RLG00000013753

Magnesium-dependent phosphatase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Forward (+)
40347733 .. 40349658
1926 bp
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UTR
Exon/CDS
Intron
RLM00000013753

Sequence Viewer

Length: 582 bp
ATGGGGGACGAGAAGGTGAAGGCAGAGGCTTTAGAGTTACTGGGAATGTTCCAAGTGCTTCCCAGATTGGTTGTCTTCGATCTTGATTACACTCTTTGGCCTTTCTATTGCGAATGTCGCTCCAAACGCGAAATGCCATCATTGTATCCCAAGGCTAGAGGCATACTGTATGCATTGAAGGAAAGAGGGATCGATCTTGCCATTGCTTCCAGGTCACCAACCCCAGATATAGCAAAGACATTTCTTGACAAATTGAGCATCAAGTCAATGTTTGTAGCTCAGGAGATCTTTTCAAGCTGGACACACAAGACCGATCATTTCCAGAAAATTCAGTCAAGGACTGGGGTCCCCTTTAATTCAATGCTTTTCTTTGATGATGAGAACAGGAACATCCAAGCGGTTTCAAAGATGGGTGTAACGAGCATTTTGGTAAACGAAGGAGTAAATGTTGGAGCGTTGAGGCAAGGTCTTACAAAATACTCTGAAAATGTGAACATATCTGAAAAGAACAAGCAGAAATGGCGCACAAAGTTCTCCCAAAATTCAAATTCATCAAAGAAGAATGAGAGTGAAGATAAATGA
Functional Annotation

Protein Analysis

194

Amino Acids

22.1

Weight (kDa)

