Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Reverse (-)

25000163 .. 25002006

Gene Structure 1844 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGGGGACGAGAAAGTGAAGGCAGAGGCTTTAGAGTTACTGGGAATGTTCCAAGTGCTTCCCAGATTGGTTGTCTTCGATCTTGATTACACTCTTTGGCCTTTCTATTGCGAATGTCGCTCCAAACGTGAAATGCCATCATTGTATCCCCCGGCTAGGGGCATACTGTACGCATTGAAGGAAAGAGGGATCGATCTTGCCATTGCTTCTAGGTCACCAACTGCAGATATAGCAGAGACATTTCTTGACAAATTGAGCATCAATTCAATGTTTGTAGCTCAGGAGATCTTTTCAAGTAAGAAACACAAGACTGATCATTTCCAGAAAATTCGCTCAAGTACTGGGGTGCCCTTTAATTCAATGCTTTTCTTTGATGATGAGAACAGGAACATCCAAGCGGTTTCAAAGATGGGTGTAACGAGCATTTTGGTAAACAAAGGAGTAAATGTTAGAGCGTTGAGGCAAGGTCTTACAAAATACTCTGAAAATGTGAACATATCTGAAAAGAACAAGCAGAAATGGCGCACAAAGTTCTCCCAAAATTCAAATTCATCAAAGAAGAATGAGAGTGAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

193

Amino Acids

22.06

Weight (kDa)

9.37

Isoelectric Point (pI)

