Rorug03G0025200

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001181
Physical Location & Seq
Reverse (-)
1972863 .. 1974245
1383 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0025200.1

Sequence Viewer

Length: 471 bp
ATGGTACAAACTCTAAGTGTGTGTGCAAGAAAATCTTCGGTATTTCTATTACCTGTCCAGTTTGTAAATTGGCACCAACTAATCAAGTTTCGCTGCAAGAGAAACTCAAGCCTCAGGCAGACCAAGGTTGCCGCTGAGCCGAGTAATCGCAGGGCCAATTTAAAAGTTGACGAGAAGCAAAAGCGGCCCAAATTAGAGGCAAAACTTACAAAAGGAGGTAGGACAGCAAGCCTGCAGGGTTACAATGATGCATTTTCTGACTACATTACTCGTGCAAAAATTAGGATCAGAGCTATGTCAAGTGTTGGCATTGAAAAGATTGCCTCTGGATCCGCAGATGATGTGTATGATACGCAGAAAGAAGATAGCACCAAAGATACATTTTCAGTTTATATCAATCGTGCTAAGATGAAGATCAGAAAAACGTCGAGTATTGGAAGCAGAAAGATCATCTCCTTCAAACGAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

156

Amino Acids

17.75

Weight (kDa)

10.42

Isoelectric Point (pI)