9.26

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Acid_PPase PF12689 20 - 162 6.7e-36 Acid Phosphatase
HAD_2 PF13419 42 - 144 1.6e-08 Haloacid dehalogenase-like hydrolase
Hydrolase PF00702 46 - 137 7.8e-06 haloacid dehalogenase-like hydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 129
AciI CCGC 1 cut(s) 398
AclWI GGATC 1 cut(s) 197
AcsI RAATTY 3 cut(s) 327, 541, 547
AgsI TTSAA 5 cut(s) 178, 294, 360, 405, 546
AjnI CCWGG 1 cut(s) 209
AluBI AGCT 2 cut(s) 278, 297
AluI AGCT 2 cut(s) 278, 297
AlwI GGATC 1 cut(s) 197
AoxI GGCC 1 cut(s) 98
ApoI RAATTY 3 cut(s) 327, 541, 547
AspLEI GCGC 1 cut(s) 525
AspS9I GGNCC 1 cut(s) 346
AsuHPI GGTGA 2 cut(s) 28, 207
AvaII GGWCC 1 cut(s) 346
BbsI GAAGAC 1 cut(s) 67
BccI CCATC 2 cut(s) 145, 403
BciT130I CCWGG 1 cut(s) 211
BciVI GTATCC 1 cut(s) 156
BfaI CTAG 1 cut(s) 156
BfuI GTATCC 1 cut(s) 156
BglII AGATCT 1 cut(s) 285
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 346
BmgT120I GGNCC 1 cut(s) 346
BmiI GGNNCC 2 cut(s) 347, 348
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 2 cut(s) 50, 351
BmsI GCATC 1 cut(s) 267
BmuI ACTGGG 2 cut(s) 50, 351
BoxI GACNNNNGTC 1 cut(s) 344
BpiI GAAGAC 1 cut(s) 67
Bpu10I CCTNAGC 1 cut(s) 279
Bsa29I ATCGAT 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 150
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bse1I ACTGG 2 cut(s) 45, 346
Bse3DI GCAATG 1 cut(s) 201
BseBI CCWGG 1 cut(s) 211
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 1 cut(s) 150
BseGI GGATG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 201
BseMII CTCAG 1 cut(s) 293
BseNI ACTGG 2 cut(s) 45, 346
Bsh1236I CGCG 1 cut(s) 129
BshFI GGCC 1 cut(s) 100
BshVI ATCGAT 1 cut(s) 192
BslFI GGGAC 2 cut(s) 20, 332
BsmFI GGGAC 2 cut(s) 20, 332
BsnI GGCC 1 cut(s) 100
Bsp143I GATC 5 cut(s) 79, 189, 193, 285, 313
BspACI CCGC 1 cut(s) 398
BspANI GGCC 1 cut(s) 100
BspCNI CTCAG 1 cut(s) 292
BspDI ATCGAT 1 cut(s) 192
BspFNI CGCG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 347, 348
BspPI GGATC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 201
BsrI ACTGG 2 cut(s) 45, 346
BssECI CCNNGG 1 cut(s) 150
BssMI GATC 5 cut(s) 79, 189, 193, 285, 313
BssT1I CCWWGG 1 cut(s) 150
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 279
BstEII GGTNACC 1 cut(s) 213
BstF5I GGATG 1 cut(s) 390
BstFNI CGCG 1 cut(s) 129
BstHHI GCGC 1 cut(s) 525
BstKTI GATC 5 cut(s) 82, 192, 196, 288, 316
BstMBI GATC 5 cut(s) 79, 189, 193, 285, 313
BstMWI GCNNNNNNNGC 3 cut(s) 117, 126, 520
BstNI CCWGG 1 cut(s) 211
BstPAI GACNNNNGTC 1 cut(s) 344
BstPI GGTNACC 1 cut(s) 213
BstSCI CCNGG 1 cut(s) 209
BstUI CGCG 1 cut(s) 129
BstV2I GAAGAC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 285
BstYI RGATCY 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 192
BsuI GTATCC 1 cut(s) 156
BsuRI GGCC 1 cut(s) 100
BsuTUI ATCGAT 1 cut(s) 192
BtsCI GGATG 1 cut(s) 390
CfoI GCGC 1 cut(s) 525
Cfr13I GGNCC 1 cut(s) 346
ClaI ATCGAT 1 cut(s) 192
CviJI RGCY 5 cut(s) 29, 100, 155, 278, 297
CviKI_1 RGCY 5 cut(s) 29, 100, 155, 278, 297
DdeI CTNAG 1 cut(s) 279
DpnI GATC 5 cut(s) 81, 191, 195, 287, 315
DpnII GATC 5 cut(s) 79, 189, 193, 285, 313
Eco130I CCWWGG 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 346
Eco91I GGTNACC 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 213
EcoRII CCWGG 1 cut(s) 209
EcoT14I CCWWGG 1 cut(s) 150
EcoT22I ATGCAT 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 150
FaiI YATR 4 cut(s) 164, 171, 230, 497
FaqI GGGAC 2 cut(s) 20, 332
FokI GGATG 1 cut(s) 377
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 524
HaeIII GGCC 1 cut(s) 100
HhaI GCGC 1 cut(s) 525
Hin6I GCGC 1 cut(s) 523
HinP1I GCGC 1 cut(s) 523
HphI GGTGA 2 cut(s) 28, 207
Hpy166II GTNNAC 2 cut(s) 433, 493
Hpy188I TCNGA 2 cut(s) 484, 502
Hpy188III TCNNGA 4 cut(s) 83, 245, 281, 322
Hpy8I GTNNAC 2 cut(s) 433, 493
HpyAV CCTTC 4 cut(s) 7, 13, 172, 431
HpyCH4III ACNGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 126, 520
HpyF3I CTNAG 1 cut(s) 279
HspAI GCGC 1 cut(s) 523
KflI GGGWCCC 1 cut(s) 346
Kzo9I GATC 5 cut(s) 79, 189, 193, 285, 313
LmnI GCTCC 2 cut(s) 125, 452
LweI GCATC 1 cut(s) 267
MaeI CTAG 1 cut(s) 156
MaeIII GTNAC 3 cut(s) 36, 213, 415
MalI GATC 5 cut(s) 81, 191, 195, 287, 315
MboI GATC 5 cut(s) 79, 189, 193, 285, 313
MboII GAAGA 2 cut(s) 67, 571
MflI RGATCY 1 cut(s) 285
MluCI AATT 5 cut(s) 251, 327, 355, 541, 547
MmeI TCCRAC 1 cut(s) 430
MnlI CCTC 4 cut(s) 19, 152, 179, 453
Mph1103I ATGCAT 1 cut(s) 175
MseI TTAA 1 cut(s) 354
MspR9I CCNGG 1 cut(s) 211
MvaI CCWGG 1 cut(s) 211
MvnI CGCG 1 cut(s) 129
MwoI GCNNNNNNNGC 3 cut(s) 117, 126, 520
NdeII GATC 5 cut(s) 79, 189, 193, 285, 313
NlaIV GGNNCC 2 cut(s) 347, 348
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 175
PpuMI RGGWCCY 1 cut(s) 346
PshAI GACNNNNGTC 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 346
Psp6I CCWGG 1 cut(s) 209
PspEI GGTNACC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 209
PspN4I GGNNCC 2 cut(s) 347, 348
PspPI GGNCC 1 cut(s) 346
PspPPI RGGWCCY 1 cut(s) 346
PsuI RGATCY 1 cut(s) 285
SaqAI TTAA 1 cut(s) 354
Sau3AI GATC 5 cut(s) 79, 189, 193, 285, 313
Sau96I GGNCC 1 cut(s) 346
ScrFI CCNGG 1 cut(s) 211
SetI ASST 5 cut(s) 18, 215, 280, 299, 469
SfaNI GCATC 1 cut(s) 267
SinI GGWCC 1 cut(s) 346
Sse9I AATT 5 cut(s) 251, 327, 355, 541, 547
SsiI CCGC 1 cut(s) 398
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 1 cut(s) 209
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 168
TaqI TCGA 2 cut(s) 78, 192
TaqII GACCGA 1 cut(s) 326
TasI AATT 5 cut(s) 251, 327, 355, 541, 547
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseFI GTSAC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 540
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 3 cut(s) 327, 541, 547
XspI CTAG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.