Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0001181

Physical Location & Seq

Genomic Coordinates Reverse (-)

11945507 .. 11950390

Gene Structure 4884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19730.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3240 bp

ATGGCCGATCGGAAAGGTAATGTGAAGCCTGCGAATGGGAAGGCATCTGGAACTACGGCGGGGAGCTCCAGTGCATATGTGATTGATGTTAATAACTTCAGCAAGCGGCTGAAGCTGTTGTATACGCATTGGGATGAACACCACAGTGGTCTATGGGGTAACTCGGATGTGCTTGCTATTGCAACTCCTCCGACTTCAGATGATCTGCGGTACCTGAAGTCGTCGGCGTTGAATATCTGGTTGGTGGGGTTTGAGTTCCCGGATACTATCATGGTGTTCACGAAGAAGCAGATCCATGTTTTGTGTAGCCAGAAGAAGGCCTCTCTGCTGGATATTGTGAAGAAGCCTGCGAAAGAGGCGGTTGGTGTTGAAGTTGTGATGCATGTGAAGCTCAAGAGTCAGGATGGAACGGGGATGATGGATAGCATTTTTCAAGCTGTGAAGGCCCAATCGAGCTCTAGTAGTAGATCTAACCCTGTTGTTGGACACATAGCAAGAGAGGCTCCGGAAGGGAAGCTTTTGGAGACTTGGATGGACAAGTTGAATAATGCTAATTTCGAGTTAGCTGATGTAACAAATGGGTTCTCAGACTTATTTTCTGTCAAAGACTCCTCTGAGCTGACGAATGTGAAGAAAGCTGCATTCTTGACTTCTTCGGTGATGAGGAGTTTTGTGGTACCTAAGCTTGAAAAAGTCATTGATGAGGAGAAGAAAATTTCACATTCGTCACTGATGGATGAAACAGAAAAGACCATAGTGGAACCTGCAAGAATTAAGGTGAAGCTGAAGGCAGACAATGTTGATATTTGTTATCCTCCAATTTTCCAGAGTGGCGGAGGATTTGATCTAAAACCAAGTGCTTCAAGCAATGATGAGAATCTTTGCTATGACTCTACCAGTGTAATTATATGTGCTGTTGGATCACGGTACAACAGCTACTGCTCAAATGTTGCTCGAACGTTTCTGATTGATGCGAATTCTACACAGAGCAAAGCTTATGAGGTTCTGCTTAAAGCTCAAGAAGCAGCAATTAGTAAATTGAAATCTGGGAACAAGTTATGTGCCGCATACCAAGCTGCAGTTTCAGTAGTTGAAAAGGAGGCTCCAGAGTTGGCTGGGAACTTGACTAAAACAGCAGGAACTGGAATTGGCCTTGAGTTTCGTGAGTCCGGTCTTAATCTGAATGCCAAGAATGATCGGATTTTCAAACAAGGCATGGTTTTCAACGTGTCTCTTGGTTTTCAGAACTTGCAGGCACAAACAAAAAACCCAAAGACCCAGATATTTTCACTATTATTAGCAGATACAGTTATTGTTGGTAAAGAGAGCCCTGAAATTTTGACTAATGTAAGCTCTAAAGCTGTGAAGGATGTGGCTTACTCATTCAATGATGATGACGATGTTGAAGAAGAGAGGACAAAAATCAAAGCCGGTAATAAAACTCCTGGGAGTACCAAGAGTAAGGCCACACTTAGGTCAGACAACCATGAAATGTCAAAGGAAGAAATACGGAGGCAGCATCAGGCAGAACTTGCCCGCCAAAAGAATGAAGAAACTGCTAGGAGGCTTGCTGGTGGGGATTCTGCAGCAACAAACAATCGTGGTGCTGGCAAGACAATTGGTGATCTGATTGCATATAAGAATGTCAATGATCTGGCTCCTCCAAGAGAGTTAATGATTCAGGTTGATCAGAAAAATGAAGCCATCCTCGTGCCGGTTTATGGAAACATGGTTCCTTTCCATGTAGCCACCGTGAAGAGTGTTTCCAGCCATCAGGACACTACCCAGGACAGTAACCGAAATTGCTACATCCGTATAATCTTTAATGTACCTGGCACTCCATTTACTCCTCATGATGCAAATTCCCTCAAGTTTCAAGGATCAATTTATTTGAAGGAAGTTTCGTTCCGCTCTAAAGACCAAAGGCATATAAGTGAAGTAGTACAGCTTATTAAAACCCTTCGCCGCCAGGTTGCCTCAAGGGAGTCTGAAAGAGCTGAGAGGGCAACTTTAGTTACACAGGAAAAGCTCCAACTAGCCGGAGCCAAATTCAAGCCAAAGAGATTGCCTGATCTAGAGATTCGTCCCAGTTTTGGTGGTCGTGCTAGAAAGCTCACAGGATCATTGGAAGCCCATGCAAATGGGTTACGGTATACTACTTCAAGGTCTGATCAGCGTGTGGACGTTATGTTTAGCAATATCAAACATGCATTTTTCCAGCCAGCAGAGAGGGAAATGATTACCTTGGTCCACTTTCATCTGCACAATCACATTATGGTGGGAAACAAAAAGACCAAGGATGTACAATTTTATACAGAAGTGATGGATGTAGTCCAGACACTTGGTGGTGGAAAGAGGTCTGCCTATGATCCTGATGAGATTGAGGAAGAGCATCGTGAGAGACAACGAAAGAACAAAATTAATATGGAGTTCCAGAACTTCGTGAACCGAGTAAATGATTTGTGGGGGCAACCTGAGTTCAAATCTCTTGACCTCGAGTTTGATCAGCCCCTTAGAGAGCTTGGCTTCAATGGAGTACCTCATAAATCCTCATGTTTCATCGTCCCAACTTCAAGCTGCCTGGTGGAGCTGATAGAGACACCGTTTGTGGTAATTACTCTAAGTGAGATTGAAATAGTGAACCTTGAAAGAGTTGGTCTAGGGCAAAAAAACTTTGATTTGACTATTGTATTCAAGGACTTCAAGCGGGATGTATTTAGAATTGATTCCATCCCATCAACATCACTAGATGGCATCAAGGAGTGGTTAGACACAACTGATCTCAAGTATTATGAGAGCAGGTTGAATCTTAATTGGCGGCCTATACTGAAGACCATTACCGATGACCCTGAAAAGTTCATAGAAGACGGTGGATGGGAATTCTTGAACTTGGAGGTGAGTGATTCTGATTCTGACAATTCTCAGGAGTCAGACCAAGGGTATGTGCCTTCAGATGTACAGTCAGAATCAGGTTCAGAAGATGAGGATGATGAGAGTGAGTCATTGGTGGAGTCCGAGGATGATGAGGAAGAAGAGTCTGGAGAAGACTCGGAAGAGGAAGAGGGAAAGACATGGGAAGAGTTGGAGAGGGAAGCGACCCATGCAGACAGGGAAAAAGGAAATGACTCCGACAGTGAAGAGGAGAGGGCAAGAAGGAAGGTGAAGTCTTTTGGAAAATCTCGGGTACCAGACAAGAGAAACCTTGGTGGCAGCCTTCCTAAGAGGCCCAAATTTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

1080

Amino Acids

120.67

Weight (kDa)

5.73

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FACT-Spt16_Nlob	PF14826	28 - 194	1.8e-47	FACT complex subunit SPT16 N-terminal lobe domain
Peptidase_M24	PF00557	210 - 439	4.1e-28	Metallopeptidase family M24
SPT16	PF08644	560 - 677	4.1e-35	FACT complex subunit (SPT16/CDC68)
PH_SPT16	PF24824	688 - 818	5.3e-54	FACT complex subunit SPT16 PH-like domain
Rttp106-like_middle	PF08512	845 - 932	1.5e-23	Histone chaperone Rttp106-like, middle domain
SPT16_C	PF21091	971 - 1053	3.6e-17	FACT complex subunit SPT16, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001181)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G10710 AT4G10710 AT4G10710
fragaria_vesca	FvH4_1g19730 FvH4_1g19730 FvH4_1g19730 FvH4_6g08280
