Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Forward (+)

13512261 .. 13513614

Gene Structure 1354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1039300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGGCGACGACGAGAAGGTGAAGAGCGAGGCTCTGCAGATAATCGAACGACACCAGAACTTGCCGAGTCTCGTCGTCTTCGATCTCGACTACACCCTCTGGCCCTTCTTCTGCGAGTGCTTCTACTACGACGACACACCGTATCTTTACCCGCAAGCCTCGGGAATATTGTATGCGCTCAAGGACAAGGGAATATCCATGGCTGTTGCTTCGAGATCTCCAACTTCTGACGTTGCCAAATCTTTCCTCCAAAGACTGGGTATCCACTTGTTGTTTCTTACCCAGGAGATTTTCTCCAGTTGGACTCACAAAACACAGCATTTCCAAAGAATTCATGCAACCACTGGGGTACCCTTTACTGAGATGCTTTTCTTTGACGACGAGGATAGAAATATTCAAACGGTTTCAAAAATGGGTGTGACAAGCGTTTTAGTTGGTAATGGGGTGAACCTTGGAGCTTTGAGGCAGGGTTTGTCCGAATTTGCTCGAAAGTCAGCTTCATCTAGCAGGAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

172

Amino Acids

19.31

Weight (kDa)

5.92

Isoelectric Point (pI)

