Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004104

Physical Location & Seq

Genomic Coordinates Forward (+)

25147772 .. 25149051

Gene Structure 1280 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002077

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCCATCATTGTATCCCCAGGCTAGAGGCATACTGTATGCATTGAAGGAAAGAGGGATCGATCTTGCCATTGCTTCCAGGTCACCAACTCCAGATATAGCAAAGACATCTCTTGACAAATTGAGTATCAAGTCAATGTTTGTAGCTCAGTTGGCACACAAGACCGATCATTTCCAGAAAATTCACTCAAGGACTGGGGTCCCCTGTAATTCAATGCTTTTCTTTGATGATGAGAACAGGAACATCCAAGCGGTTTCAAAGATGGGTGTAACGAGCATTTTGGTAAACAAAGGAGTAAATGTTGGAGCGTTGAGGCAAGGTCTTACAAAATACTCTGAAAATGTGAACATCTCTGAAAAGAACAAGCAGAAATGGCGCACAAAGTTCTCCCAAAGTTCAAATTCATCAAAGAAGAATGAGAATGAAGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006040 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030389 GO:0042578 GO:0044237 GO:0071704 GO:1901135

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acid_PPase

Protein Analysis

145

Amino Acids

16.11

Weight (kDa)

9.87

Isoelectric Point (pI)

