pycom05g03940

Magnesium-dependent phosphatase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
4520535 .. 4522878
2344 bp
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UTR
Exon/CDS
Intron
pycom05g03940.4

Sequence Viewer

Length: 642 bp
ATGACGTATTGCCTAATTCATCCAAGAACGCAGGCAAATTGGAAACTTTGTATCAGAGAGAGAATGGGTGACGATAAGGTGAAGGCAGATGCTTTGGAGATATTGGGAATGTTCCAAGTGCTTCCGCTATTGGTTGTCTTCGATCTTGATTACACTCTCTGGCCTTTCTATTGTGAATGTCGCTCCAAACGTGAGATGCCATCGATGTATCCCCATGCTAGAGGAATATTGTATGCACTGAAAGAAAAAGGAATTGGCCTTGCCATTGCTTCTAGGTCACCAACTGCGGATACAGCAAAGACTTTTATCGAAAAATTGAGTGTCAAGTCAATGTTCGCAGCCCAGGAGATTTTTTCGAGTTGGACGCACAAGACAGACCATTTTCAGCGAATTCATACAAGGACCGGGGTCCCCTTCAACTCGATGCTTTTCTTTGATGACGAAAATAGGAACATCCAAGCGGTTTCAAAGATGGGCGTAACAAGCATTTTGGTGGATAATGGGGTAAACATTGGAGCGTTGAGGCAGGGTCTTACAAAATACACCGAAAATGTGAATACATCTGAGAAGAACAAGCAGAAATGGCGCACAAAGTTCTCCAAAAGTTCAAGTTCGTCTGAGAAGAACGCGGAGAATTCATAG
Functional Annotation

Protein Analysis

214

Amino Acids

24.33

Weight (kDa)

9.33

Isoelectric Point (pI)