39.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 72
AciI CCGC 3 cut(s) 132, 184, 333
AclWI GGATC 3 cut(s) 293, 324, 337
AfaI GTAC 1 cut(s) 6
AgsI TTSAA 2 cut(s) 314, 460
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
AlwI GGATC 3 cut(s) 293, 324, 337
AoxI GGCC 2 cut(s) 153, 185
ApeKI GCWGC 1 cut(s) 93
Asp700I GAANNNNTTC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 153, 186
AxyI CCTNAGG 1 cut(s) 113
BamHI GGATCC 1 cut(s) 329
BanI GGYRCC 1 cut(s) 72
BauI CACGAG 1 cut(s) 270
BbvI GCAGC 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 233
BisI GCNGC 3 cut(s) 94, 132, 185
BlpI GCTNAGC 1 cut(s) 135
BlsI GCNGC 3 cut(s) 95, 133, 186
BmgT120I GGNCC 2 cut(s) 153, 186
BmiI GGNNCC 2 cut(s) 74, 331
BmsI GCATC 1 cut(s) 238
Bpu1102I GCTNAGC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 91
BsaBI GATNNNNATC 1 cut(s) 413
BsaJI CCNNGG 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 58
Bse21I CCTNAGG 1 cut(s) 113
Bse8I GATNNNNATC 1 cut(s) 413
BseDI CCNNGG 1 cut(s) 123
BseJI GATNNNNATC 1 cut(s) 413
BseMII CTCAG 2 cut(s) 126, 127
BseNI ACTGG 1 cut(s) 58
BseXI GCAGC 1 cut(s) 80
BshFI GGCC 2 cut(s) 155, 187
BshNI GGYRCC 1 cut(s) 72
BsnI GGCC 2 cut(s) 155, 187
Bsp143I GATC 4 cut(s) 285, 329, 414, 447
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 3 cut(s) 132, 184, 333
BspANI GGCC 2 cut(s) 155, 187
BspCNI CTCAG 2 cut(s) 126, 127
BspLI GGNNCC 2 cut(s) 74, 331
BspMAI CTGCAG 1 cut(s) 237
BspPI GGATC 3 cut(s) 293, 324, 337
BspT107I GGYRCC 1 cut(s) 72
BsrI ACTGG 1 cut(s) 58
BssECI CCNNGG 1 cut(s) 123
BssMI GATC 4 cut(s) 285, 329, 414, 447
BssSI CACGAG 1 cut(s) 270
BssT1I CCWWGG 1 cut(s) 123
Bst2BI CACGAG 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 229, 233
BstDEI CTNAG 4 cut(s) 14, 113, 135, 405
BstKTI GATC 4 cut(s) 288, 332, 417, 450
BstMBI GATC 4 cut(s) 285, 329, 414, 447
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstSFI CTRYAG 1 cut(s) 233
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 329
BstYI RGATCY 1 cut(s) 329
Bsu36I CCTNAGG 1 cut(s) 113
BsuRI GGCC 2 cut(s) 155, 187
Cac8I GCNNGC 2 cut(s) 229, 233
Cfr13I GGNCC 2 cut(s) 153, 186
Csp6I GTAC 1 cut(s) 5
CviJI RGCY 6 cut(s) 111, 139, 155, 187, 231, 293
CviKI_1 RGCY 6 cut(s) 111, 139, 155, 187, 231, 293
CviQI GTAC 1 cut(s) 5
DdeI CTNAG 4 cut(s) 14, 113, 135, 405
DpnI GATC 4 cut(s) 287, 331, 416, 449
DpnII GATC 4 cut(s) 285, 329, 414, 447
DraI TTTAAA 1 cut(s) 162
Eco130I CCWWGG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 113
EcoT14I CCWWGG 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 253
ErhI CCWWGG 1 cut(s) 123
FaiI YATR 3 cut(s) 296, 348, 393
FalI AAGNNNNNCTT 2 cut(s) 19, 51
Fnu4HI GCNGC 3 cut(s) 94, 132, 185
Fsp4HI GCNGC 3 cut(s) 94, 132, 185
GluI GCNGC 3 cut(s) 94, 132, 185
HaeIII GGCC 2 cut(s) 155, 187
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 259, 290, 419
Hpy188III TCNNGA 1 cut(s) 327
Hpy8I GTNNAC 1 cut(s) 169
Hpy99I CGWCG 1 cut(s) 430
HpyAV CCTTC 1 cut(s) 466
HpyCH4IV ACGT 1 cut(s) 425
HpyCH4V TGCA 5 cut(s) 26, 96, 235, 251, 275
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 4 cut(s) 14, 113, 135, 405
HpySE526I ACGT 1 cut(s) 425
Kzo9I GATC 4 cut(s) 285, 329, 414, 447
LpnPI CCDG 7 cut(s) 66, 71, 100, 136, 221, 245, 312
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 1 cut(s) 238
MaeII ACGT 1 cut(s) 425
MaeIII GTNAC 1 cut(s) 239
MalI GATC 4 cut(s) 287, 331, 416, 449
MboI GATC 4 cut(s) 285, 329, 414, 447
MboII GAAGA 3 cut(s) 27, 374, 424
MflI RGATCY 1 cut(s) 329
MluCI AATT 4 cut(s) 67, 157, 191, 279
MnlI CCTC 4 cut(s) 122, 190, 209, 334
Mph1103I ATGCAT 1 cut(s) 253
MroXI GAANNNNTTC 1 cut(s) 34
MseI TTAA 1 cut(s) 161
MspA1I CMGCKG 1 cut(s) 134
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeII GATC 4 cut(s) 285, 329, 414, 447
NlaIV GGNNCC 2 cut(s) 74, 331
NmeAIII GCCGAG 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 253
PdmI GAANNNNTTC 1 cut(s) 34
PkrI GCNGC 3 cut(s) 95, 133, 186
PspN4I GGNNCC 2 cut(s) 74, 331
PspPI GGNCC 2 cut(s) 153, 186
PstI CTGCAG 1 cut(s) 237
PsuI RGATCY 1 cut(s) 329
RsaI GTAC 1 cut(s) 6
RsaNI GTAC 1 cut(s) 5
SaqAI TTAA 1 cut(s) 161
SatI GCNGC 3 cut(s) 94, 132, 185
Sau3AI GATC 4 cut(s) 285, 329, 414, 447
Sau96I GGNCC 2 cut(s) 153, 186
SbfI CCTGCAGG 1 cut(s) 237
SdaI CCTGCAGG 1 cut(s) 237
SetI ASST 5 cut(s) 55, 129, 220, 295, 428
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 233
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse8387I CCTGCAGG 1 cut(s) 237
Sse9I AATT 4 cut(s) 67, 157, 191, 279
SsiI CCGC 3 cut(s) 132, 184, 333
StyI CCWWGG 1 cut(s) 123
TaiI ACGT 1 cut(s) 428
TaqI TCGA 1 cut(s) 428
TasI AATT 4 cut(s) 67, 157, 191, 279
TauI GCSGC 2 cut(s) 134, 187
Tru1I TTAA 1 cut(s) 161
Tru9I TTAA 1 cut(s) 161
TseI GCWGC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 425
XmnI GAANNNNTTC 1 cut(s) 34
Zsp2I ATGCAT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.