56.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	21 - 41	3.2e-06	Acid Phosphatase
Hydrolase	PF00702	36 - 134	6.3e-06	haloacid dehalogenase-like hydrolase
HAD_2	PF13419	46 - 145	9.7e-07	Haloacid dehalogenase-like hydrolase
Acid_PPase	PF12689	49 - 163	2.1e-27	Acid Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	349
AccB1I	GGYRCC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	256
AciI	CCGC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	330, 479
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	398, 408
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	3 cut(s)	458, 497, 513
AluI	AGCT	3 cut(s)	458, 497, 513
Alw26I	GTCTC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	2 cut(s)	330, 479
Asp718I	GGTACC	1 cut(s)	349
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	31, 457
AvaI	CYCGRG	1 cut(s)	160
BaeI	ACNNNNGTAYC	2 cut(s)	333, 366
BanI	GGYRCC	1 cut(s)	349
BbsI	GAAGAC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	284
BciVI	GTATCC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	504, 514
BfmI	CTRYAG	1 cut(s)	35
BfuI	GTATCC	1 cut(s)	272
BglII	AGATCT	1 cut(s)	215
Bme1390I	CCNGG	1 cut(s)	284
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	102
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	284
BmrI	ACTGGG	2 cut(s)	266, 354
BmsI	GCATC	1 cut(s)	354
BmuI	ACTGGG	2 cut(s)	266, 354
BpiI	GAAGAC	1 cut(s)	70
BplI	GAGNNNNNCTC	4 cut(s)	16, 48, 278, 310
BpmI	CTGGAG	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	159, 198, 282, 451
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	3 cut(s)	261, 297, 349
BseBI	CCWGG	1 cut(s)	284
BseDI	CCNNGG	4 cut(s)	159, 198, 282, 451
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	261, 297, 349
BshFI	GGCC	1 cut(s)	103
BshNI	GGYRCC	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	160
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	103
BsoBI	CYCGRG	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	82, 215
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	1 cut(s)	152
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	351
BspMAI	CTGCAG	1 cut(s)	39
BspQI	GCTCTTC	1 cut(s)	17
BspT107I	GGYRCC	1 cut(s)	349
BsrI	ACTGG	3 cut(s)	261, 297, 349
BssECI	CCNNGG	4 cut(s)	159, 198, 282, 451
BssMI	GATC	2 cut(s)	82, 215
BssT1I	CCWWGG	2 cut(s)	198, 451
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	141, 403
Bst6I	CTCTTC	1 cut(s)	17
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	360
BstDSI	CCRYGG	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	85, 218
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	2 cut(s)	82, 215
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	1 cut(s)	282
BstSFI	CTRYAG	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	70
BstX2I	RGATCY	1 cut(s)	215
BstYI	RGATCY	1 cut(s)	215
BsuI	GTATCC	1 cut(s)	272
BsuRI	GGCC	1 cut(s)	103
BtgI	CCRYGG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	102
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	2 cut(s)	199, 335
CviJI	RGCY	7 cut(s)	32, 103, 158, 203, 458, 497, 513
CviKI_1	RGCY	7 cut(s)	32, 103, 158, 203, 458, 497, 513
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	1 cut(s)	360
DpnI	GATC	2 cut(s)	84, 217
DpnII	GATC	2 cut(s)	82, 215
Eam1104I	CTCTTC	1 cut(s)	17
EarI	CTCTTC	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	198, 451
Eco88I	CYCGRG	1 cut(s)	160
EcoRI	GAATTC	1 cut(s)	330
EcoRII	CCWGG	1 cut(s)	282
EcoT14I	CCWWGG	2 cut(s)	198, 451
ErhI	CCWWGG	2 cut(s)	198, 451
FaeI	CATG	2 cut(s)	202, 338
FaiI	YATR	3 cut(s)	174, 200, 336
FatI	CATG	2 cut(s)	198, 334
FauI	CCCGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	504, 514
GlaI	GCGC	1 cut(s)	177
GsuI	CTGGAG	1 cut(s)	280
HaeIII	GGCC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	2 cut(s)	202, 338
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	2 cut(s)	67, 304
HphI	GGTGA	2 cut(s)	31, 457
Hpy166II	GTNNAC	1 cut(s)	448
Hpy188I	TCNGA	2 cut(s)	229, 478
Hpy188III	TCNNGA	3 cut(s)	86, 162, 213
Hpy8I	GTNNAC	1 cut(s)	448
Hpy99I	CGWCG	5 cut(s)	11, 14, 77, 134, 383
HpyAV	CCTTC	2 cut(s)	10, 115
HpyCH4III	ACNGT	2 cut(s)	141, 403
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	2 cut(s)	37, 338
HpyF3I	CTNAG	1 cut(s)	360
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	202, 338
HspAI	GCGC	1 cut(s)	176
KpnI	GGTACC	1 cut(s)	353
Kzo9I	GATC	2 cut(s)	82, 215
LguI	GCTCTTC	1 cut(s)	17
LmnI	GCTCC	2 cut(s)	455, 510
LpnPI	CCDG	9 cut(s)	68, 85, 242, 269, 296, 310, 330, 452, 493
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	2 cut(s)	504, 514
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	418
MalI	GATC	2 cut(s)	84, 217
MboI	GATC	2 cut(s)	82, 215
MboII	GAAGA	3 cut(s)	34, 70, 100
MflI	RGATCY	1 cut(s)	215
MluCI	AATT	2 cut(s)	330, 479
MlyI	GAGTC	2 cut(s)	76, 298
MmeI	TCCRAC	2 cut(s)	245, 281
MnlI	CCTC	6 cut(s)	22, 107, 169, 257, 376, 456
MspR9I	CCNGG	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	284
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	2 cut(s)	82, 215
NlaIII	CATG	2 cut(s)	202, 338
NlaIV	GGNNCC	1 cut(s)	351
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PflMI	CCANNNNNTGG	1 cut(s)	256
PleI	GAGTC	2 cut(s)	75, 298
PpsI	GAGTC	2 cut(s)	75, 298
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	39
PsuI	RGATCY	1 cut(s)	215
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
SapI	GCTCTTC	1 cut(s)	17
Sau3AI	GATC	2 cut(s)	82, 215
Sau96I	GGNCC	1 cut(s)	102
SchI	GAGTC	2 cut(s)	76, 298
ScrFI	CCNGG	1 cut(s)	284
SetI	ASST	6 cut(s)	21, 234, 453, 460, 499, 515
SfaNI	GCATC	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	2 cut(s)	330, 479
SsiI	CCGC	1 cut(s)	152
SspI	AATATT	2 cut(s)	168, 394
SspMI	CTAG	2 cut(s)	504, 514
StyD4I	CCNGG	1 cut(s)	282
StyI	CCWWGG	2 cut(s)	198, 451
TaaI	ACNGT	2 cut(s)	141, 403
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	5 cut(s)	45, 81, 87, 212, 487
TasI	AATT	2 cut(s)	330, 479
TscAI	CASTG	1 cut(s)	349
TseFI	GTSAC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	418
TspDTI	ATGAA	2 cut(s)	323, 489
TspRI	CASTG	1 cut(s)	349
Van91I	CCANNNNNTGG	1 cut(s)	256
XapI	RAATTY	2 cut(s)	330, 479
XspI	CTAG	2 cut(s)	504, 514

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.