Rw6G015130

Magnesium-dependent phosphatase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
28320049 .. 28321906
1858 bp
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UTR
Exon/CDS
Intron
Rw6G015130.1

Sequence Viewer

Length: 549 bp
ATGGGGGACGAGAAGGTGAAGGCAGAGGCTTTAGAGTTACTGGGAATGTTCCAAGTGCTTCCCAGATTGGTTGTCTTCGATCTGGATTACACTCTGTGGCCTTTCTATTGCGAATGTCGCTCCAAACGTGAAATGCCATCATTGTATGACGATGGTAGAGGCATACTGTACGCATTGAAGGAAAAAGGGATTGATCTTGCCATTGCTTCCAGGTCACCAACTGCAGATATAGCAGAGACATTTCTTGACAAATTGAGCATCAAGTCAATGTTTGTAGCTCAGGAGATCTTTTCAAGTAGGAAACACAAGACTGATCATTTCCAGAACATTCGCTCAAGGACTGGGGTGCCCTTTAATTCAATGCTTTTCTTTGATGATGGGAACAGGAACATCCAAGCGGTTTCAAAGATGGGTGTAACGAGCATTTTGGTAAACGAAGGAGTAAATGTTAGAGCGTTGGAGCAAGGTCTTACAAAATACTCTGAAAATCGCACAAAGTTCTCCCAAAATTCAAATTCATCAAAGAAGAATGAGAGTGAAGATAAATGA
Functional Annotation

Protein Analysis

182

Amino Acids

20.69

Weight (kDa)

7.72

Isoelectric Point (pI)

55.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_PPase PF12689 20 - 40 1.3e-06 Acid Phosphatase
HAD_2 PF13419 42 - 144 1.5e-08 Haloacid dehalogenase-like hydrolase
Acid_PPase PF12689 47 - 162 5.3e-27 Acid Phosphatase
Hydrolase PF00702 47 - 137 1.2e-06 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 346
AciI CCGC 1 cut(s) 398
AcsI RAATTY 2 cut(s) 508, 514
AdeI CACNNNGTG 1 cut(s) 96
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 5 cut(s) 178, 294, 360, 405, 513
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 230
AoxI GGCC 1 cut(s) 98
ApoI RAATTY 2 cut(s) 508, 514
AsuHPI GGTGA 2 cut(s) 28, 207
BaeGI GKGCMC 1 cut(s) 351
BanI GGYRCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 67
BccI CCATC 4 cut(s) 145, 146, 371, 403
BciT130I CCWGG 1 cut(s) 211
BclI TGATCA 1 cut(s) 313
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 222
BglII AGATCT 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 211
BmiI GGNNCC 1 cut(s) 348
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 2 cut(s) 50, 351
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 2 cut(s) 50, 351
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 279
BpuEI CTTGAG 1 cut(s) 319
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bse1I ACTGG 2 cut(s) 45, 346
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 211
BseGI GGATG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 45, 346
BseSI GKGCMC 1 cut(s) 351
BshFI GGCC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 346
BslFI GGGAC 1 cut(s) 20
BsmAI GTCTC 1 cut(s) 230
BsmFI GGGAC 1 cut(s) 20
BsnI GGCC 1 cut(s) 100
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 4 cut(s) 79, 193, 285, 313
BspACI CCGC 1 cut(s) 398
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 348
BspMAI CTGCAG 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 2 cut(s) 45, 346
BssMI GATC 4 cut(s) 79, 193, 285, 313
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 279
BstEII GGTNACC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 390
BstKTI GATC 4 cut(s) 82, 196, 288, 316
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 4 cut(s) 79, 193, 285, 313
BstMWI GCNNNNNNNGC 2 cut(s) 117, 230
BstNI CCWGG 1 cut(s) 211
BstPI GGTNACC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 351
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 390
Csp6I GTAC 1 cut(s) 169
CviJI RGCY 3 cut(s) 29, 100, 278
CviKI_1 RGCY 3 cut(s) 29, 100, 278
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 279
DpnI GATC 4 cut(s) 81, 195, 287, 315
DpnII GATC 4 cut(s) 79, 193, 285, 313
DraIII CACNNNGTG 1 cut(s) 96
Eco91I GGTNACC 1 cut(s) 213
EcoO65I GGTNACC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 209
FaiI YATR 3 cut(s) 147, 164, 230
FaqI GGGAC 1 cut(s) 20
FbaI TGATCA 1 cut(s) 313
FokI GGATG 1 cut(s) 377
HaeIII GGCC 1 cut(s) 100
HphI GGTGA 2 cut(s) 28, 207
Hpy166II GTNNAC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 484
Hpy188III TCNNGA 4 cut(s) 83, 245, 281, 322
Hpy8I GTNNAC 1 cut(s) 433
HpyAV CCTTC 4 cut(s) 7, 13, 172, 431
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4IV ACGT 1 cut(s) 127
HpyCH4V TGCA 1 cut(s) 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 230
HpyF3I CTNAG 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 4 cut(s) 79, 193, 285, 313
LmnI GCTCC 2 cut(s) 125, 460
LpnPI CCDG 9 cut(s) 26, 68, 76, 196, 223, 266, 327, 335, 370
LweI GCATC 1 cut(s) 267
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 3 cut(s) 36, 213, 415
MalI GATC 4 cut(s) 81, 195, 287, 315
MboI GATC 4 cut(s) 79, 193, 285, 313
MboII GAAGA 2 cut(s) 67, 538
MflI RGATCY 1 cut(s) 285
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 4 cut(s) 251, 355, 508, 514
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 2 cut(s) 19, 152
MseI TTAA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MwoI GCNNNNNNNGC 2 cut(s) 117, 230
NdeII GATC 4 cut(s) 79, 193, 285, 313
NlaIV GGNNCC 1 cut(s) 348
NmuCI GTSAC 1 cut(s) 213
PcsI WCGNNNNNNNCGW 1 cut(s) 124
Psp6I CCWGG 1 cut(s) 209
PspEI GGTNACC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 1 cut(s) 348
PstI CTGCAG 1 cut(s) 226
PsuI RGATCY 1 cut(s) 285
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 4 cut(s) 79, 193, 285, 313
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 351
SetI ASST 5 cut(s) 18, 130, 215, 280, 469
SfaNI GCATC 1 cut(s) 267
SfcI CTRYAG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
Sse9I AATT 4 cut(s) 251, 355, 508, 514
SsiI CCGC 1 cut(s) 398
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 168
TaiI ACGT 1 cut(s) 130
TaqI TCGA 1 cut(s) 78
TasI AATT 4 cut(s) 251, 355, 508, 514
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 507
XapI RAATTY 2 cut(s) 508, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.