malus_domestica	MD04G1188700.v1.1 MD04G1188800.v1.1 MD12G1201500.v1.1 MD12G1201600.v1.1
prunus_persica	Prupe.6G306600_v2.0.a1 Prupe.6G306700_v2.0.a1 Prupe.6G306700_v2.0.a1
pyrus_communis	pycom04g16700 pycom12g18760 pycom12g18770 pycom12g18790
rosa_chinensis	RchiOBHm_Chr2g0111311 RchiOBHm_Chr3g0458161 RchiOBHm_Chr3g0460191
rosa_laevigata	RLG00000017884 RLG00000025036 RLG00000025174
rosa_multiflora	Rmu_co8443511.1_g000001 Rmu_sc0000449.1_g000044 Rmu_sc0001363.1_g000004 Rmu_sc0003763.1_g000005 Rmu_sc0005033.1_g000004 Rmu_sc0019318.1_g000002
rosa_roxburghii	Rroxscaffold_2G00132510 Rroxscaffold_6G00419750 Rroxscaffold_6G00421250
rosa_rugosa	Rorug02G0172800 Rorug02G0172800 Rorug03G0025200 Rorug03G0040700 Rorug03G0040800 Rorug03G0040900 Rorug03G0041000 Rorug03G0041000 Rorug03G0041100
rosa_samantha	Rh2AG225800 Rh2BG237500 Rh2CG228800 Rh2DG233300 Rh3AG086000 Rh3AG098500 Rh3BG088700 Rh3BG101700 Rh3CG089300 Rh3CG103800 Rh3DG089700 Rh3DG103000
rosa_wichuraiana	Rw2G017430 Rw3G007300 Rw3G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	772, 2790
Acc65I	GGTACC	3 cut(s)	210, 676, 3184
AccB1I	GGYRCC	3 cut(s)	210, 676, 3184
AccBSI	CCGCTC	1 cut(s)	1911
AccI	GTMKAC	2 cut(s)	122, 2153
AccIII	TCCGGA	1 cut(s)	505
AclI	AACGTT	1 cut(s)	959
AclWI	GGATC	5 cut(s)	286, 928, 1888, 2128, 2363
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	7 cut(s)	714, 976, 1335, 1861, 2048, 2879, 3230
AcuI	CTGAAG	7 cut(s)	82, 131, 180, 236, 806, 2849, 2934
AdeI	CACNNNGTG	1 cut(s)	2345
AfiI	CCNNNNNNNGG	8 cut(s)	35, 316, 482, 1473, 1714, 1721, 2093, 3234
AflIII	ACRYGT	1 cut(s)	1227
AjnI	CCWGG	5 cut(s)	1444, 1785, 1831, 1968, 2580
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AleI	CACNNNNGTG	1 cut(s)	144
AloI	GAACNNNNNNTCC	4 cut(s)	1716, 1748, 1889, 1921
Alw21I	GWGCWC	2 cut(s)	68, 458
Alw26I	GTCTC	4 cut(s)	518, 1236, 2395, 2591
AlwI	GGATC	5 cut(s)	286, 928, 1888, 2128, 2363
AlwNI	CAGNNNCTG	2 cut(s)	939, 1142
Ama87I	CYCGRG	2 cut(s)	2495, 3180
Aor13HI	TCCGGA	1 cut(s)	505
AoxI	GGCC	7 cut(s)	3, 318, 444, 1150, 1464, 2819, 3224
ApeKI	GCWGC	7 cut(s)	638, 1025, 1076, 1516, 1586, 2577, 3210
ApoI	RAATTY	7 cut(s)	714, 976, 1335, 1861, 2048, 2879, 3230
