Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Forward (+)

8098424 .. 8100515

Gene Structure 2092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1047400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGGTGACGATAAGGTGAAGGCAGATGCTTTAGAGATATTGGGAATGTTCCAAGTGCTTCCGCGATTGGTTGTCTTTGATCTTGATTACACTCTCTGGCCTTTCTATTGTGAATGTCGCTCCAAACGTGAAATGCCATCGATGTATCCCCATGCCAGAGGAGTATTGTATGCACTGAAAGAAAAAGGAATTGGCCTTGCCATTGCTTCTAGGTCACCAACTGCGGATATAGCAAAGACTTTTATTGAAAAATTGAGTATCAAGTCGATGTTCGCAGCCCAGGAGATTTTTTCGAGTTGGACACACAAGACGGACCATTTTCAGCGAATTCATACAAGGACCGGGGTCCCCTTCAACTCAATGCTTTTCTTTGATGACGAAAATAGGAACATCCAAGCGGTTTCAAAGATGGGCGTAACAAGCATTTTGGTGGATAATGGGGTAAACATTGGAGCGTTGAGGCAGGGTCTTACTAAATACACCGAAAATGTGAATACATCTGAGAAGAACAAGCAGAAATGGCGCACGAAATTCTCCAAAGGTTCAAGTTCATCTGAAAAGAACGAGGAGAATTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

193

Amino Acids

21.8

Weight (kDa)

9.17

Isoelectric Point (pI)

