Rmu_co8443511.1_g000001

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8443511.1
OG0001181
Physical Location & Seq
Forward (+)
111 .. 1610
1500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8443511.1_g000001.1.cds

Sequence Viewer

Length: 1500 bp
atggtcccctttcatgttgccaccataaggacagttagtgtccacgcggagtcagccaacactaatcaggcttgttatatcagaatcatcttcaatgttcctgggactccttttagtcctcatgatacaaactcactgaaaaacttgggttctatatatttaaaggaagtttcatttcgctccaaggacacaaggcacataaatgaagttacacaggtgatcaaaaaccttcggaagcgagttcagtccagggagagtgagagagctgagagggctacacttgttactcaggagaaactccaactagctggtaacaaatttaagccactgagattgaatgacctctggattcgacctgtgtttggtggacgtggcagaaagattccaggtactcttgaagctcatgcaaatgggtttcgttactctaccaccagacaagatgagcgcgtggatgtaatgtatggaaatattaagcatgcttttttccagccagcagagaatgagatgattactctccttcattttcatcttcacaatcacataatggtgggcaacaagaaaaccaaagacgtgcaattctatgtggaggttatggatgtagttcagaccttgggaagtagtaagagatctgcctacgacccagatgagattgaagaagagcaacgagagagggctaggaagaacaaagtcaacactgaatttcggacctttgtgactcgggtacaggatctttggcagcagccccagtttgaaggccttgaacttatgtttgatcagcctatgagggagcttggtttccacggtgtgccttataaatcctcagcatatatcgtccctactacaaattgcctggttgaactgattgaaactccttttcttgttgtcactcttggcgagattgaaattgtgaatctggaaagggttgggcttggacagaagaattttgacctggcaattgtgttcaaggattttaaaaaagatgttcttcggattgattcgatcccatccacagcacttgaaggtctcaaggaatggctggacgacacagagatcaagtactatgagagcaggatgaatctgtcgtggaaacctatactgaagacaattactgaggatccgcagagcttccttgataatggaggttgggagtttttgaatttggagggaacggattcagactctgaacagtctcaggagtcagaccagggttatgaaccatctgatatggaatccgaatcagaatcggaggatgaatcttctgatagtgcgtcacttgtggagtctgaggatgatgaggaggaagattcagaagaagtctcggaggatgaggaggggaagacatgggaagagttggagagggaagcaagcaatgcagacagggagaaaggcaacgagtcggacagcgaggaggacaggaagagaaggaagatgaaagcttttggcaaggctcgagccccgcctgctggtagcatcccaaagcggtccaagctgaggagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

499

Amino Acids

57.4

Weight (kDa)

5.11

Isoelectric Point (pI)

