Rmu_sc0003055.1_g000002

Magnesium-dependent phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003055.1
OG0004104
Physical Location & Seq
Reverse (-)
4134 .. 4796
663 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003055.1_g000002.1.cds

Sequence Viewer

Length: 321 bp
atggccgtggcctcaagatccccaactcccgatgtagccaaatcgttccttcaaactttgggcatcagctccttctttgtgacccaggagattttcccgagcagtactcacaaaacagaccatttcaagaatattcatgcaacaacgggggtgccctttacctcaatgctattctttgatgatgaggataggaatattcatgcggtatcggaaatggaagtgacaagcattttagttgatagtggggtggaccttgaagctttggggcagggattgtctgagttttcaagaaagtcagcttcatctagcaggagggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Acid_PPase

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

5.42

Isoelectric Point (pI)

65.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 151
AciI CCGC 1 cut(s) 203
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 106
AgsI TTSAA 4 cut(s) 53, 127, 257, 288
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 3 cut(s) 69, 260, 299
AluI AGCT 3 cut(s) 69, 260, 299
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 97
AoxI GGCC 2 cut(s) 3, 9
AspS9I GGNCC 1 cut(s) 250
AvaI CYCGRG 1 cut(s) 97
AvaII GGWCC 1 cut(s) 250
BaeGI GKGCMC 1 cut(s) 156
BanI GGYRCC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 86
BfaI CTAG 1 cut(s) 306
BmcAI AGTACT 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 86
Bme18I GGWCC 1 cut(s) 250
BmeT110I CYCGRG 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 86
BmsI GCATC 1 cut(s) 72
BplI GAGNNNNNCTC 2 cut(s) 91, 123
BsaJI CCNNGG 2 cut(s) 6, 84
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 2 cut(s) 6, 84
BseMII CTCAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 156
BshFI GGCC 2 cut(s) 5, 11
BshNI GGYRCC 1 cut(s) 151
BsiHKCI CYCGRG 1 cut(s) 97
BsnI GGCC 2 cut(s) 5, 11
BsoBI CYCGRG 1 cut(s) 97
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 17
BspACI CCGC 1 cut(s) 203
BspANI GGCC 2 cut(s) 5, 11
BspCNI CTCAG 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 153
BspPI GGATC 1 cut(s) 12
BspT107I GGYRCC 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 6, 84
BssMI GATC 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 86
BstDEI CTNAG 1 cut(s) 279
BstDSI CCRYGG 1 cut(s) 6
BstKTI GATC 1 cut(s) 20
BstMBI GATC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 86
BstSCI CCNGG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuRI GGCC 2 cut(s) 5, 11
BtgI CCRYGG 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 105
CviAII CATG 2 cut(s) 137, 200
CviJI RGCY 6 cut(s) 5, 11, 38, 69, 260, 299
CviKI_1 RGCY 6 cut(s) 5, 11, 38, 69, 260, 299
CviQI GTAC 1 cut(s) 105
DdeI CTNAG 1 cut(s) 279
DpnI GATC 1 cut(s) 19
DpnII GATC 1 cut(s) 17
EaeI YGGCCR 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 250
Eco88I CYCGRG 1 cut(s) 97
EcoRII CCWGG 1 cut(s) 84
FaeI CATG 2 cut(s) 140, 203
FaiI YATR 2 cut(s) 138, 201
FatI CATG 2 cut(s) 136, 199
FspBI CTAG 1 cut(s) 306
HaeIII GGCC 2 cut(s) 5, 11
Hin1II CATG 2 cut(s) 140, 203
HindIII AAGCTT 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 250
Hpy188I TCNGA 2 cut(s) 211, 280
Hpy188III TCNNGA 5 cut(s) 15, 29, 97, 127, 288
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 59, 82
HpyCH4V TGCA 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 2 cut(s) 140, 203
Kzo9I GATC 1 cut(s) 17
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 71, 98, 254, 295
LweI GCATC 1 cut(s) 72
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 79, 220
MalI GATC 1 cut(s) 19
MboI GATC 1 cut(s) 17
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 156
MnlI CCTC 4 cut(s) 22, 172, 178, 306
MspR9I CCNGG 1 cut(s) 86
MvaI CCWGG 1 cut(s) 86
NdeII GATC 1 cut(s) 17
NlaIII CATG 2 cut(s) 140, 203
NlaIV GGNNCC 1 cut(s) 153
NmuCI GTSAC 2 cut(s) 79, 220
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 153
PspPI GGNCC 1 cut(s) 250
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 1 cut(s) 106
RsaNI GTAC 1 cut(s) 105
Sau3AI GATC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 250
ScaI AGTACT 1 cut(s) 106
ScrFI CCNGG 1 cut(s) 86
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 71, 164, 255, 262, 301
SfaNI GCATC 1 cut(s) 72
SinI GGWCC 1 cut(s) 250
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SsiI CCGC 1 cut(s) 203
SspI AATATT 2 cut(s) 133, 196
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 84
TatI WGTACW 1 cut(s) 104
TseFI GTSAC 2 cut(s) 79, 220
Tsp45I GTSAC 2 cut(s) 79, 220
TspDTI ATGAA 3 cut(s) 125, 188, 291
VpaK11BI GGWCC 1 cut(s) 250
XspI CTAG 1 cut(s) 306
ZrmI AGTACT 1 cut(s) 106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.