ArsI	GACNNNNNNTTYG	2 cut(s)	2483, 2515
AseI	ATTAAT	1 cut(s)	2421
Asp700I	GAANNNNTTC	1 cut(s)	2725
Asp718I	GGTACC	3 cut(s)	210, 676, 3184
AspS9I	GGNCC	3 cut(s)	445, 2248, 3225
AsuC2I	CCSGG	1 cut(s)	260
AsuHPI	GGTGA	5 cut(s)	670, 790, 1634, 2908, 3172
AvaI	CYCGRG	2 cut(s)	2495, 3180
AvaII	GGWCC	1 cut(s)	2248
BanI	GGYRCC	3 cut(s)	210, 676, 3184
BanII	GRGCYC	3 cut(s)	68, 458, 1331
BauI	CACGAG	1 cut(s)	1709
BbsI	GAAGAC	3 cut(s)	2837, 2871, 3051
Bbv12I	GWGCWC	2 cut(s)	68, 458
BbvI	GCAGC	7 cut(s)	625, 1037, 1063, 1528, 1598, 2564, 3222
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	5 cut(s)	1446, 1787, 1833, 1970, 2582
BciVI	GTATCC	1 cut(s)	256
BclI	TGATCA	3 cut(s)	1687, 2170, 2503
BcnI	CCSGG	1 cut(s)	260
BcoDI	GTCTC	4 cut(s)	518, 1236, 2395, 2591
BfaI	CTAG	7 cut(s)	459, 1560, 2036, 2075, 2106, 2660, 2747
BfmI	CTRYAG	2 cut(s)	1077, 1584
BfuAI	ACCTGC	2 cut(s)	772, 2790
BfuI	GTATCC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	467
Bme1390I	CCNGG	6 cut(s)	260, 1446, 1787, 1833, 1970, 2582
Bme18I	GGWCC	1 cut(s)	2248
BmeT110I	CYCGRG	2 cut(s)	2495, 3180
BmgT120I	GGNCC	3 cut(s)	445, 2248, 3225
BmiI	GGNNCC	9 cut(s)	212, 504, 678, 762, 1104, 1659, 1734, 2044, 3186
BmrFI	CCNGG	6 cut(s)	260, 1446, 1787, 1833, 1970, 2582
BmrI	ACTGGG	1 cut(s)	2082
BmsI	GCATC	7 cut(s)	53, 369, 961, 1528, 1846, 2401, 2763
BmuI	ACTGGG	1 cut(s)	2082
BpiI	GAAGAC	3 cut(s)	2837, 2871, 3051
BpmI	CTGGAG	3 cut(s)	52, 1089, 3060
Bpu10I	CCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	6 cut(s)	377, 1002, 1175, 1853, 1963, 2768
BpuMI	CCSGG	1 cut(s)	260
BsaBI	GATNNNNATC	1 cut(s)	876
BsaJI	CCNNGG	7 cut(s)	1445, 1785, 2244, 2295, 2935, 3015, 3202
BsaWI	WCCGGW	2 cut(s)	505, 1169
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	8 cut(s)	35, 316, 482, 1473, 1714, 1721, 2093, 3234
Bse118I	RCCGGY	2 cut(s)	1430, 1714
Bse1I	ACTGG	4 cut(s)	69, 897, 1147, 2088
Bse3DI	GCAATG	1 cut(s)	874
Bse8I	GATNNNNATC	1 cut(s)	876
BseAI	TCCGGA	1 cut(s)	505
BseBI	CCWGG	5 cut(s)	1446, 1787, 1833, 1970, 2582
BseDI	CCNNGG	7 cut(s)	1445, 1785, 2244, 2295, 2935, 3015, 3202
BseJI	GATNNNNATC	1 cut(s)	876
BseLI	CCNNNNNNNGG	8 cut(s)	35, 316, 482, 1473, 1714, 1721, 2093, 3234