54.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	20 - 41	1.3e-06	Acid Phosphatase
HAD_2	PF13419	42 - 144	1.1e-09	Haloacid dehalogenase-like hydrolase
Acid_PPase	PF12689	47 - 162	4.6e-28	Acid Phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	64
AciI	CCGC	3 cut(s)	62, 224, 398
AcsI	RAATTY	3 cut(s)	327, 530, 571
AgsI	TTSAA	4 cut(s)	248, 355, 405, 546
AjnI	CCWGG	1 cut(s)	279
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AoxI	GGCC	2 cut(s)	98, 193
ApeKI	GCWGC	1 cut(s)	275
ApoI	RAATTY	3 cut(s)	327, 530, 571
AspLEI	GCGC	1 cut(s)	525
AspS9I	GGNCC	3 cut(s)	313, 339, 346
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	3 cut(s)	17, 28, 207
AvaII	GGWCC	3 cut(s)	313, 339, 346
BbvI	GCAGC	1 cut(s)	287
BccI	CCATC	2 cut(s)	145, 403
BciT130I	CCWGG	1 cut(s)	281
BciVI	GTATCC	1 cut(s)	156
BcnI	CCSGG	1 cut(s)	343
BfaI	CTAG	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	156
BisI	GCNGC	1 cut(s)	276
BlsI	GCNGC	1 cut(s)	277
Bme1390I	CCNGG	2 cut(s)	281, 343
Bme18I	GGWCC	3 cut(s)	313, 339, 346
BmgT120I	GGNCC	3 cut(s)	313, 339, 346
BmiI	GGNNCC	2 cut(s)	347, 348
BmrFI	CCNGG	2 cut(s)	281, 343
BmsI	GCATC	1 cut(s)	16
BoxI	GACNNNNGTC	1 cut(s)	344
BpuMI	CCSGG	1 cut(s)	343
Bsa29I	ATCGAT	1 cut(s)	140
BsaJI	CCNNGG	2 cut(s)	279, 342
Bse3DI	GCAATG	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	281
BseCI	ATCGAT	1 cut(s)	140
BseDI	CCNNGG	2 cut(s)	279, 342
BseGI	GGATG	1 cut(s)	390
BseMI	GCAATG	1 cut(s)	201
BseMII	CTCAG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	64
BshFI	GGCC	2 cut(s)	100, 195
BshVI	ATCGAT	1 cut(s)	140
BsiSI	CCGG	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	100, 195
Bsp143I	GATC	1 cut(s)	79
BspACI	CCGC	3 cut(s)	62, 224, 398
BspANI	GGCC	2 cut(s)	100, 195
BspCNI	CTCAG	1 cut(s)	493
BspDI	ATCGAT	1 cut(s)	140
BspFNI	CGCG	1 cut(s)	64
BspLI	GGNNCC	2 cut(s)	347, 348
BsrDI	GCAATG	1 cut(s)	201
BssECI	CCNNGG	2 cut(s)	279, 342
BssMI	GATC	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	501
BstEII	GGTNACC	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	64
BstHHI	GCGC	1 cut(s)	525
BstKTI	GATC	1 cut(s)	82
BstMBI	GATC	1 cut(s)	79
BstMWI	GCNNNNNNNGC	3 cut(s)	230, 420, 520
BstNI	CCWGG	1 cut(s)	281
BstPAI	GACNNNNGTC	1 cut(s)	344
BstPI	GGTNACC	1 cut(s)	213
BstSCI	CCNGG	2 cut(s)	279, 341
BstUI	CGCG	1 cut(s)	64
BstV1I	GCAGC	1 cut(s)	287
Bsu15I	ATCGAT	1 cut(s)	140
BsuI	GTATCC	1 cut(s)	156
BsuRI	GGCC	2 cut(s)	100, 195
BsuTUI	ATCGAT	1 cut(s)	140
BtsCI	GGATG	1 cut(s)	390
BtsIMutI	CAGTG	1 cut(s)	173
CfoI	GCGC	1 cut(s)	525
Cfr13I	GGNCC	3 cut(s)	313, 339, 346
ClaI	ATCGAT	1 cut(s)	140
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	3 cut(s)	100, 195, 278
CviKI_1	RGCY	3 cut(s)	100, 195, 278
DdeI	CTNAG	1 cut(s)	501
DpnI	GATC	1 cut(s)	81
DpnII	GATC	1 cut(s)	79
Eco47I	GGWCC	3 cut(s)	313, 339, 346
Eco91I	GGTNACC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	346
EcoO65I	GGTNACC	1 cut(s)	213
EcoRI	GAATTC	2 cut(s)	327, 571
EcoRII	CCWGG	1 cut(s)	279
FaeI	CATG	1 cut(s)	155
FaiI	YATR	5 cut(s)	153, 171, 230, 333, 577
FaqI	GGGAC	1 cut(s)	332
FatI	CATG	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	276
FokI	GGATG	1 cut(s)	377
Fsp4HI	GCNGC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	210
GlaI	GCGC	1 cut(s)	524
GluI	GCNGC	1 cut(s)	276
HaeIII	GGCC	2 cut(s)	100, 195
HapII	CCGG	1 cut(s)	342
HhaI	GCGC	1 cut(s)	525
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	523
HinP1I	GCGC	1 cut(s)	523
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	3 cut(s)	17, 28, 207
Hpy166II	GTNNAC	1 cut(s)	445
Hpy188I	TCNGA	2 cut(s)	502, 556
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	1 cut(s)	445
HpyAV	CCTTC	2 cut(s)	13, 361
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	3 cut(s)	230, 420, 520
HpyF3I	CTNAG	1 cut(s)	501
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	523
KflI	GGGWCCC	1 cut(s)	346
Kzo9I	GATC	1 cut(s)	79
LmnI	GCTCC	2 cut(s)	125, 452
LpnPI	CCDG	6 cut(s)	82, 169, 266, 293, 355, 449
Lsp1109I	GCAGC	1 cut(s)	287
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	210
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	3 cut(s)	5, 213, 415
MalI	GATC	1 cut(s)	81
MboI	GATC	1 cut(s)	79
MboII	GAAGA	1 cut(s)	517
MluCI	AATT	5 cut(s)	189, 251, 327, 530, 571
MmeI	TCCRAC	1 cut(s)	278
MnlI	CCTC	3 cut(s)	152, 453, 559
MslI	CAYNNNNRTG	1 cut(s)	428
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	281, 343
MvaI	CCWGG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	64
MwoI	GCNNNNNNNGC	3 cut(s)	230, 420, 520
NciI	CCSGG	1 cut(s)	343
NdeII	GATC	1 cut(s)	79
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	347, 348
NmuCI	GTSAC	2 cut(s)	5, 213
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PkrI	GCNGC	1 cut(s)	277
PpuMI	RGGWCCY	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	344
Psp5II	RGGWCCY	1 cut(s)	346
Psp6I	CCWGG	1 cut(s)	279
PspEI	GGTNACC	1 cut(s)	213
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	347, 348
PspPI	GGNCC	3 cut(s)	313, 339, 346
PspPPI	RGGWCCY	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	428
SatI	GCNGC	1 cut(s)	276
Sau3AI	GATC	1 cut(s)	79
Sau96I	GGNCC	3 cut(s)	313, 339, 346
ScrFI	CCNGG	2 cut(s)	281, 343
SetI	ASST	4 cut(s)	18, 130, 215, 544
SfaNI	GCATC	1 cut(s)	16
SinI	GGWCC	3 cut(s)	313, 339, 346
SmiMI	CAYNNNNRTG	1 cut(s)	428
Sse9I	AATT	5 cut(s)	189, 251, 327, 530, 571
SsiI	CCGC	3 cut(s)	62, 224, 398
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	2 cut(s)	279, 341
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	3 cut(s)	140, 266, 293
TasI	AATT	5 cut(s)	189, 251, 327, 530, 571
TscAI	CASTG	1 cut(s)	180
TseFI	GTSAC	2 cut(s)	5, 213
TseI	GCWGC	1 cut(s)	275
Tsp45I	GTSAC	2 cut(s)	5, 213
TspDTI	ATGAA	3 cut(s)	320, 540, 564
TspGWI	ACGGA	1 cut(s)	326
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	3 cut(s)	313, 339, 346
XapI	RAATTY	3 cut(s)	327, 530, 571
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.