56.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 813
AccII CGCG 2 cut(s) 47, 447
AciI CCGC 4 cut(s) 47, 1118, 1457, 1480
AclWI GGATC 4 cut(s) 735, 994, 1109, 1122
AcsI RAATTY 4 cut(s) 317, 698, 940, 1156
AcuI CTGAAG 1 cut(s) 1118
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 3 cut(s) 391, 723, 1058
AfiI CCNNNNNNNGG 4 cut(s) 27, 362, 1463, 1491
AjiI CACGTC 2 cut(s) 371, 571
AjnI CCWGG 6 cut(s) 100, 248, 385, 849, 948, 1203
AluBI AGCT 7 cut(s) 266, 308, 401, 790, 1125, 1436, 1489
AluI AGCT 7 cut(s) 266, 308, 401, 790, 1125, 1436, 1489
Alw26I GTCTC 3 cut(s) 1028, 1194, 1321
AlwI GGATC 4 cut(s) 735, 994, 1109, 1122
AlwNI CAGNNNCTG 1 cut(s) 1181
Ama87I CYCGRG 2 cut(s) 717, 1449
AoxI GGCC 1 cut(s) 754
ApeKI GCWGC 2 cut(s) 736, 739
ApoI RAATTY 4 cut(s) 317, 698, 940, 1156
Asp700I GAANNNNTTC 1 cut(s) 1171
AspLEI GCGC 1 cut(s) 447
AspS9I GGNCC 3 cut(s) 4, 705, 1482
AsuHPI GGTGA 1 cut(s) 229
AvaI CYCGRG 2 cut(s) 717, 1449
AvaII GGWCC 3 cut(s) 4, 705, 1482
BamHI GGATCC 1 cut(s) 1114
BanII GRGCYC 1 cut(s) 1456
BbsI GAAGAC 2 cut(s) 1106, 1343
BbvCI CCTCAGC 2 cut(s) 820, 1490
BbvI GCAGC 2 cut(s) 748, 751
BccI CCATC 2 cut(s) 1012, 1225
BciT130I CCWGG 6 cut(s) 102, 250, 387, 851, 950, 1205
BclI TGATCA 2 cut(s) 219, 772
BcoDI GTCTC 3 cut(s) 1028, 1194, 1321
BfaI CTAG 2 cut(s) 305, 675
BglII AGATCT 1 cut(s) 626
BisI GCNGC 2 cut(s) 737, 740
BlsI GCNGC 2 cut(s) 738, 741
BmcAI AGTACT 1 cut(s) 1058
Bme1390I CCNGG 6 cut(s) 102, 250, 387, 851, 950, 1205
Bme18I GGWCC 3 cut(s) 4, 705, 1482
BmeT110I CYCGRG 2 cut(s) 717, 1449
BmgBI CACGTC 2 cut(s) 371, 571
BmgT120I GGNCC 3 cut(s) 4, 705, 1482
BmiI GGNNCC 2 cut(s) 6, 1116
BmrFI CCNGG 6 cut(s) 102, 250, 387, 851, 950, 1205
BmrI ACTGGG 1 cut(s) 739
BmsI GCATC 1 cut(s) 1479
BmuI ACTGGG 1 cut(s) 739
BpiI GAAGAC 2 cut(s) 1106, 1343
Bpu10I CCTNAGC 2 cut(s) 820, 1490
BpuEI CTTGAG 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 1028
BsaJI CCNNGG 6 cut(s) 101, 183, 249, 609, 799, 1204
Bsc4I CCNNNNNNNGG 4 cut(s) 27, 362, 1463, 1491
Bse1I ACTGG 1 cut(s) 745
Bse3DI GCAATG 1 cut(s) 1375
BseBI CCWGG 6 cut(s) 102, 250, 387, 851, 950, 1205
BseDI CCNNGG 6 cut(s) 101, 183, 249, 609, 799, 1204
BseGI GGATG 8 cut(s) 457, 601, 1004, 1077, 1255, 1294, 1330, 1470
BseLI CCNNNNNNNGG 4 cut(s) 27, 362, 1463, 1491
BseMI GCAATG 1 cut(s) 1375
BseMII CTCAG 8 cut(s) 258, 302, 320, 834, 1101, 1205, 1275, 1481
BseNI ACTGG 1 cut(s) 745
BseRI GAGGAG 3 cut(s) 1310, 1343, 1421
BseXI GCAGC 2 cut(s) 748, 751
Bsh1236I CGCG 2 cut(s) 47, 447
BshFI GGCC 1 cut(s) 756
BsiHKCI CYCGRG 2 cut(s) 717, 1449
BslFI GGGAC 2 cut(s) 118, 818