58.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	20 - 162	1.6e-34	Acid Phosphatase
HAD_2	PF13419	42 - 144	4.9e-09	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	46 - 137	1.6e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	346
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	1 cut(s)	197
AcsI	RAATTY	3 cut(s)	327, 541, 547
AfaI	GTAC	2 cut(s)	170, 340
AfiI	CCNNNNNNNGG	3 cut(s)	156, 157, 158
AgsI	TTSAA	6 cut(s)	178, 267, 294, 360, 405, 546
AluBI	AGCT	1 cut(s)	278
AluI	AGCT	1 cut(s)	278
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	1 cut(s)	98
ApoI	RAATTY	3 cut(s)	327, 541, 547
AspLEI	GCGC	1 cut(s)	525
AsuC2I	CCSGG	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	207
BaeGI	GKGCMC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	346
BbsI	GAAGAC	1 cut(s)	67
BccI	CCATC	2 cut(s)	145, 403
BciVI	GTATCC	1 cut(s)	156
BclI	TGATCA	1 cut(s)	313
BcnI	CCSGG	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	2 cut(s)	156, 210
BfmI	CTRYAG	1 cut(s)	222
BfuI	GTATCC	1 cut(s)	156
BglII	AGATCT	1 cut(s)	285
BmcAI	AGTACT	1 cut(s)	340
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	152
BmrI	ACTGGG	2 cut(s)	50, 351
BmsI	GCATC	1 cut(s)	267
BmuI	ACTGGG	2 cut(s)	50, 351
BpiI	GAAGAC	1 cut(s)	67
Bpu10I	CCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	319
BpuMI	CCSGG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	432, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	156, 157, 158
Bse1I	ACTGG	2 cut(s)	45, 346
Bse3DI	GCAATG	1 cut(s)	201
BseCI	ATCGAT	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	390
BseLI	CCNNNNNNNGG	3 cut(s)	156, 157, 158
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	293
BseNI	ACTGG	2 cut(s)	45, 346
BseSI	GKGCMC	1 cut(s)	351
BshFI	GGCC	1 cut(s)	100
BshNI	GGYRCC	1 cut(s)	346
BshVI	ATCGAT	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	152
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	156, 157, 158
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	1 cut(s)	100
Bsp1286I	GDGCHC	1 cut(s)	351
Bsp143I	GATC	5 cut(s)	79, 189, 193, 285, 313
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	100
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	1 cut(s)	192
BspLI	GGNNCC	1 cut(s)	348
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	197
BspT107I	GGYRCC	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	45, 346
BssECI	CCNNGG	1 cut(s)	150
BssMI	GATC	5 cut(s)	79, 189, 193, 285, 313
Bst4CI	ACNGT	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	279
BstEII	GGTNACC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	390
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	5 cut(s)	82, 192, 196, 288, 316
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	5 cut(s)	79, 189, 193, 285, 313
BstMWI	GCNNNNNNNGC	3 cut(s)	117, 230, 520
BstPI	GGTNACC	1 cut(s)	213
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	222
BstSLI	GKGCMC	1 cut(s)	351
BstV2I	GAAGAC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
Bsu15I	ATCGAT	1 cut(s)	192
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	1 cut(s)	100
BsuTUI	ATCGAT	1 cut(s)	192
BtsCI	GGATG	1 cut(s)	390
CfoI	GCGC	1 cut(s)	525
ClaI	ATCGAT	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	169, 339
CviJI	RGCY	4 cut(s)	29, 100, 155, 278
CviKI_1	RGCY	4 cut(s)	29, 100, 155, 278
CviQI	GTAC	2 cut(s)	169, 339
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	5 cut(s)	81, 191, 195, 287, 315
DpnII	GATC	5 cut(s)	79, 189, 193, 285, 313
Eco91I	GGTNACC	1 cut(s)	213
EcoO65I	GGTNACC	1 cut(s)	213
FaiI	YATR	3 cut(s)	164, 230, 497
FaqI	GGGAC	1 cut(s)	20
FbaI	TGATCA	1 cut(s)	313
FokI	GGATG	1 cut(s)	377
FspBI	CTAG	2 cut(s)	156, 210
GlaI	GCGC	1 cut(s)	524
HaeIII	GGCC	1 cut(s)	100
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	525
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	433, 493
Hpy188I	TCNGA	2 cut(s)	484, 502
Hpy188III	TCNNGA	4 cut(s)	83, 245, 281, 322
Hpy8I	GTNNAC	2 cut(s)	433, 493
HpyAV	CCTTC	2 cut(s)	13, 172
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	117, 230, 520
HpyF3I	CTNAG	1 cut(s)	279
HpySE526I	ACGT	1 cut(s)	127
HspAI	GCGC	1 cut(s)	523
Ksp22I	TGATCA	1 cut(s)	313
Kzo9I	GATC	5 cut(s)	79, 189, 193, 285, 313
LmnI	GCTCC	1 cut(s)	125
LpnPI	CCDG	7 cut(s)	26, 76, 165, 266, 327, 335, 370
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	2 cut(s)	156, 210
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	3 cut(s)	36, 213, 415
MalI	GATC	5 cut(s)	81, 191, 195, 287, 315
MboI	GATC	5 cut(s)	79, 189, 193, 285, 313
MboII	GAAGA	2 cut(s)	67, 571
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	1 cut(s)	351
MluCI	AATT	6 cut(s)	251, 262, 327, 355, 541, 547
MnlI	CCTC	3 cut(s)	19, 179, 453
MseI	TTAA	1 cut(s)	354
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	3 cut(s)	117, 230, 520
NciI	CCSGG	1 cut(s)	152
NdeII	GATC	5 cut(s)	79, 189, 193, 285, 313
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PspEI	GGTNACC	1 cut(s)	213
PspN4I	GGNNCC	1 cut(s)	348
PstI	CTGCAG	1 cut(s)	226
PsuI	RGATCY	1 cut(s)	285
RsaI	GTAC	2 cut(s)	170, 340
RsaNI	GTAC	2 cut(s)	169, 339
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	5 cut(s)	79, 189, 193, 285, 313
ScaI	AGTACT	1 cut(s)	340
ScrFI	CCNGG	1 cut(s)	152
SduI	GDGCHC	1 cut(s)	351
SetI	ASST	4 cut(s)	130, 215, 280, 469
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	222
SmlI	CTYRAG	1 cut(s)	334
SmoI	CTYRAG	1 cut(s)	334
Sse9I	AATT	6 cut(s)	251, 262, 327, 355, 541, 547
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	2 cut(s)	156, 210
StyD4I	CCNGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	78, 192
TasI	AATT	6 cut(s)	251, 262, 327, 355, 541, 547
TatI	WGTACW	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	213
Tsp45I	GTSAC	1 cut(s)	213
TspDTI	ATGAA	1 cut(s)	540
XapI	RAATTY	3 cut(s)	327, 541, 547
XspI	CTAG	2 cut(s)	156, 210
ZrmI	AGTACT	1 cut(s)	340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.