BseMI	GCAATG	1 cut(s)	874
BseMII	CTCAG	5 cut(s)	600, 606, 1989, 2466, 2936
BseNI	ACTGG	4 cut(s)	69, 897, 1147, 2088
BseRI	GAGGAG	7 cut(s)	177, 601, 679, 719, 1650, 1839, 3155
BseXI	GCAGC	7 cut(s)	625, 1037, 1063, 1528, 1598, 2564, 3222
BseYI	CCCAGC	1 cut(s)	1115
BsgI	GTGCAG	1 cut(s)	2246
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	7 cut(s)	5, 320, 446, 1152, 1466, 2821, 3226
BshNI	GGYRCC	3 cut(s)	210, 676, 3184
BsiEI	CGRYCG	1 cut(s)	10
BsiHKAI	GWGCWC	2 cut(s)	68, 458
BsiHKCI	CYCGRG	2 cut(s)	2495, 3180
BsiSI	CCGG	6 cut(s)	260, 506, 1170, 1431, 1715, 2040
BslFI	GGGAC	2 cut(s)	2070, 2549
BslI	CCNNNNNNNGG	8 cut(s)	35, 316, 482, 1473, 1714, 1721, 2093, 3234
BsmAI	GTCTC	4 cut(s)	518, 1236, 2395, 2591
BsmFI	GGGAC	2 cut(s)	2070, 2549
BsmI	GAATGC	2 cut(s)	641, 1189
BsnI	GGCC	7 cut(s)	5, 320, 446, 1152, 1466, 2821, 3226
BsoBI	CYCGRG	2 cut(s)	2495, 3180
Bsp1286I	GDGCHC	3 cut(s)	68, 458, 1331
Bsp13I	TCCGGA	1 cut(s)	505
Bsp1407I	TGTACA	2 cut(s)	2302, 2956
BspANI	GGCC	7 cut(s)	5, 320, 446, 1152, 1466, 2821, 3226
BspCNI	CTCAG	5 cut(s)	599, 607, 1990, 2467, 2935
BspEI	TCCGGA	1 cut(s)	505
BspHI	TCATGA	1 cut(s)	1852
BspLI	GGNNCC	9 cut(s)	212, 504, 678, 762, 1104, 1659, 1734, 2044, 3186
BspMAI	CTGCAG	2 cut(s)	1081, 1588
BspMI	ACCTGC	2 cut(s)	772, 2790
BspPI	GGATC	5 cut(s)	286, 928, 1888, 2128, 2363
BspQI	GCTCTTC	1 cut(s)	2382
BspT107I	GGYRCC	3 cut(s)	210, 676, 3184
BsrBI	CCGCTC	1 cut(s)	1911
BsrDI	GCAATG	1 cut(s)	874
BsrFI	RCCGGY	2 cut(s)	1430, 1714
BsrGI	TGTACA	2 cut(s)	2302, 2956
BsrI	ACTGG	4 cut(s)	69, 897, 1147, 2088
BssAI	RCCGGY	2 cut(s)	1430, 1714
BssECI	CCNNGG	7 cut(s)	1445, 1785, 2244, 2295, 2935, 3015, 3202
BssNAI	GTATAC	2 cut(s)	123, 2154
BssSI	CACGAG	1 cut(s)	1709
BssT1I	CCWWGG	4 cut(s)	2244, 2295, 2935, 3202
Bst1107I	GTATAC	2 cut(s)	123, 2154
Bst2BI	CACGAG	1 cut(s)	1709
Bst2UI	CCWGG	5 cut(s)	1446, 1787, 1833, 1970, 2582
Bst6I	CTCTTC	8 cut(s)	1404, 1751, 2382, 3027, 3048, 3054, 3072, 3132
BstAPI	GCANNNNNTGC	1 cut(s)	1532
BstAUI	TGTACA	2 cut(s)	2302, 2956
BstC8I	GCNNGC	9 cut(s)	30, 104, 174, 348, 1254, 1537, 1569, 1609, 2223
BstMAI	GTCTC	4 cut(s)	518, 1236, 2395, 2591
BstMCI	CGRYCG	1 cut(s)	10
BstNI	CCWGG	5 cut(s)	1446, 1787, 1833, 1970, 2582