BslI CCNNNNNNNGG 4 cut(s) 27, 362, 1463, 1491
BsmAI GTCTC 3 cut(s) 1028, 1194, 1321
BsmFI GGGAC 2 cut(s) 118, 818
BsnI GGCC 1 cut(s) 756
Bso31I GGTCTC 1 cut(s) 1028
BsoBI CYCGRG 2 cut(s) 717, 1449
Bsp1286I GDGCHC 1 cut(s) 1456
Bsp143I GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
BspACI CCGC 4 cut(s) 47, 1118, 1457, 1480
BspANI GGCC 1 cut(s) 756
BspCNI CTCAG 8 cut(s) 259, 301, 321, 833, 1102, 1204, 1276, 1482
BspFNI CGCG 2 cut(s) 47, 447
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 2 cut(s) 6, 1116
BspPI GGATC 4 cut(s) 735, 994, 1109, 1122
BspQI GCTCTTC 1 cut(s) 651
BspTNI GGTCTC 1 cut(s) 1028
BsrDI GCAATG 1 cut(s) 1375
BsrI ACTGG 1 cut(s) 745
BssECI CCNNGG 6 cut(s) 101, 183, 249, 609, 799, 1204
BssMI GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
BssT1I CCWWGG 2 cut(s) 183, 609
Bst2UI CCWGG 6 cut(s) 102, 250, 387, 851, 950, 1205
Bst4CI ACNGT 3 cut(s) 34, 803, 1188
Bst6I CTCTTC 3 cut(s) 651, 1341, 1412
BstAPI GCANNNNNTGC 1 cut(s) 1370
BstC8I GCNNGC 4 cut(s) 477, 492, 1366, 1461
BstDEI CTNAG 8 cut(s) 267, 288, 329, 820, 1110, 1191, 1284, 1490
BstDSI CCRYGG 1 cut(s) 799
BstF5I GGATG 8 cut(s) 457, 601, 1004, 1077, 1255, 1294, 1330, 1470
BstFNI CGCG 2 cut(s) 47, 447
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 7 cut(s) 222, 629, 730, 775, 1002, 1053, 1117
BstMAI GTCTC 3 cut(s) 1028, 1194, 1321
BstMBI GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
BstMWI GCNNNNNNNGC 5 cut(s) 53, 272, 1370, 1460, 1486
BstNI CCWGG 6 cut(s) 102, 250, 387, 851, 950, 1205
BstNSI RCATGY 1 cut(s) 479
BstSCI CCNGG 6 cut(s) 100, 248, 385, 849, 948, 1203
BstUI CGCG 2 cut(s) 47, 447
BstV1I GCAGC 2 cut(s) 748, 751
BstV2I GAAGAC 2 cut(s) 1106, 1343
BstX2I RGATCY 3 cut(s) 626, 727, 1114
BstXI CCANNNNNNTGG 1 cut(s) 308
BstYI RGATCY 3 cut(s) 626, 727, 1114
BsuRI GGCC 1 cut(s) 756
BtgI CCRYGG 1 cut(s) 799
BtrI CACGTC 2 cut(s) 371, 571
BtsCI GGATG 8 cut(s) 457, 601, 1004, 1077, 1255, 1294, 1330, 1470
BtsIMutI CAGTG 3 cut(s) 134, 326, 693
Cac8I GCNNGC 4 cut(s) 477, 492, 1366, 1461
CaiI CAGNNNCTG 1 cut(s) 1181
CciI TCATGA 1 cut(s) 121
CfoI GCGC 1 cut(s) 447
Cfr13I GGNCC 3 cut(s) 4, 705, 1482
CseI GACGC 1 cut(s) 1257
Csp6I GTAC 3 cut(s) 390, 722, 1057
CspCI CAANNNNNGTGG 4 cut(s) 315, 350, 997, 1032
CviAII CATG 5 cut(s) 14, 122, 404, 476, 1341
CviQI GTAC 3 cut(s) 390, 722, 1057
DdeI CTNAG 8 cut(s) 267, 288, 329, 820, 1110, 1191, 1284, 1490
DpnI GATC 7 cut(s) 221, 628, 729, 774, 1001, 1052, 1116
DpnII GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
DraI TTTAAA 2 cut(s) 162, 973
DraIII CACNNNGTG 1 cut(s) 805
