Rorug03G0040800

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001181
Physical Location & Seq
Forward (+)
3183146 .. 3184742
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0040800.1

Sequence Viewer

Length: 645 bp
ATGGGTCTGACATCTGAGAGAGACATGTCTAAGAACCGATTGCAAGAGGAGGCTCAGAAAAGTCGTTTAAAATTTCCCTCGTATTTACACACCCGGGAAGGACCGGATCATGCCCCAGAATTCAAAGCAACCGTCAAATTCAATGGAAAAATTTACAAAAGTCCTACCTTTTACCCTACTCTTAGACAGGCAGAGAATGCTGCAGCAGAAGTAGCATTGAACAAAGGTACAAAAGGAGGGCATAAGGCCGCAGTACTGGTGAGTAGCAAAAACCGTAGTGCATACATGTTTAAGAACCGATTGCAAGAGAAGGCTCAGAAAAGTCGTTTAAAATTTCCCTCCTATTCACACACCCGGAAAGGACCGGATCATGCCCCACGATTCAAAGCAACCGTCAACTTCGATGGAAAAACTTTTGAAAGTCCAACCTTTTACCCTACTCTTAGAGAGGCAGAGAATGCTGCAGCAGAAGTAGCATTGAACACAGTTGAAAAAGGAGGGCATCACCTAGCATTGGCCGCAGTACTGGTGAGTAAAACAAAAACCGTAGTCTTTCTAACTTTGGAGGTCATGTTTTGTTGTGGGTTTTGGTGGGCTGTGTTCAATGTTATCATTTTGGGCCGTGGTCCATATAGAGGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

214

Amino Acids

24.0

Weight (kDa)

9.94

Isoelectric Point (pI)