BstNSI	RCATGY	2 cut(s)	386, 2210
BstSCI	CCNGG	6 cut(s)	258, 1444, 1785, 1831, 1968, 2580
BstSFI	CTRYAG	2 cut(s)	1077, 1584
BstV1I	GCAGC	7 cut(s)	625, 1037, 1063, 1528, 1598, 2564, 3222
BstV2I	GAAGAC	3 cut(s)	2837, 2871, 3051
BstX2I	RGATCY	2 cut(s)	291, 467
BstXI	CCANNNNNNTGG	2 cut(s)	2141, 2342
BstYI	RGATCY	2 cut(s)	291, 467
BstZ17I	GTATAC	2 cut(s)	123, 2154
BsuI	GTATCC	1 cut(s)	256
BsuRI	GGCC	7 cut(s)	5, 320, 446, 1152, 1466, 2821, 3226
BtsIMutI	CAGTG	5 cut(s)	76, 151, 728, 904, 3139
BveI	ACCTGC	2 cut(s)	772, 2790
Cac8I	GCNNGC	9 cut(s)	30, 104, 174, 348, 1254, 1537, 1569, 1609, 2223
CaiI	CAGNNNCTG	2 cut(s)	939, 1142
CciI	TCATGA	1 cut(s)	1852
Cfr10I	RCCGGY	2 cut(s)	1430, 1714
Cfr13I	GGNCC	3 cut(s)	445, 2248, 3225
DraIII	CACNNNGTG	1 cut(s)	2345
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	8 cut(s)	1404, 1751, 2382, 3027, 3048, 3054, 3072, 3132
EarI	CTCTTC	8 cut(s)	1404, 1751, 2382, 3027, 3048, 3054, 3072, 3132
EciI	GGCGGA	1 cut(s)	849
Ecl136II	GAGCTC	2 cut(s)	66, 456
Eco130I	CCWWGG	4 cut(s)	2244, 2295, 2935, 3202
Eco147I	AGGCCT	1 cut(s)	320
Eco24I	GRGCYC	3 cut(s)	68, 458, 1331
Eco47I	GGWCC	1 cut(s)	2248
Eco53kI	GAGCTC	2 cut(s)	66, 456
Eco57I	CTGAAG	7 cut(s)	82, 131, 180, 236, 806, 2849, 2934
Eco88I	CYCGRG	2 cut(s)	2495, 3180
EcoICRI	GAGCTC	2 cut(s)	66, 456
EcoRI	GAATTC	2 cut(s)	976, 2879
EcoRII	CCWGG	5 cut(s)	1444, 1785, 1831, 1968, 2580
EcoT14I	CCWWGG	4 cut(s)	2244, 2295, 2935, 3202
EcoT22I	ATGCAT	2 cut(s)	384, 2212
EcoT38I	GRGCYC	3 cut(s)	68, 458, 1331
ErhI	CCWWGG	4 cut(s)	2244, 2295, 2935, 3202
FalI	AAGNNNNNCTT	2 cut(s)	501, 533
FaqI	GGGAC	2 cut(s)	2070, 2549
FauI	CCCGC	3 cut(s)	52, 1544, 2700
FauNDI	CATATG	1 cut(s)	76
FbaI	TGATCA	3 cut(s)	1687, 2170, 2503
FblI	GTMKAC	2 cut(s)	122, 2153
FriOI	GRGCYC	3 cut(s)	68, 458, 1331
FspBI	CTAG	7 cut(s)	459, 1560, 2036, 2075, 2106, 2660, 2747
GsaI	CCCAGC	1 cut(s)	1119
GsuI	CTGGAG	3 cut(s)	52, 1089, 3060
HaeIII	GGCC	7 cut(s)	5, 320, 446, 1152, 1466, 2821, 3226
HapII	CCGG	6 cut(s)	260, 506, 1170, 1431, 1715, 2040
HindIII	AAGCTT	3 cut(s)	515, 683, 993
HpaII	CCGG	6 cut(s)	260, 506, 1170, 1431, 1715, 2040
HphI	GGTGA	5 cut(s)	670, 790, 1634, 2908, 3172
