Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010074.1

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Forward (+)

9804 .. 11658

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010074.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atgggggacgagaaggtgaaggcagaggctttagagttactgggaatgttccaagtgcttcccagactggttgtcttcgatcttgattacactctttggcctttctattgcgaatgtcgctccaaacgtgacatgccatcattgtatcacgatggtagaggcatactgtacgcattgaaggaaagagggatcgatcttgccattgcttccaggtcaccaactccagatatagcaaagacatttcttgacaaattgagcatcaagtcaatgtttgtagctcaggagatcttttcaagtaggaaacacaagactgatcatttccagaacattcgctcaaggactggggtgccctttaattcaatgcttttctttgatgatgagaacaggaacatccaagcggtttcaaagatgggtgtaacgagcattttggtaaacgaaggagtaaatgttagagcgttggagcaaggtcttacaaaatactctgaaaatgtgaacatatctgaaaagaacaagcagaaatggcgcacaaagttctcccaaaattcaaattcatcaaagaagaatgagagtgaagataaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

193

Amino Acids

22.18

Weight (kDa)

9.15

Isoelectric Point (pI)

58.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	2 cut(s)	541, 547
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	5 cut(s)	178, 294, 360, 405, 546
AhdI	GACNNNNNGTC	1 cut(s)	71
AjnI	CCWGG	1 cut(s)	209
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	98
ApoI	RAATTY	2 cut(s)	541, 547
AspLEI	GCGC	1 cut(s)	525
AsuHPI	GGTGA	2 cut(s)	28, 207
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	67
BccI	CCATC	3 cut(s)	145, 146, 403
BciT130I	CCWGG	1 cut(s)	211
BclI	TGATCA	1 cut(s)	313
BglII	AGATCT	1 cut(s)	285
Bme1390I	CCNGG	1 cut(s)	211
BmeRI	GACNNNNNGTC	1 cut(s)	71
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	211
BmrI	ACTGGG	2 cut(s)	50, 351
BmsI	GCATC	1 cut(s)	267
BmuI	ACTGGG	2 cut(s)	50, 351
BpiI	GAAGAC	1 cut(s)	67
BpmI	CTGGAG	1 cut(s)	207
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	192
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bse1I	ACTGG	3 cut(s)	45, 72, 346
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	211
BseCI	ATCGAT	1 cut(s)	192
BseGI	GGATG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	3 cut(s)	45, 72, 346
BseSI	GKGCMC	1 cut(s)	351
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	20
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	79, 189, 193, 285, 313
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	3 cut(s)	45, 72, 346
BssMI	GATC	5 cut(s)	79, 189, 193, 285, 313
Bst2UI	CCWGG	1 cut(s)	211
Bst4CI	ACNGT	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	5 cut(s)	82, 192, 196, 288, 316
BstMBI	GATC	5 cut(s)	79, 189, 193, 285, 313
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 520
BstNI	CCWGG	1 cut(s)	211
BstNSI	RCATGY	1 cut(s)	136
BstPI	GGTNACC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	209
BstSLI	GKGCMC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	390
CfoI	GCGC	1 cut(s)	525
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	1 cut(s)	133
CviJI	RGCY	3 cut(s)	29, 100, 278
CviKI_1	RGCY	3 cut(s)	29, 100, 278
CviQI	GTAC	1 cut(s)	169
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	81, 191, 195, 287, 315
DpnII	GATC	5 cut(s)	79, 189, 193, 285, 313
DriI	GACNNNNNGTC	1 cut(s)	71
Eam1105I	GACNNNNNGTC	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	209
FaeI	CATG	1 cut(s)	136
FaiI	YATR	4 cut(s)	134, 164, 230, 497
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	132
FbaI	TGATCA	1 cut(s)	313
FokI	GGATG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	524
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	100
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	1 cut(s)	136
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HphI	GGTGA	2 cut(s)	28, 207
Hpy166II	GTNNAC	2 cut(s)	433, 493
Hpy188I	TCNGA	2 cut(s)	484, 502
Hpy188III	TCNNGA	6 cut(s)	83, 149, 224, 245, 281, 322
Hpy8I	GTNNAC	2 cut(s)	433, 493
HpyAV	CCTTC	4 cut(s)	7, 13, 172, 431
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	127
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 520
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	136
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	79, 189, 193, 285, 313
LmnI	GCTCC	2 cut(s)	125, 460
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	4 cut(s)	36, 128, 213, 415
MalI	GATC	5 cut(s)	81, 191, 195, 287, 315
MboI	GATC	5 cut(s)	79, 189, 193, 285, 313
MboII	GAAGA	2 cut(s)	67, 571
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	4 cut(s)	251, 355, 541, 547
MmeI	TCCRAC	1 cut(s)	438
MnlI	CCTC	3 cut(s)	19, 152, 179
MseI	TTAA	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	211
MwoI	GCNNNNNNNGC	2 cut(s)	117, 520
NdeII	GATC	5 cut(s)	79, 189, 193, 285, 313
NlaIII	CATG	1 cut(s)	136
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	2 cut(s)	128, 213
NspI	RCATGY	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
Psp6I	CCWGG	1 cut(s)	209
PspEI	GGTNACC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	79, 189, 193, 285, 313
ScrFI	CCNGG	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	5 cut(s)	18, 130, 215, 280, 469
SfaNI	GCATC	1 cut(s)	267
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	4 cut(s)	251, 355, 541, 547
SsiI	CCGC	1 cut(s)	398
StyD4I	CCNGG	1 cut(s)	209
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	78, 192
TasI	AATT	4 cut(s)	251, 355, 541, 547
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	2 cut(s)	128, 213
Tsp45I	GTSAC	2 cut(s)	128, 213
TspDTI	ATGAA	1 cut(s)	540
XapI	RAATTY	2 cut(s)	541, 547
XceI	RCATGY	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.