38.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
dsrm PF00035 11 - 75 6.7e-14 Double-stranded RNA binding motif
dsrm PF00035 98 - 161 7.7e-14 Double-stranded RNA binding motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 249, 519
AclWI GGATC 2 cut(s) 114, 375
AcoI YGGCCR 1 cut(s) 516
AcsI RAATTY 5 cut(s) 71, 119, 137, 150, 332
AfaI GTAC 3 cut(s) 229, 255, 525
AfiI CCNNNNNNNGG 2 cut(s) 514, 635
AflIII ACRYGT 2 cut(s) 24, 285
AgsI TTSAA 8 cut(s) 124, 142, 220, 385, 419, 481, 491, 604
Alw26I GTCTC 1 cut(s) 15
AlwI GGATC 2 cut(s) 114, 375
Ama87I CYCGRG 1 cut(s) 93
AoxI GGCC 3 cut(s) 246, 516, 619
ApeKI GCWGC 4 cut(s) 200, 203, 461, 464
ApoI RAATTY 5 cut(s) 71, 119, 137, 150, 332
ArsI GACNNNNNNTTYG 4 cut(s) 117, 149, 378, 410
AspS9I GGNCC 4 cut(s) 101, 362, 619, 626
AsuC2I CCSGG 3 cut(s) 94, 95, 355
AsuHPI GGTGA 3 cut(s) 271, 497, 541
AvaI CYCGRG 1 cut(s) 93
AvaII GGWCC 3 cut(s) 101, 362, 626
BbvI GCAGC 4 cut(s) 187, 215, 448, 476
BccI CCATC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 606
BcnI CCSGG 3 cut(s) 94, 95, 355
BcoDI GTCTC 1 cut(s) 15
BfaI CTAG 2 cut(s) 509, 643
BfmI CTRYAG 2 cut(s) 201, 462
BisI GCNGC 6 cut(s) 201, 204, 249, 462, 465, 519
BlsI GCNGC 6 cut(s) 202, 205, 250, 463, 466, 520
BmcAI AGTACT 2 cut(s) 255, 525
Bme1390I CCNGG 3 cut(s) 94, 95, 355
Bme18I GGWCC 3 cut(s) 101, 362, 626
BmeT110I CYCGRG 1 cut(s) 93
BmgT120I GGNCC 4 cut(s) 101, 362, 619, 626
BmrFI CCNGG 3 cut(s) 94, 95, 355
BmsI GCATC 1 cut(s) 511
BpuMI CCSGG 3 cut(s) 94, 95, 355
BsaJI CCNNGG 2 cut(s) 93, 622
BsaWI WCCGGW 2 cut(s) 103, 364
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bsc4I CCNNNNNNNGG 2 cut(s) 514, 635
Bse1I ACTGG 2 cut(s) 261, 531
BseDI CCNNGG 2 cut(s) 93, 622
BseLI CCNNNNNNNGG 2 cut(s) 514, 635
BseMII CTCAG 3 cut(s) 6, 68, 329
BseNI ACTGG 2 cut(s) 261, 531
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 4 cut(s) 187, 215, 448, 476
BshFI GGCC 3 cut(s) 248, 518, 621
BsiHKCI CYCGRG 1 cut(s) 93
BsiSI CCGG 4 cut(s) 94, 104, 355, 365
BslI CCNNNNNNNGG 2 cut(s) 514, 635
BsmAI GTCTC 1 cut(s) 15
BsmI GAATGC 2 cut(s) 202, 463
BsnI GGCC 3 cut(s) 248, 518, 621
BsoBI CYCGRG 1 cut(s) 93
Bsp143I GATC 2 cut(s) 106, 367
BspACI CCGC 2 cut(s) 249, 519
BspANI GGCC 3 cut(s) 248, 518, 621
BspCNI CTCAG 3 cut(s) 7, 67, 328
BspMAI CTGCAG 2 cut(s) 205, 466
BspPI GGATC 2 cut(s) 114, 375
BsrI ACTGG 2 cut(s) 261, 531
BssECI CCNNGG 2 cut(s) 93, 622
BssMI GATC 2 cut(s) 106, 367
Bst4CI ACNGT 5 cut(s) 133, 275, 394, 487, 547
BstAPI GCANNNNNTGC 2 cut(s) 197, 458
BstDEI CTNAG 6 cut(s) 15, 30, 54, 182, 315, 443
BstDSI CCRYGG 1 cut(s) 622
BstKTI GATC 2 cut(s) 109, 370
BstMAI GTCTC 1 cut(s) 15
BstMBI GATC 2 cut(s) 106, 367
BstMWI GCNNNNNNNGC 5 cut(s) 197, 212, 458, 473, 518
BstNSI RCATGY 2 cut(s) 28, 289
BstSCI CCNGG 3 cut(s) 92, 93, 353
BstSFI CTRYAG 2 cut(s) 201, 462
BstV1I GCAGC 4 cut(s) 187, 215, 448, 476
BsuRI GGCC 3 cut(s) 248, 518, 621
BtgI CCRYGG 1 cut(s) 622
Cfr13I GGNCC 4 cut(s) 101, 362, 619, 626
Cfr9I CCCGGG 1 cut(s) 93
Csp6I GTAC 3 cut(s) 228, 254, 524
CviAII CATG 5 cut(s) 25, 110, 286, 371, 571
CviJI RGCY 6 cut(s) 53, 248, 314, 518, 596, 621
CviKI_1 RGCY 6 cut(s) 53, 248, 314, 518, 596, 621
CviQI GTAC 3 cut(s) 228, 254, 524
DdeI CTNAG 6 cut(s) 15, 30, 54, 182, 315, 443