Hpy166II	GTNNAC	7 cut(s)	123, 279, 2154, 2182, 2251, 2446, 2641
Hpy8I	GTNNAC	7 cut(s)	123, 279, 2154, 2182, 2251, 2446, 2641
Hpy99I	CGWCG	1 cut(s)	226
HpyCH4IV	ACGT	3 cut(s)	959, 1227, 2184
HpySE526I	ACGT	3 cut(s)	959, 1227, 2184
Kpn2I	TCCGGA	1 cut(s)	505
KpnI	GGTACC	3 cut(s)	214, 680, 3188
Ksp22I	TGATCA	3 cut(s)	1687, 2170, 2503
LguI	GCTCTTC	1 cut(s)	2382
LmnI	GCTCC	8 cut(s)	63, 71, 508, 1108, 1663, 2034, 2042, 2587
Lsp1109I	GCAGC	7 cut(s)	625, 1037, 1063, 1528, 1598, 2564, 3222
LweI	GCATC	7 cut(s)	53, 369, 961, 1528, 1846, 2401, 2763
MaeI	CTAG	7 cut(s)	459, 1560, 2036, 2075, 2106, 2660, 2747
MaeII	ACGT	3 cut(s)	959, 1227, 2184
MaeIII	GTNAC	6 cut(s)	158, 571, 726, 1793, 2014, 2145
MbiI	CCGCTC	1 cut(s)	1911
MfeI	CAATTG	1 cut(s)	1617
MflI	RGATCY	2 cut(s)	291, 467
MhlI	GDGCHC	3 cut(s)	68, 458, 1331
MmeI	TCCRAC	6 cut(s)	215, 463, 898, 2056, 3063, 3153
Mph1103I	ATGCAT	2 cut(s)	384, 2212
MroI	TCCGGA	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	2725
MseI	TTAA	9 cut(s)	90, 774, 1011, 1176, 1673, 1824, 1953, 2421, 2811
MslI	CAYNNNNRTG	6 cut(s)	132, 144, 1709, 1932, 2139, 2276
MspI	CCGG	6 cut(s)	260, 506, 1170, 1431, 1715, 2040
MspR9I	CCNGG	6 cut(s)	260, 1446, 1787, 1833, 1970, 2582
MunI	CAATTG	1 cut(s)	1617
Mva1269I	GAATGC	2 cut(s)	641, 1189
MvaI	CCWGG	5 cut(s)	1446, 1787, 1833, 1970, 2582
NciI	CCSGG	1 cut(s)	260
NdeI	CATATG	1 cut(s)	76
NlaIV	GGNNCC	9 cut(s)	212, 504, 678, 762, 1104, 1659, 1734, 2044, 3186
NmuCI	GTSAC	1 cut(s)	726
NsiI	ATGCAT	2 cut(s)	384, 2212
NspI	RCATGY	2 cut(s)	386, 2210
OliI	CACNNNNGTG	1 cut(s)	144
PaeR7I	CTCGAG	1 cut(s)	2495
PagI	TCATGA	1 cut(s)	1852
PceI	AGGCCT	1 cut(s)	320
PciSI	GCTCTTC	1 cut(s)	2382
PctI	GAATGC	2 cut(s)	641, 1189
PdmI	GAANNNNTTC	1 cut(s)	2725
PfeI	GAWTC	9 cut(s)	877, 1580, 1678, 2080, 2726, 2806, 2903, 2909, 2966
PfoI	TCCNGGA	1 cut(s)	258
Ple19I	CGATCG	1 cut(s)	10
PshBI	ATTAAT	1 cut(s)	2421
Psp124BI	GAGCTC	2 cut(s)	68, 458
Psp1406I	AACGTT	1 cut(s)	959
Psp6I	CCWGG	5 cut(s)	1444, 1785, 1831, 1968, 2580
PspFI	CCCAGC	1 cut(s)	1115
PspGI	CCWGG	5 cut(s)	1444, 1785, 1831, 1968, 2580
PspN4I	GGNNCC	9 cut(s)	212, 504, 678, 762, 1104, 1659, 1734, 2044, 3186
PspPI	GGNCC	3 cut(s)	445, 2248, 3225
PspXI	VCTCGAGB	1 cut(s)	2495
