756
BseMII	CTCAG	2 cut(s)	159, 593
BseNI	ACTGG	1 cut(s)	763
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	3 cut(s)	848, 908, 930
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	3 cut(s)	468, 556, 572
BslFI	GGGAC	1 cut(s)	445
BsmAI	GTCTC	2 cut(s)	287, 351
BsmFI	GGGAC	1 cut(s)	445
BsnI	GGCC	3 cut(s)	468, 556, 572
Bsp1286I	GDGCHC	2 cut(s)	112, 713
Bsp143I	GATC	4 cut(s)	96, 688, 736, 937
BspANI	GGCC	3 cut(s)	468, 556, 572
BspCNI	CTCAG	2 cut(s)	160, 592
BspLI	GGNNCC	3 cut(s)	303, 467, 866
BspTI	CTTAAG	1 cut(s)	799
BsrI	ACTGG	1 cut(s)	763
BssMI	GATC	4 cut(s)	96, 688, 736, 937
BssSI	CACGAG	1 cut(s)	111
Bst2BI	CACGAG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	884
Bst4CI	ACNGT	2 cut(s)	452, 775
BstAFI	CTTAAG	1 cut(s)	799
BstBAI	YACGTR	1 cut(s)	560
BstC8I	GCNNGC	1 cut(s)	588
BstDEI	CTNAG	3 cut(s)	168, 579, 897
BstF5I	GGATG	1 cut(s)	85
BstHHI	GCGC	2 cut(s)	104, 118
BstKTI	GATC	4 cut(s)	99, 691, 739, 940
BstMAI	GTCTC	2 cut(s)	287, 351
BstMBI	GATC	4 cut(s)	96, 688, 736, 937
BstMWI	GCNNNNNNNGC	3 cut(s)	562, 833, 915
BstNI	CCWGG	1 cut(s)	884
BstSCI	CCNGG	1 cut(s)	882
BstSFI	CTRYAG	1 cut(s)	714
BstV1I	GCAGC	3 cut(s)	848, 908, 930
BstX2I	RGATCY	1 cut(s)	736
BstYI	RGATCY	1 cut(s)	736
BsuRI	GGCC	3 cut(s)	468, 556, 572
BtgZI	GCGATG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	3 cut(s)	448, 587, 726
Cac8I	GCNNGC	1 cut(s)	588
CfoI	GCGC	2 cut(s)	104, 118
Cfr13I	GGNCC	2 cut(s)	466, 499
Csp6I	GTAC	3 cut(s)	474, 601, 771
CviAII	CATG	6 cut(s)	56, 613, 669, 686, 855, 875
CviQI	GTAC	3 cut(s)	474, 601, 771
DdeI	CTNAG	3 cut(s)	168, 579, 897
DpnI	GATC	4 cut(s)	98, 690, 738, 939
DpnII	GATC	4 cut(s)	96, 688, 736, 937
EaeI	YGGCCR	1 cut(s)	554
Eco24I	GRGCYC	2 cut(s)	112, 713
Eco47I	GGWCC	1 cut(s)	499
Eco57I	CTGAAG	1 cut(s)	563
Eco72I	CACGTG	1 cut(s)	560
EcoRII	CCWGG	1 cut(s)	882
EcoT22I	ATGCAT	1 cut(s)	424
EcoT38I	GRGCYC	2 cut(s)	112, 713
FaeI	CATG	6 cut(s)	59, 616, 672, 689, 858, 878
FaqI	GGGAC	1 cut(s)	445
FatI	CATG	6 cut(s)	55, 612, 668, 685, 854, 874
FauNDI	CATATG	2 cut(s)	289, 442
FbaI	TGATCA	1 cut(s)	937
Fnu4HI	GCNGC	3 cut(s)	837, 919, 922
FokI	GGATG	1 cut(s)	92
FriOI	GRGCYC	2 cut(s)	112, 713
Fsp4HI	GCNGC	3 cut(s)	837, 919, 922
GlaI	GCGC	2 cut(s)	103, 117
GluI	GCNGC	3 cut(s)	837, 919, 922
GsuI	CTGGAG	1 cut(s)	746
HaeIII	GGCC	3 cut(s)	468, 556, 572
HhaI	GCGC	2 cut(s)	104, 118
Hin1II	CATG	6 cut(s)	59, 616, 672, 689, 858, 878
Hin6I	GCGC	2 cut(s)	102, 116
HinP1I	GCGC	2 cut(s)	102, 116
HindIII	AAGCTT	1 cut(s)	158
HinfI	GANTC	5 cut(s)	130, 267, 524, 661, 731
HphI	GGTGA	2 cut(s)	355, 628
Hpy166II	GTNNAC	5 cut(s)	403, 448, 634, 961, 973
Hpy188I	TCNGA	4 cut(s)	79, 257, 543, 736
Hpy188III	TCNNGA	4 cut(s)	94, 151, 596, 740
Hpy8I	GTNNAC	5 cut(s)	403, 448, 634, 961, 973
HpyAV	CCTTC	4 cut(s)	23, 54, 241, 737
HpyCH4III	ACNGT	2 cut(s)	452, 775
HpyCH4IV	ACGT	1 cut(s)	559
HpyCH4V	TGCA	5 cut(s)	215, 371, 422, 698, 755
HpyF10VI	GCNNNNNNNGC	3 cut(s)	562, 833, 915