DpnI GATC 2 cut(s) 108, 369
DpnII GATC 2 cut(s) 106, 367
DraI TTTAAA 2 cut(s) 69, 330
EaeI YGGCCR 1 cut(s) 516
Eco47I GGWCC 3 cut(s) 101, 362, 626
Eco88I CYCGRG 1 cut(s) 93
EcoRI GAATTC 1 cut(s) 119
FaeI CATG 5 cut(s) 28, 113, 289, 374, 574
FaiI YATR 9 cut(s) 26, 111, 243, 283, 287, 372, 572, 631, 633
FatI CATG 5 cut(s) 24, 109, 285, 370, 570
Fnu4HI GCNGC 6 cut(s) 201, 204, 249, 462, 465, 519
Fsp4HI GCNGC 6 cut(s) 201, 204, 249, 462, 465, 519
FspBI CTAG 2 cut(s) 509, 643
GluI GCNGC 6 cut(s) 201, 204, 249, 462, 465, 519
HaeIII GGCC 3 cut(s) 248, 518, 621
HapII CCGG 4 cut(s) 94, 104, 355, 365
Hin1II CATG 5 cut(s) 28, 113, 289, 374, 574
HincII GTYRAC 1 cut(s) 397
HindII GTYRAC 1 cut(s) 397
HinfI GANTC 1 cut(s) 381
HpaII CCGG 4 cut(s) 94, 104, 355, 365
HphI GGTGA 3 cut(s) 271, 497, 541
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 4 cut(s) 9, 16, 57, 318
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 2 cut(s) 92, 304
HpyCH4III ACNGT 5 cut(s) 133, 275, 394, 487, 547
HpyCH4V TGCA 5 cut(s) 43, 203, 281, 304, 464
HpyF10VI GCNNNNNNNGC 5 cut(s) 197, 212, 458, 473, 518
HpyF3I CTNAG 6 cut(s) 15, 30, 54, 182, 315, 443
Hsp92II CATG 5 cut(s) 28, 113, 289, 374, 574
Kzo9I GATC 2 cut(s) 106, 367
LpnPI CCDG 8 cut(s) 107, 117, 129, 173, 242, 368, 378, 512
Lsp1109I GCAGC 4 cut(s) 187, 215, 448, 476
LweI GCATC 1 cut(s) 511
MaeI CTAG 2 cut(s) 509, 643
MalI GATC 2 cut(s) 108, 369
MboI GATC 2 cut(s) 106, 367
MluCI AATT 5 cut(s) 71, 119, 137, 150, 332
MmeI TCCRAC 1 cut(s) 449
MnlI CCTC 9 cut(s) 40, 43, 88, 230, 349, 442, 491, 559, 629
MseI TTAA 3 cut(s) 68, 291, 329
MspI CCGG 4 cut(s) 94, 104, 355, 365
MspR9I CCNGG 3 cut(s) 94, 95, 355
Mva1269I GAATGC 2 cut(s) 202, 463
MwoI GCNNNNNNNGC 5 cut(s) 197, 212, 458, 473, 518
NciI CCSGG 3 cut(s) 94, 95, 355
NdeII GATC 2 cut(s) 106, 367
NlaIII CATG 5 cut(s) 28, 113, 289, 374, 574
NspI RCATGY 2 cut(s) 28, 289
PciI ACATGT 2 cut(s) 24, 285
PctI GAATGC 2 cut(s) 202, 463
PfeI GAWTC 1 cut(s) 381
PkrI GCNGC 6 cut(s) 202, 205, 250, 463, 466, 520
PscI ACATGT 2 cut(s) 24, 285
PspPI GGNCC 4 cut(s) 101, 362, 619, 626
PstI CTGCAG 2 cut(s) 205, 466
RsaI GTAC 3 cut(s) 229, 255, 525
RsaNI GTAC 3 cut(s) 228, 254, 524
SaqAI TTAA 3 cut(s) 68, 291, 329
SatI GCNGC 6 cut(s) 201, 204, 249, 462, 465, 519
Sau3AI GATC 2 cut(s) 106, 367
Sau96I GGNCC 4 cut(s) 101, 362, 619, 626
ScaI AGTACT 2 cut(s) 255, 525
ScrFI CCNGG 3 cut(s) 94, 95, 355
SetI ASST 5 cut(s) 170, 229, 431, 510, 570
SfaNI GCATC 1 cut(s) 511
SfcI CTRYAG 2 cut(s) 201, 462
SinI GGWCC 3 cut(s) 101, 362, 626
SmaI CCCGGG 1 cut(s) 95
Sse9I AATT 5 cut(s) 71, 119, 137, 150, 332
SsiI CCGC 2 cut(s) 249, 519
SspMI CTAG 2 cut(s) 509, 643
StyD4I CCNGG 3 cut(s) 92, 93, 353
TaaI ACNGT 5 cut(s) 133, 275, 394, 487, 547
TaqI TCGA 1 cut(s) 402
TasI AATT 5 cut(s) 71, 119, 137, 150, 332
TatI WGTACW 2 cut(s) 253, 523
TauI GCSGC 2 cut(s) 251, 521
TfiI GAWTC 1 cut(s) 381
Tru1I TTAA 3 cut(s) 68, 291, 329
Tru9I TTAA 3 cut(s) 68, 291, 329
TseI GCWGC 4 cut(s) 200, 203, 461, 464
TspMI CCCGGG 1 cut(s) 93
VpaK11BI GGWCC 3 cut(s) 101, 362, 626
XapI RAATTY 5 cut(s) 71, 119, 137, 150, 332
XceI RCATGY 2 cut(s) 28, 289
XmaI CCCGGG 1 cut(s) 93
XspI CTAG 2 cut(s) 509, 643
ZrmI AGTACT 2 cut(s) 255, 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.