PstI	CTGCAG	2 cut(s)	1081, 1588
PstNI	CAGNNNCTG	2 cut(s)	939, 1142
PsuI	RGATCY	2 cut(s)	291, 467
PvuI	CGATCG	1 cut(s)	10
RseI	CAYNNNNRTG	6 cut(s)	132, 144, 1709, 1932, 2139, 2276
SacI	GAGCTC	2 cut(s)	68, 458
SapI	GCTCTTC	1 cut(s)	2382
SaqAI	TTAA	9 cut(s)	90, 774, 1011, 1176, 1673, 1824, 1953, 2421, 2811
Sau96I	GGNCC	3 cut(s)	445, 2248, 3225
ScrFI	CCNGG	6 cut(s)	260, 1446, 1787, 1833, 1970, 2582
SduI	GDGCHC	3 cut(s)	68, 458, 1331
SfaNI	GCATC	7 cut(s)	53, 369, 961, 1528, 1846, 2401, 2763
SfcI	CTRYAG	2 cut(s)	1077, 1584
Sfr274I	CTCGAG	1 cut(s)	2495
SinI	GGWCC	1 cut(s)	2248
SlaI	CTCGAG	1 cut(s)	2495
SmiMI	CAYNNNNRTG	6 cut(s)	132, 144, 1709, 1932, 2139, 2276
SmlI	CTYRAG	7 cut(s)	392, 1017, 1154, 1868, 1978, 2495, 2783
SmoI	CTYRAG	7 cut(s)	392, 1017, 1154, 1868, 1978, 2495, 2783
SseBI	AGGCCT	1 cut(s)	320
SspMI	CTAG	7 cut(s)	459, 1560, 2036, 2075, 2106, 2660, 2747
SstI	GAGCTC	2 cut(s)	68, 458
StuI	AGGCCT	1 cut(s)	320
StyD4I	CCNGG	6 cut(s)	258, 1444, 1785, 1831, 1968, 2580
StyI	CCWWGG	4 cut(s)	2244, 2295, 2935, 3202
TaiI	ACGT	3 cut(s)	962, 1230, 2187
TaqI	TCGA	4 cut(s)	452, 558, 955, 2496
TatI	WGTACW	3 cut(s)	1942, 2302, 2956
TauI	GCSGC	4 cut(s)	109, 1067, 1968, 2821
TfiI	GAWTC	9 cut(s)	877, 1580, 1678, 2080, 2726, 2806, 2903, 2909, 2966
Tru1I	TTAA	9 cut(s)	90, 774, 1011, 1176, 1673, 1824, 1953, 2421, 2811
Tru9I	TTAA	9 cut(s)	90, 774, 1011, 1176, 1673, 1824, 1953, 2421, 2811
TscAI	CASTG	5 cut(s)	76, 151, 735, 904, 3139
TseFI	GTSAC	1 cut(s)	726
TseI	GCWGC	7 cut(s)	638, 1025, 1076, 1516, 1586, 2577, 3210
Tsp45I	GTSAC	1 cut(s)	726
TspDTI	ATGAA	8 cut(s)	150, 753, 1503, 1563, 1713, 2246, 2548, 2848
TspGWI	ACGGA	2 cut(s)	1525, 1802
TspRI	CASTG	5 cut(s)	76, 151, 735, 904, 3139
VpaK11BI	GGWCC	1 cut(s)	2248
VspI	ATTAAT	1 cut(s)	2421
XapI	RAATTY	7 cut(s)	714, 976, 1335, 1861, 2048, 2879, 3230
XbaI	TCTAGA	1 cut(s)	2074
XceI	RCATGY	2 cut(s)	386, 2210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2342
XhoI	CTCGAG	1 cut(s)	2495
XmiI	GTMKAC	2 cut(s)	122, 2153
XmnI	GAANNNNTTC	1 cut(s)	2725
XspI	CTAG	7 cut(s)	459, 1560, 2036, 2075, 2106, 2660, 2747
Zsp2I	ATGCAT	2 cut(s)	384, 2212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.