50.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 629
AciI CCGC 4 cut(s) 125, 287, 461, 629
AcsI RAATTY 2 cut(s) 390, 634
AgsI TTSAA 3 cut(s) 418, 468, 609
AjnI CCWGG 1 cut(s) 342
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AoxI GGCC 2 cut(s) 161, 256
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 390, 634
AspLEI GCGC 1 cut(s) 588
AspS9I GGNCC 2 cut(s) 402, 409
AsuC2I CCSGG 1 cut(s) 406
AsuHPI GGTGA 3 cut(s) 80, 91, 270
AvaII GGWCC 2 cut(s) 402, 409
BbsI GAAGAC 1 cut(s) 130
BbvI GCAGC 1 cut(s) 350
BccI CCATC 2 cut(s) 208, 466
BciT130I CCWGG 1 cut(s) 344
BciVI GTATCC 2 cut(s) 219, 283
BcnI CCSGG 1 cut(s) 406
BfaI CTAG 2 cut(s) 219, 273
BfuI GTATCC 2 cut(s) 219, 283
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 2 cut(s) 344, 406
Bme18I GGWCC 2 cut(s) 402, 409
BmgT120I GGNCC 2 cut(s) 402, 409
BmiI GGNNCC 2 cut(s) 410, 411
BmrFI CCNGG 2 cut(s) 344, 406
BmsI GCATC 3 cut(s) 79, 186, 414
BoxI GACNNNNGTC 1 cut(s) 407
BpiI GAAGAC 1 cut(s) 130
BpuMI CCSGG 1 cut(s) 406
Bsa29I ATCGAT 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 342, 405
Bse3DI GCAATG 1 cut(s) 264
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 203
BseDI CCNNGG 2 cut(s) 342, 405
BseGI GGATG 2 cut(s) 19, 453
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 2 cut(s) 555, 609
BseXI GCAGC 1 cut(s) 350
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 2 cut(s) 163, 258
BshVI ATCGAT 1 cut(s) 203
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 2 cut(s) 163, 258
Bsp143I GATC 1 cut(s) 142
BspACI CCGC 4 cut(s) 125, 287, 461, 629
BspANI GGCC 2 cut(s) 163, 258
BspCNI CTCAG 2 cut(s) 556, 610
BspDI ATCGAT 1 cut(s) 203
BspFNI CGCG 1 cut(s) 629
BspLI GGNNCC 2 cut(s) 410, 411
BsrDI GCAATG 1 cut(s) 264
BssECI CCNNGG 2 cut(s) 342, 405
BssMI GATC 1 cut(s) 142
Bst2UI CCWGG 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 564, 618
BstEII GGTNACC 1 cut(s) 276
BstF5I GGATG 2 cut(s) 19, 453
BstFNI CGCG 1 cut(s) 629
BstHHI GCGC 1 cut(s) 588
BstKTI GATC 1 cut(s) 145
BstMBI GATC 1 cut(s) 142
BstMWI GCNNNNNNNGC 3 cut(s) 293, 483, 583
BstNI CCWGG 1 cut(s) 344
BstPAI GACNNNNGTC 1 cut(s) 407
BstPI GGTNACC 1 cut(s) 276
BstSCI CCNGG 2 cut(s) 342, 404
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 130
Bsu15I ATCGAT 1 cut(s) 203
BsuI GTATCC 2 cut(s) 219, 283
BsuRI GGCC 2 cut(s) 163, 258
BsuTUI ATCGAT 1 cut(s) 203
BtsCI GGATG 2 cut(s) 19, 453
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 33
CfoI GCGC 1 cut(s) 588
Cfr13I GGNCC 2 cut(s) 402, 409
ClaI ATCGAT 1 cut(s) 203
CseI GACGC 1 cut(s) 373
CviAII CATG 1 cut(s) 215
CviJI RGCY 3 cut(s) 163, 258, 341
CviKI_1 RGCY 3 cut(s) 163, 258, 341
DdeI CTNAG 2 cut(s) 564, 618
DpnI GATC 1 cut(s) 144
DpnII GATC 1 cut(s) 142
Eco47I GGWCC 2 cut(s) 402, 409
Eco91I GGTNACC 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 409
EcoO65I GGTNACC 1 cut(s) 276
EcoRI GAATTC 2 cut(s) 390, 634
EcoRII CCWGG 1 cut(s) 342
FaeI CATG 1 cut(s) 218
FaiI YATR 4 cut(s) 216, 234, 396, 640
FaqI GGGAC 1 cut(s) 395
FatI CATG 1 cut(s) 214
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 2 cut(s) 6, 440
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 2 cut(s) 219, 273
GlaI GCGC 1 cut(s) 587
GluI GCNGC 1 cut(s) 339
HaeIII GGCC 2 cut(s) 163, 258
HapII CCGG 1 cut(s) 405
HgaI GACGC 1 cut(s) 373
HhaI GCGC 1 cut(s) 588
Hin1II CATG 1 cut(s) 218
Hin6I GCGC 1 cut(s) 586
HinP1I GCGC 1 cut(s) 586
HpaII CCGG 1 cut(s) 405
HphI GGTGA 3 cut(s) 80, 91, 270
Hpy166II GTNNAC 1 cut(s) 508
Hpy188I TCNGA 3 cut(s) 56, 565, 619
Hpy188III TCNNGA 1 cut(s) 146
Hpy8I GTNNAC 1 cut(s) 508
HpyAV CCTTC 2 cut(s) 76, 424
HpyCH4IV ACGT 2 cut(s) 5, 190
HpyCH4V TGCA 1 cut(s) 236
HpyF10VI GCNNNNNNNGC 3 cut(s) 293, 483, 583
HpyF3I CTNAG 2 cut(s) 564, 618
HpySE526I ACGT 2 cut(s) 5, 190
Hsp92II CATG 1 cut(s) 218
HspAI GCGC 1 cut(s) 586
KflI GGGWCCC 1 cut(s) 409
Kzo9I GATC 1 cut(s) 142
LmnI GCTCC 2 cut(s) 188, 515
LpnPI CCDG 6 cut(s) 17, 145, 329, 356, 418, 512
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 3 cut(s) 79, 186, 414
MaeI CTAG 2 cut(s) 219, 273
MaeII ACGT 2 cut(s) 5, 190
MaeIII GTNAC 3 cut(s) 68, 276, 478
MalI GATC 1 cut(s) 144
MboI GATC 1 cut(s) 142
MboII GAAGA 3 cut(s) 130, 580, 634
MluCI AATT 6 cut(s) 15, 37, 252, 314, 390, 634
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 2 cut(s) 215, 516
MslI CAYNNNNRTG 1 cut(s) 491
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 344, 406
MvaI CCWGG 1 cut(s) 344
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 293, 483, 583
NciI CCSGG 1 cut(s) 406
NdeII GATC 1 cut(s) 142
NlaIII CATG 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 410, 411
NmuCI GTSAC 2 cut(s) 68, 276
PcsI WCGNNNNNNNCGW 1 cut(s) 187
PkrI GCNGC 1 cut(s) 340
PpuMI RGGWCCY 1 cut(s) 409
PshAI GACNNNNGTC 1 cut(s) 407
Psp5II RGGWCCY 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 342
PspEI GGTNACC 1 cut(s) 276
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 410, 411
PspPI GGNCC 2 cut(s) 402, 409
PspPPI RGGWCCY 1 cut(s) 409
RseI CAYNNNNRTG 1 cut(s) 491
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 1 cut(s) 142
Sau96I GGNCC 2 cut(s) 402, 409
ScrFI CCNGG 2 cut(s) 344, 406
SetI ASST 4 cut(s) 8, 81, 193, 278
SfaNI GCATC 3 cut(s) 79, 186, 414
SinI GGWCC 2 cut(s) 402, 409
SmiMI CAYNNNNRTG 1 cut(s) 491
Sse9I AATT 6 cut(s) 15, 37, 252, 314, 390, 634
SsiI CCGC 4 cut(s) 125, 287, 461, 629
SspI AATATT 1 cut(s) 228
SspMI CTAG 2 cut(s) 219, 273
StyD4I CCNGG 2 cut(s) 342, 404
TaiI ACGT 2 cut(s) 8, 193
TaqI TCGA 5 cut(s) 141, 203, 309, 356, 422
TasI AATT 6 cut(s) 15, 37, 252, 314, 390, 634
TscAI CASTG 1 cut(s) 243
TseFI GTSAC 2 cut(s) 68, 276
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 68, 276
TspDTI ATGAA 3 cut(s) 8, 383, 627
TspRI CASTG 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 402, 409
XapI RAATTY 2 cut(s) 390, 634
XspI CTAG 2 cut(s) 219, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.