Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Reverse (-)

15508210 .. 15508539

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0171600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGCCTTAAGCAAGTCAACCTTCATTGCTTGCACTTTATTCCTTTCCCTACTTATAATCTCAACCTGGGAAATTCAGTCCGTTGATGCAAGGCGTTTGATTGATACTAGCGAGCTCCAAACTCTCCACACTGATCAATACAAATCAGTGGTTCATAACGAGACTGAAACTTCAAAAGCAGTGGTCGTATCTCCCCCAACATCAGTGACACCACCACAAAGTGAGGTTGCTAGTGCAGCACAGCCCCCTCCTCCCGCCCATGGCATAGTTGACTTCAGGCCCACGGCTCCAGGTCACAGCCCCGGTGTTGGACATTCCACTCACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

109

Amino Acids

11.64

Weight (kDa)

6.01

Isoelectric Point (pI)

60.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	56
AciI	CCGC	1 cut(s)	255
AcsI	RAATTY	1 cut(s)	72
AcuI	CTGAAG	1 cut(s)	259
AdeI	CACNNNGTG	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	260, 308
AflII	CTTAAG	1 cut(s)	7
AgsI	TTSAA	1 cut(s)	174
AjnI	CCWGG	2 cut(s)	65, 289
AluBI	AGCT	1 cut(s)	115
AluI	AGCT	1 cut(s)	115
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	155
AoxI	GGCC	2 cut(s)	3, 278
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	72
AspS9I	GGNCC	1 cut(s)	279
AsuC2I	CCSGG	1 cut(s)	303
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	300
BciT130I	CCWGG	2 cut(s)	67, 291
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	155
BfaI	CTAG	3 cut(s)	108, 231, 328
BfrI	CTTAAG	1 cut(s)	7
BisI	GCNGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	3 cut(s)	67, 291, 303
BmgT120I	GGNCC	1 cut(s)	279
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	3 cut(s)	67, 291, 303
BmsI	GCATC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	273
BpuMI	CCSGG	1 cut(s)	303
BsaJI	CCNNGG	4 cut(s)	66, 259, 282, 301
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 308
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	67, 291
BseDI	CCNNGG	4 cut(s)	66, 259, 282, 301
BseLI	CCNNNNNNNGG	2 cut(s)	260, 308
BseMI	GCAATG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	248
BsgI	GTGCAG	1 cut(s)	255
BshFI	GGCC	2 cut(s)	5, 280
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	260, 308
BsmAI	GTCTC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	5, 280
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	1 cut(s)	133
Bsp19I	CCATGG	1 cut(s)	259
BspACI	CCGC	1 cut(s)	255
BspANI	GGCC	2 cut(s)	5, 280
BspLI	GGNNCC	1 cut(s)	288
BspTI	CTTAAG	1 cut(s)	7
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	4 cut(s)	66, 259, 282, 301
BssMI	GATC	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	259
Bst2UI	CCWGG	2 cut(s)	67, 291
BstAFI	CTTAAG	1 cut(s)	7
BstC8I	GCNNGC	2 cut(s)	31, 113
BstDSI	CCRYGG	2 cut(s)	259, 282
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	155
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstNI	CCWGG	2 cut(s)	67, 291
BstSCI	CCNGG	3 cut(s)	65, 289, 301
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	5, 280
BtgI	CCRYGG	2 cut(s)	259, 282
BtsI	GCAGTG	1 cut(s)	186
BtsIMutI	CAGTG	4 cut(s)	129, 153, 186, 210
Cac8I	GCNNGC	2 cut(s)	31, 113
Cfr13I	GGNCC	1 cut(s)	279
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	6 cut(s)	5, 115, 244, 280, 287, 300
CviKI_1	RGCY	6 cut(s)	5, 115, 244, 280, 287, 300
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DraIII	CACNNNGTG	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	259
Eco24I	GRGCYC	1 cut(s)	117
Eco53kI	GAGCTC	1 cut(s)	115
Eco57I	CTGAAG	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	65, 289
EcoT14I	CCWWGG	1 cut(s)	259
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	1 cut(s)	263
FaiI	YATR	4 cut(s)	56, 156, 261, 266
FalI	AAGNNNNNCTT	1 cut(s)	37
FatI	CATG	1 cut(s)	259
FauI	CCCGC	1 cut(s)	262
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	237
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	3 cut(s)	108, 231, 328
GluI	GCNGC	1 cut(s)	237
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	5, 280
HapII	CCGG	1 cut(s)	303
Hin1II	CATG	1 cut(s)	263
HincII	GTYRAC	2 cut(s)	18, 271
HindII	GTYRAC	2 cut(s)	18, 271
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	18, 271
Hpy8I	GTNNAC	2 cut(s)	18, 271
HpyAV	CCTTC	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	33, 89, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
Hsp92II	CATG	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	2 cut(s)	120, 292
LpnPI	CCDG	6 cut(s)	52, 79, 262, 276, 303, 316
Lsp1109I	GCAGC	1 cut(s)	248
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	3 cut(s)	108, 231, 328
MaeIII	GTNAC	2 cut(s)	205, 293
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	1 cut(s)	72
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	217, 258, 261
MseI	TTAA	1 cut(s)	8
MspCI	CTTAAG	1 cut(s)	7
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	67, 291, 303
MvaI	CCWGG	2 cut(s)	67, 291
MwoI	GCNNNNNNNGC	1 cut(s)	236
NciI	CCSGG	1 cut(s)	303
NcoI	CCATGG	1 cut(s)	259
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	205, 293
PkrI	GCNGC	1 cut(s)	238
PsiI	TTATAA	1 cut(s)	56
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	65, 289
PspGI	CCWGG	2 cut(s)	65, 289
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	279
SacI	GAGCTC	1 cut(s)	117
SaqAI	TTAA	1 cut(s)	8
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	1 cut(s)	279
ScrFI	CCNGG	3 cut(s)	67, 291, 303
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	5 cut(s)	23, 68, 117, 228, 295
SfaNI	GCATC	1 cut(s)	76
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	255
SspMI	CTAG	3 cut(s)	108, 231, 328
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	3 cut(s)	65, 289, 301
StyI	CCWWGG	1 cut(s)	259
TasI	AATT	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	8
Tru9I	TTAA	1 cut(s)	8
TscAI	CASTG	4 cut(s)	136, 153, 186, 210
TseFI	GTSAC	2 cut(s)	205, 293
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	205, 293
TspDTI	ATGAA	2 cut(s)	13, 143
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	4 cut(s)	136, 153, 186, 210
Vha464I	CTTAAG	1 cut(s)	7
XapI	RAATTY	1 cut(s)	72
XspI	CTAG	3 cut(s)	108, 231, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.