HpyF3I	CTNAG	3 cut(s)	168, 579, 897
HpySE526I	ACGT	1 cut(s)	559
Hsp92II	CATG	6 cut(s)	59, 616, 672, 689, 858, 878
HspAI	GCGC	2 cut(s)	102, 116
Ksp22I	TGATCA	1 cut(s)	937
Kzo9I	GATC	4 cut(s)	96, 688, 736, 937
LmnI	GCTCC	2 cut(s)	682, 870
Lsp1109I	GCAGC	3 cut(s)	848, 908, 930
LweI	GCATC	4 cut(s)	70, 75, 431, 742
MaeII	ACGT	1 cut(s)	559
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	4 cut(s)	98, 690, 738, 939
MboI	GATC	4 cut(s)	96, 688, 736, 937
MboII	GAAGA	2 cut(s)	50, 631
MflI	RGATCY	1 cut(s)	736
MhlI	GDGCHC	2 cut(s)	112, 713
MluCI	AATT	1 cut(s)	549
MlyI	GAGTC	2 cut(s)	124, 276
MmeI	TCCRAC	3 cut(s)	57, 235, 329
MnlI	CCTC	8 cut(s)	4, 157, 244, 249, 583, 691, 700, 941
Mph1103I	ATGCAT	1 cut(s)	424
MseI	TTAA	3 cut(s)	279, 411, 800
MslI	CAYNNNNRTG	2 cut(s)	859, 956
MspA1I	CMGCKG	2 cut(s)	921, 935
MspCI	CTTAAG	1 cut(s)	799
MspR9I	CCNGG	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	884
MwoI	GCNNNNNNNGC	3 cut(s)	562, 833, 915
NdeI	CATATG	2 cut(s)	289, 442
NdeII	GATC	4 cut(s)	96, 688, 736, 937
NlaIII	CATG	6 cut(s)	59, 616, 672, 689, 858, 878
NlaIV	GGNNCC	3 cut(s)	303, 467, 866
NmuCI	GTSAC	1 cut(s)	724
NsiI	ATGCAT	1 cut(s)	424
PfeI	GAWTC	3 cut(s)	524, 661, 731
PkrI	GCNGC	3 cut(s)	838, 920, 923
PleI	GAGTC	2 cut(s)	124, 275
PmaCI	CACGTG	1 cut(s)	560
PmlI	CACGTG	1 cut(s)	560
PpsI	GAGTC	2 cut(s)	124, 275
Ppu21I	YACGTR	1 cut(s)	560
PshBI	ATTAAT	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	882
PspCI	CACGTG	1 cut(s)	560
PspGI	CCWGG	1 cut(s)	882
PspN4I	GGNNCC	3 cut(s)	303, 467, 866
PspPI	GGNCC	2 cut(s)	466, 499
PsuI	RGATCY	1 cut(s)	736
PvuII	CAGCTG	2 cut(s)	921, 935
RsaI	GTAC	3 cut(s)	475, 602, 772
RsaNI	GTAC	3 cut(s)	474, 601, 771
RseI	CAYNNNNRTG	2 cut(s)	859, 956
SaqAI	TTAA	3 cut(s)	279, 411, 800
SatI	GCNGC	3 cut(s)	837, 919, 922
Sau3AI	GATC	4 cut(s)	96, 688, 736, 937
Sau96I	GGNCC	2 cut(s)	466, 499
ScaI	AGTACT	1 cut(s)	602
SchI	GAGTC	2 cut(s)	124, 276
ScrFI	CCNGG	1 cut(s)	884
SduI	GDGCHC	2 cut(s)	112, 713
SfaNI	GCATC	4 cut(s)	70, 75, 431, 742
SfcI	CTRYAG	1 cut(s)	714
SinI	GGWCC	1 cut(s)	499
SmiMI	CAYNNNNRTG	2 cut(s)	859, 956
SmlI	CTYRAG	2 cut(s)	161, 799
SmoI	CTYRAG	2 cut(s)	161, 799
Sse9I	AATT	1 cut(s)	549
SspI	AATATT	1 cut(s)	657
StyD4I	CCNGG	1 cut(s)	882
TaaI	ACNGT	2 cut(s)	452, 775
TaiI	ACGT	1 cut(s)	562
TaqI	TCGA	3 cut(s)	192, 820, 926
TasI	AATT	1 cut(s)	549
TatI	WGTACW	1 cut(s)	600
TfiI	GAWTC	3 cut(s)	524, 661, 731
Tru1I	TTAA	3 cut(s)	279, 411, 800
Tru9I	TTAA	3 cut(s)	279, 411, 800
TscAI	CASTG	3 cut(s)	455, 587, 733
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	3 cut(s)	836, 918, 921
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	5 cut(s)	397, 429, 549, 601, 843
TspGWI	ACGGA	1 cut(s)	857
TspRI	CASTG	3 cut(s)	455, 587, 733
Vha464I	CTTAAG	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	499
VspI	ATTAAT	1 cut(s)	411
ZrmI	AGTACT	1 cut(s)	602
Zsp2I	ATGCAT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.