Eam1104I CTCTTC 3 cut(s) 651, 1341, 1412
EarI CTCTTC 3 cut(s) 651, 1341, 1412
Eco130I CCWWGG 2 cut(s) 183, 609
Eco147I AGGCCT 1 cut(s) 756
Eco24I GRGCYC 1 cut(s) 1456
Eco31I GGTCTC 1 cut(s) 1028
Eco47I GGWCC 3 cut(s) 4, 705, 1482
Eco57I CTGAAG 1 cut(s) 1118
Eco88I CYCGRG 2 cut(s) 717, 1449
EcoRII CCWGG 6 cut(s) 100, 248, 385, 849, 948, 1203
EcoT14I CCWWGG 2 cut(s) 183, 609
EcoT38I GRGCYC 1 cut(s) 1456
ErhI CCWWGG 2 cut(s) 183, 609
FaeI CATG 5 cut(s) 17, 125, 407, 479, 1344
FalI AAGNNNNNCTT 2 cut(s) 969, 1001
FaqI GGGAC 2 cut(s) 118, 818
FatI CATG 5 cut(s) 13, 121, 403, 475, 1340
FauI CCCGC 1 cut(s) 1464
FbaI TGATCA 2 cut(s) 219, 772
Fnu4HI GCNGC 2 cut(s) 737, 740
FokI GGATG 8 cut(s) 464, 608, 991, 1084, 1262, 1301, 1337, 1457
FriOI GRGCYC 1 cut(s) 1456
Fsp4HI GCNGC 2 cut(s) 737, 740
FspBI CTAG 2 cut(s) 305, 675
GlaI GCGC 1 cut(s) 446
GluI GCNGC 2 cut(s) 737, 740
HaeIII GGCC 1 cut(s) 756
HgaI GACGC 1 cut(s) 1257
HhaI GCGC 1 cut(s) 447
Hin1II CATG 5 cut(s) 17, 125, 407, 479, 1344
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 1434
HphI GGTGA 1 cut(s) 229
Hpy166II GTNNAC 3 cut(s) 43, 368, 691
Hpy188III TCNNGA 6 cut(s) 122, 290, 346, 395, 914, 1193
Hpy8I GTNNAC 3 cut(s) 43, 368, 691
HpyAV CCTTC 5 cut(s) 239, 527, 746, 1013, 1416
HpyCH4III ACNGT 3 cut(s) 34, 803, 1188
HpyCH4IV ACGT 2 cut(s) 370, 570
HpyCH4V TGCA 3 cut(s) 407, 574, 1373
HpyF10VI GCNNNNNNNGC 5 cut(s) 53, 272, 1370, 1460, 1486
HpyF3I CTNAG 8 cut(s) 267, 288, 329, 820, 1110, 1191, 1284, 1490
HpySE526I ACGT 2 cut(s) 370, 570
Hsp92II CATG 5 cut(s) 17, 125, 407, 479, 1344
HspAI GCGC 1 cut(s) 445
Ksp22I TGATCA 2 cut(s) 219, 772
Kzo9I GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
LguI GCTCTTC 1 cut(s) 651
LmnI GCTCC 2 cut(s) 185, 787
Lsp1109I GCAGC 2 cut(s) 748, 751
LweI GCATC 1 cut(s) 1479
MaeI CTAG 2 cut(s) 305, 675
MaeII ACGT 2 cut(s) 370, 570
MaeIII GTNAC 7 cut(s) 208, 283, 311, 419, 712, 883, 1269
MalI GATC 7 cut(s) 221, 628, 729, 774, 1001, 1052, 1116
MboI GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
MfeI CAATTG 1 cut(s) 954
MflI RGATCY 3 cut(s) 626, 727, 1114
MhlI GDGCHC 1 cut(s) 1456
MluCI AATT 9 cut(s) 317, 575, 698, 844, 903, 940, 954, 1104, 1156
MlyI GAGTC 7 cut(s) 59, 100, 709, 1172, 1205, 1289, 1403
MmeI TCCRAC 3 cut(s) 325, 1332, 1377
MroXI GAANNNNTTC 1 cut(s) 1171
MseI TTAA 4 cut(s) 161, 321, 471, 972
MslI CAYNNNNRTG 3 cut(s) 201, 408, 545
MspR9I CCNGG 6 cut(s) 102, 250, 387, 851, 950, 1205
MunI CAATTG 1 cut(s) 954
MvaI CCWGG 6 cut(s) 102, 250, 387, 851, 950, 1205
MvnI CGCG 2 cut(s) 47, 447
MwoI GCNNNNNNNGC 5 cut(s) 53, 272, 1370, 1460, 1486
