Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Reverse (-)

29051029 .. 29053264

Gene Structure 2236 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGATGGTGGCTTGGGTGAAGGAGAGGAGACGAGATAAAGTAATCCCGAGAAAGAGCGAAATGGGGGACGAGAAGGTGAAGGCAGAGGCTTTAGAGTTACTGGGAATGTTCCAAGTGCTTCCCAGATTGGTTGTCTTCGATCTTGATTACACTCTTTGGCCTTTCTATTGCGAATGTCGCTCCAAACGTGACATGCCATCATTGTATCACGATGGAAGAGGCATACTGTATGCATTGAAGGAAAAAGGGATCGATCTTGCCATTGCTTCCAGGTCACCAACTGCAGATATAGCAGAGACATTTCTTGACAAATTGAGCATCAAGTCAATGTTTGTAGCTAAGGAGATCTTTTCAAGTTGGACACACAAGACCGATCATTTCCGGAAAATTCAGTCAAGGACTGGGGTCCCCTTTAATTCAATGCTGTTCTTTGATGATGAGAACAGGAACATCCAAGCGGTTTCAAAGATGGGTGTAACGAGCATTTTGGTAAACGAAGGAGTACATATTGGAGCGTTGAGGCAAGGTCTTACAAAATACTCTGAAAATGTGAACATATCTGAAAAGAACAAGCAGAAATGGCGCACAAAGTTCTCCCAAAATTCAAATTCATCAAAGAAGAATGAGAGTGAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

213

Amino Acids

24.61

Weight (kDa)

9.41

Isoelectric Point (pI)