51.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acid_PPase	PF12689	3 - 113	1.9e-26	Acid Phosphatase
HAD_2	PF13419	3 - 95	2.2e-06	Haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004104)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G14110 AT2G14110
fragaria_vesca	FvH4_1g19640 FvH4_2g11710
malus_domestica	MD01G1039300.v1.1 MD05G1047400.v1.1
prunus_persica	Prupe.6G201600_v2.0.a1 Prupe.8G069800_v2.0.a1
pyrus_communis	pycom01g06700 pycom05g03940
rosa_chinensis	RchiOBHm_Chr2g0111211 RchiOBHm_Chr6g0271011
rosa_laevigata	RLG00000002077 RLG00000013753 RLG00000017874
rosa_multiflora	Rmu_sc0003055.1_g000002 Rmu_sc0010074.1_g000001
rosa_roxburghii	Rroxscaffold_2G00132620 Rroxscaffold_7G00197430
rosa_rugosa	Rorug02G0171600 Rorug07G0206900 Rorug07G0207000
rosa_samantha	Rh2AG224700 Rh2BG236500 Rh2CG227700 Rh2DG232300 Rh6AG177400 Rh6AG177500 Rh6CG176800 Rh6DG169000 Rh7BG339100
rosa_wichuraiana	Rw2G017350 Rw6G015130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	65
AcsI	RAATTY	2 cut(s)	180, 400
AgsI	TTSAA	4 cut(s)	46, 213, 258, 399
AjnI	CCWGG	2 cut(s)	18, 77
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	1 cut(s)	65
ApoI	RAATTY	2 cut(s)	180, 400
AspLEI	GCGC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	199
AsuHPI	GGTGA	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	199
BccI	CCATC	2 cut(s)	13, 256
BciT130I	CCWGG	2 cut(s)	20, 79
BciVI	GTATCC	1 cut(s)	24
BfaI	CTAG	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	24
Bme1390I	CCNGG	2 cut(s)	20, 79
Bme18I	GGWCC	1 cut(s)	199
BmgT120I	GGNCC	1 cut(s)	199
BmiI	GGNNCC	2 cut(s)	200, 201
BmrFI	CCNGG	2 cut(s)	20, 79
BmrI	ACTGGG	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	197
BpmI	CTGGAG	1 cut(s)	75
BpuEI	CTTGAG	1 cut(s)	172
Bsa29I	ATCGAT	1 cut(s)	60
BsaJI	CCNNGG	1 cut(s)	18
BsaXI	ACNNNNNCTCC	2 cut(s)	285, 315
Bse1I	ACTGG	1 cut(s)	199
Bse3DI	GCAATG	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	20, 79
BseCI	ATCGAT	1 cut(s)	60
BseDI	CCNNGG	1 cut(s)	18
BseGI	GGATG	1 cut(s)	243
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	1 cut(s)	161
BseNI	ACTGG	1 cut(s)	199
BshVI	ATCGAT	1 cut(s)	60
BslFI	GGGAC	1 cut(s)	185
BsmFI	GGGAC	1 cut(s)	185
Bsp143I	GATC	3 cut(s)	57, 61, 166
BspACI	CCGC	1 cut(s)	251
BspCNI	CTCAG	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	60
BspLI	GGNNCC	2 cut(s)	200, 201
BspPI	GGATC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	18
BssMI	GATC	3 cut(s)	57, 61, 166
Bst2UI	CCWGG	2 cut(s)	20, 79
Bst4CI	ACNGT	1 cut(s)	36
BstDEI	CTNAG	1 cut(s)	147
BstEII	GGTNACC	1 cut(s)	81
BstF5I	GGATG	1 cut(s)	243
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	3 cut(s)	60, 64, 169
BstMBI	GATC	3 cut(s)	57, 61, 166
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 373
BstNI	CCWGG	2 cut(s)	20, 79
BstPAI	GACNNNNGTC	1 cut(s)	197
BstPI	GGTNACC	1 cut(s)	81
BstSCI	CCNGG	2 cut(s)	18, 77
Bsu15I	ATCGAT	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	24
BsuTUI	ATCGAT	1 cut(s)	60
BtsCI	GGATG	1 cut(s)	243
CfoI	GCGC	1 cut(s)	378
Cfr13I	GGNCC	1 cut(s)	199
ClaI	ATCGAT	1 cut(s)	60
CviJI	RGCY	2 cut(s)	23, 146
CviKI_1	RGCY	2 cut(s)	23, 146
DdeI	CTNAG	1 cut(s)	147
DpnI	GATC	3 cut(s)	59, 63, 168
DpnII	GATC	3 cut(s)	57, 61, 166
Eco47I	GGWCC	1 cut(s)	199
Eco91I	GGTNACC	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	199
EcoO65I	GGTNACC	1 cut(s)	81
EcoRII	CCWGG	2 cut(s)	18, 77
EcoT22I	ATGCAT	1 cut(s)	43
FaiI	YATR	3 cut(s)	32, 39, 98
FaqI	GGGAC	1 cut(s)	185
FokI	GGATG	1 cut(s)	230
FspBI	CTAG	1 cut(s)	24
GlaI	GCGC	1 cut(s)	377
GsuI	CTGGAG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	378
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HphI	GGTGA	1 cut(s)	75
Hpy166II	GTNNAC	2 cut(s)	286, 346
Hpy188I	TCNGA	2 cut(s)	337, 355
Hpy188III	TCNNGA	3 cut(s)	92, 113, 175
Hpy8I	GTNNAC	2 cut(s)	286, 346
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	36
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 373
HpyF3I	CTNAG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	376
KflI	GGGWCCC	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	57, 61, 166
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	9 cut(s)	5, 32, 64, 91, 105, 180, 188, 217, 223
MaeI	CTAG	1 cut(s)	24
MaeIII	GTNAC	2 cut(s)	81, 268
MalI	GATC	3 cut(s)	59, 63, 168
MboI	GATC	3 cut(s)	57, 61, 166
MboII	GAAGA	1 cut(s)	424
MluCI	AATT	4 cut(s)	119, 180, 208, 400
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	3 cut(s)	20, 47, 306
Mph1103I	ATGCAT	1 cut(s)	43
MspR9I	CCNGG	2 cut(s)	20, 79
MvaI	CCWGG	2 cut(s)	20, 79
MwoI	GCNNNNNNNGC	2 cut(s)	152, 373
NdeII	GATC	3 cut(s)	57, 61, 166
NlaIV	GGNNCC	2 cut(s)	200, 201
NmuCI	GTSAC	1 cut(s)	81
NsiI	ATGCAT	1 cut(s)	43
PpuMI	RGGWCCY	1 cut(s)	199
PshAI	GACNNNNGTC	1 cut(s)	197
Psp5II	RGGWCCY	1 cut(s)	199
Psp6I	CCWGG	2 cut(s)	18, 77
PspEI	GGTNACC	1 cut(s)	81
PspGI	CCWGG	2 cut(s)	18, 77
PspN4I	GGNNCC	2 cut(s)	200, 201
PspPI	GGNCC	1 cut(s)	199
PspPPI	RGGWCCY	1 cut(s)	199
Sau3AI	GATC	3 cut(s)	57, 61, 166
Sau96I	GGNCC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	20, 79
SetI	ASST	3 cut(s)	83, 148, 322
SinI	GGWCC	1 cut(s)	199
SmlI	CTYRAG	1 cut(s)	187
SmoI	CTYRAG	1 cut(s)	187
Sse9I	AATT	4 cut(s)	119, 180, 208, 400
SsiI	CCGC	1 cut(s)	251
SspMI	CTAG	1 cut(s)	24
StyD4I	CCNGG	2 cut(s)	18, 77
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	179
TasI	AATT	4 cut(s)	119, 180, 208, 400
TseFI	GTSAC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	81
TspDTI	ATGAA	1 cut(s)	393
VpaK11BI	GGWCC	1 cut(s)	199
XapI	RAATTY	2 cut(s)	180, 400
XspI	CTAG	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.