NdeII GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
NlaIII CATG 5 cut(s) 17, 125, 407, 479, 1344
NlaIV GGNNCC 2 cut(s) 6, 1116
NmuCI GTSAC 3 cut(s) 712, 883, 1269
NspI RCATGY 1 cut(s) 479
PaeI GCATGC 1 cut(s) 479
PaeR7I CTCGAG 1 cut(s) 1449
PagI TCATGA 1 cut(s) 121
PceI AGGCCT 1 cut(s) 756
PciSI GCTCTTC 1 cut(s) 651
PdmI GAANNNNTTC 1 cut(s) 1171
PkrI GCNGC 2 cut(s) 738, 741
PleI GAGTC 7 cut(s) 58, 100, 709, 1172, 1204, 1288, 1402
PpsI GAGTC 7 cut(s) 58, 100, 709, 1172, 1204, 1288, 1402
PsiI TTATAA 1 cut(s) 813
Psp6I CCWGG 6 cut(s) 100, 248, 385, 849, 948, 1203
PspGI CCWGG 6 cut(s) 100, 248, 385, 849, 948, 1203
PspN4I GGNNCC 2 cut(s) 6, 1116
PspPI GGNCC 3 cut(s) 4, 705, 1482
PspXI VCTCGAGB 1 cut(s) 1449
PstNI CAGNNNCTG 1 cut(s) 1181
PsuI RGATCY 3 cut(s) 626, 727, 1114
RsaI GTAC 3 cut(s) 391, 723, 1058
RsaNI GTAC 3 cut(s) 390, 722, 1057
RseI CAYNNNNRTG 3 cut(s) 201, 408, 545
SapI GCTCTTC 1 cut(s) 651
SaqAI TTAA 4 cut(s) 161, 321, 471, 972
SatI GCNGC 2 cut(s) 737, 740
Sau3AI GATC 7 cut(s) 219, 626, 727, 772, 999, 1050, 1114
Sau96I GGNCC 3 cut(s) 4, 705, 1482
ScaI AGTACT 1 cut(s) 1058
SchI GAGTC 7 cut(s) 59, 100, 709, 1172, 1205, 1289, 1403
ScrFI CCNGG 6 cut(s) 102, 250, 387, 851, 950, 1205
SduI GDGCHC 1 cut(s) 1456
SfaNI GCATC 1 cut(s) 1479
Sfr274I CTCGAG 1 cut(s) 1449
SinI GGWCC 3 cut(s) 4, 705, 1482
SlaI CTCGAG 1 cut(s) 1449
SmiMI CAYNNNNRTG 3 cut(s) 201, 408, 545
SmlI CTYRAG 2 cut(s) 1025, 1449
SmoI CTYRAG 2 cut(s) 1025, 1449
SphI GCATGC 1 cut(s) 479
Sse9I AATT 9 cut(s) 317, 575, 698, 844, 903, 940, 954, 1104, 1156
SseBI AGGCCT 1 cut(s) 756
SsiI CCGC 4 cut(s) 47, 1118, 1457, 1480
SspI AATATT 1 cut(s) 469
SspMI CTAG 2 cut(s) 305, 675
StuI AGGCCT 1 cut(s) 756
StyD4I CCNGG 6 cut(s) 100, 248, 385, 849, 948, 1203
StyI CCWWGG 2 cut(s) 183, 609
TaaI ACNGT 3 cut(s) 34, 803, 1188
TaiI ACGT 2 cut(s) 373, 573
TaqI TCGA 3 cut(s) 352, 998, 1450
TasI AATT 9 cut(s) 317, 575, 698, 844, 903, 940, 954, 1104, 1156
TatI WGTACW 1 cut(s) 1056
Tru1I TTAA 4 cut(s) 161, 321, 471, 972
Tru9I TTAA 4 cut(s) 161, 321, 471, 972
TscAI CASTG 3 cut(s) 141, 333, 700
TseFI GTSAC 3 cut(s) 712, 883, 1269
TseI GCWGC 2 cut(s) 736, 739
Tsp45I GTSAC 3 cut(s) 712, 883, 1269
TspDTI ATGAA 8 cut(s) 162, 219, 509, 515, 1088, 1227, 1266, 1445
TspGWI ACGGA 1 cut(s) 1184
TspRI CASTG 3 cut(s) 141, 333, 700
VpaK11BI GGWCC 3 cut(s) 4, 705, 1482
XapI RAATTY 4 cut(s) 317, 698, 940, 1156
XceI RCATGY 1 cut(s) 479
XhoI CTCGAG 1 cut(s) 1449
XmnI GAANNNNTTC 1 cut(s) 1171
XspI CTAG 2 cut(s) 305, 675
ZrmI AGTACT 1 cut(s) 1058
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.