55.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	40 - 182	1.5e-33	Acid Phosphatase
HAD_2	PF13419	64 - 164	5.1e-08	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	381
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	3 cut(s)	387, 601, 607
AfaI	GTAC	1 cut(s)	504
AgsI	TTSAA	5 cut(s)	238, 354, 420, 465, 606
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	22, 290
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	46
Aor13HI	TCCGGA	1 cut(s)	381
AoxI	GGCC	1 cut(s)	158
ApoI	RAATTY	3 cut(s)	387, 601, 607
AspLEI	GCGC	1 cut(s)	585
AspS9I	GGNCC	1 cut(s)	406
AsuHPI	GGTGA	3 cut(s)	28, 88, 267
AvaI	CYCGRG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	406
BbsI	GAAGAC	1 cut(s)	127
BccI	CCATC	3 cut(s)	205, 206, 463
BciT130I	CCWGG	1 cut(s)	271
BcoDI	GTCTC	2 cut(s)	22, 290
BfmI	CTRYAG	1 cut(s)	282
BglII	AGATCT	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	406
BmiI	GGNNCC	2 cut(s)	407, 408
BmrFI	CCNGG	1 cut(s)	271
BmrI	ACTGGG	2 cut(s)	110, 411
BmsI	GCATC	1 cut(s)	327
BmuI	ACTGGG	2 cut(s)	110, 411
BoxI	GACNNNNGTC	1 cut(s)	404
BpiI	GAAGAC	1 cut(s)	127
Bpu10I	CCTNAGC	1 cut(s)	339
Bsa29I	ATCGAT	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	381
Bse1I	ACTGG	2 cut(s)	105, 406
Bse3DI	GCAATG	1 cut(s)	261
BseAI	TCCGGA	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	252
BseGI	GGATG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	261
BseNI	ACTGG	2 cut(s)	105, 406
BseRI	GAGGAG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	252
BsiHKCI	CYCGRG	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	382
BslFI	GGGAC	2 cut(s)	80, 392
BsmAI	GTCTC	2 cut(s)	22, 290
BsmBI	CGTCTC	1 cut(s)	22
BsmFI	GGGAC	2 cut(s)	80, 392
BsnI	GGCC	1 cut(s)	160
BsoBI	CYCGRG	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	381
Bsp143I	GATC	5 cut(s)	139, 249, 253, 345, 373
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	252
BspEI	TCCGGA	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	407, 408
BspMAI	CTGCAG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	257
BsrDI	GCAATG	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	105, 406
BssMI	GATC	5 cut(s)	139, 249, 253, 345, 373
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	211
BstDEI	CTNAG	1 cut(s)	339
BstEII	GGTNACC	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	450
BstHHI	GCGC	1 cut(s)	585
BstKTI	GATC	5 cut(s)	142, 252, 256, 348, 376
BstMAI	GTCTC	2 cut(s)	22, 290
BstMBI	GATC	5 cut(s)	139, 249, 253, 345, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 290, 580
BstNI	CCWGG	1 cut(s)	271
BstNSI	RCATGY	1 cut(s)	196
BstPAI	GACNNNNGTC	1 cut(s)	404
BstPI	GGTNACC	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	282
BstV2I	GAAGAC	1 cut(s)	127
BstX2I	RGATCY	1 cut(s)	345
BstYI	RGATCY	1 cut(s)	345
Bsu15I	ATCGAT	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	450
CfoI	GCGC	1 cut(s)	585
Cfr13I	GGNCC	1 cut(s)	406
ClaI	ATCGAT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	503
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	4 cut(s)	11, 89, 160, 338
CviKI_1	RGCY	4 cut(s)	11, 89, 160, 338
CviQI	GTAC	1 cut(s)	503
DdeI	CTNAG	1 cut(s)	339
DpnI	GATC	5 cut(s)	141, 251, 255, 347, 375
DpnII	GATC	5 cut(s)	139, 249, 253, 345, 373
Eam1104I	CTCTTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	406
Eco88I	CYCGRG	1 cut(s)	46
Eco91I	GGTNACC	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	406
EcoO65I	GGTNACC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	269
EcoT22I	ATGCAT	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	22
FaeI	CATG	1 cut(s)	196
FaiI	YATR	6 cut(s)	194, 224, 231, 290, 507, 557
FalI	AAGNNNNNCTT	2 cut(s)	332, 364
FaqI	GGGAC	2 cut(s)	80, 392
FatI	CATG	1 cut(s)	192
FokI	GGATG	1 cut(s)	437
GlaI	GCGC	1 cut(s)	584
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	382
HhaI	GCGC	1 cut(s)	585
Hin1II	CATG	1 cut(s)	196
Hin6I	GCGC	1 cut(s)	583
HinP1I	GCGC	1 cut(s)	583
HpaII	CCGG	1 cut(s)	382
HphI	GGTGA	3 cut(s)	28, 88, 267
Hpy166II	GTNNAC	2 cut(s)	493, 553
Hpy188I	TCNGA	2 cut(s)	544, 562
Hpy188III	TCNNGA	5 cut(s)	46, 143, 209, 305, 382
Hpy8I	GTNNAC	2 cut(s)	493, 553
HpyAV	CCTTC	5 cut(s)	13, 67, 73, 232, 491
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	233, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 290, 580
HpyF3I	CTNAG	1 cut(s)	339
HpySE526I	ACGT	1 cut(s)	187
Hsp92II	CATG	1 cut(s)	196
HspAI	GCGC	1 cut(s)	583
KflI	GGGWCCC	1 cut(s)	406
Kpn2I	TCCGGA	1 cut(s)	381
Kzo9I	GATC	5 cut(s)	139, 249, 253, 345, 373
LmnI	GCTCC	2 cut(s)	185, 512
LpnPI	CCDG	7 cut(s)	86, 136, 256, 283, 387, 395, 430
LweI	GCATC	1 cut(s)	327
MaeII	ACGT	1 cut(s)	187
MaeIII	GTNAC	4 cut(s)	96, 188, 273, 475
MalI	GATC	5 cut(s)	141, 251, 255, 347, 375
MboI	GATC	5 cut(s)	139, 249, 253, 345, 373
MboII	GAAGA	3 cut(s)	127, 228, 631
MflI	RGATCY	1 cut(s)	345
MluCI	AATT	5 cut(s)	311, 387, 415, 601, 607
MmeI	TCCRAC	1 cut(s)	338
MnlI	CCTC	4 cut(s)	18, 79, 212, 513
Mph1103I	ATGCAT	1 cut(s)	235
MroI	TCCGGA	1 cut(s)	381
MseI	TTAA	1 cut(s)	414
MspI	CCGG	1 cut(s)	382
MspR9I	CCNGG	1 cut(s)	271
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	3 cut(s)	177, 290, 580
NdeII	GATC	5 cut(s)	139, 249, 253, 345, 373
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	2 cut(s)	407, 408
NmuCI	GTSAC	2 cut(s)	188, 273
NsiI	ATGCAT	1 cut(s)	235
NspI	RCATGY	1 cut(s)	196
PcsI	WCGNNNNNNNCGW	1 cut(s)	184
PpuMI	RGGWCCY	1 cut(s)	406
PshAI	GACNNNNGTC	1 cut(s)	404
Psp5II	RGGWCCY	1 cut(s)	406
Psp6I	CCWGG	1 cut(s)	269
PspEI	GGTNACC	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	2 cut(s)	407, 408
PspPI	GGNCC	1 cut(s)	406
PspPPI	RGGWCCY	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	286
PsuI	RGATCY	1 cut(s)	345
RsaI	GTAC	1 cut(s)	504
RsaNI	GTAC	1 cut(s)	503
SaqAI	TTAA	1 cut(s)	414
Sau3AI	GATC	5 cut(s)	139, 249, 253, 345, 373
Sau96I	GGNCC	1 cut(s)	406
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	5 cut(s)	78, 190, 275, 340, 529
SfaNI	GCATC	1 cut(s)	327
SfcI	CTRYAG	1 cut(s)	282
SinI	GGWCC	1 cut(s)	406
Sse9I	AATT	5 cut(s)	311, 387, 415, 601, 607
SsiI	CCGC	1 cut(s)	458
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	138, 252
TaqII	GACCGA	1 cut(s)	386
TasI	AATT	5 cut(s)	311, 387, 415, 601, 607
TatI	WGTACW	1 cut(s)	502
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseFI	GTSAC	2 cut(s)	188, 273
Tsp45I	GTSAC	2 cut(s)	188, 273
TspDTI	ATGAA	1 cut(s)	600
VpaK11BI	GGWCC	1 cut(s)	406
XapI	RAATTY	3 cut(s)	387, 601, 607
XceI	RCATGY	1 cut(s)	196
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.