Rmu_sc0019318.1_g000002

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019318.1
OG0001181
Physical Location & Seq
Reverse (-)
3529 .. 4995
1467 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019318.1_g000002.1.cds

Sequence Viewer

Length: 1227 bp
atgagtgatgtgactaatgggttgtctgacttgttgtctgtcaaagacaatgaggagcttgtgaatgtgaagagagctgctttcttgactactaaggtcatgaataatattgtggttccaaatcttgagtttgttattaatcacagtgagaaggtaacacgttcttttttgatggatgagatggtgaaggctatacaggaaccctctaaagcttttgcgaagctgattaatgtagaaaacgttggtatctgttaccctcctattcttcagagtggtgttggtggcaatgatgagttactttcatatgattctgctagtgtggttatatgtgcttttggatcccgttataagagttactgctcaaatgtagccaggacatttttggttgatcccaatccctttcagagaaaggcacatgaaattcttctcaaggcccatgatgcagccattagtgagttgaggcccgggaacaaagctagttctgcatatcaagcagctcgttctgtcgtggagaaggaggctcctgagttagtacctaatctgacagaatctgctgggacaggcattggtattgagcttgttgagtcccggttgaaacttaatgcgaacaatgaccttgtgctgaaagcaggaatggtgttcaatgtgtcacttggttttgaggacttgcagagtcagagtggtcttactaattcaaaggatcatagcttctctttgttgctagctgatactgttgttattaacaatgtcaagccagaggtcttgacagtcgaaagtgctaaagctattaaggttcctagtaaaatgaaacaagatgctaatggaacagaagatctgcggtccagcaaaaggatgaggttcaagcttgactggaatgatgagcttgacgggaacgatgtgcccactttctctgttgtgtccactcagccttccactttttccctgggtgttccattgctttggtcacattcgggtctgctaacagagcgtacagttccagtgtcgcagacagaaagacctccatggcagacagaaagagcttcatatggtataccttcatggaagagagaaagatcatcatggaagagagaaagaccgtcttcattcgttacacctccatgggtagcaaaacctgcattaggcacacttgactggaagacagagagacctgttacacctccaaggcagaaacaaggtgcatttggttatgcttattgtttcttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

408

Amino Acids

45.11

Weight (kDa)

7.64

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 348
Acc36I ACCTGC 1 cut(s) 1141
AccI GTMKAC 1 cut(s) 1051
AciI CCGC 1 cut(s) 838
AclI AACGTT 1 cut(s) 240
AclWI GGATC 4 cut(s) 333, 346, 383, 708
AcsI RAATTY 1 cut(s) 420
AcuI CTGAAG 1 cut(s) 251
AfaI GTAC 2 cut(s) 534, 991
AfiI CCNNNNNNNGG 2 cut(s) 849, 1139
AflIII ACRYGT 1 cut(s) 158
AgsI TTSAA 4 cut(s) 595, 643, 696, 862
AhdI GACNNNNNGTC 1 cut(s) 34
AjnI CCWGG 2 cut(s) 371, 942
Alw26I GTCTC 1 cut(s) 1159
AlwI GGATC 4 cut(s) 333, 346, 383, 708
AlwNI CAGNNNCTG 1 cut(s) 551
Ama87I CYCGRG 1 cut(s) 464
AoxI GGCC 2 cut(s) 432, 461
ApeKI GCWGC 3 cut(s) 77, 443, 494
ApoI RAATTY 1 cut(s) 420
AseI ATTAAT 2 cut(s) 138, 228
Asp700I GAANNNNTTC 1 cut(s) 423
AspS9I GGNCC 3 cut(s) 433, 462, 840
AsuC2I CCSGG 3 cut(s) 465, 466, 589
AsuHPI GGTGA 1 cut(s) 196
AsuNHI GCTAGC 1 cut(s) 721
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 1 cut(s) 840
BaeGI GKGCMC 1 cut(s) 903
BaeI ACNNNNGTAYC 4 cut(s) 229, 262, 720, 753
BamHI GGATCC 1 cut(s) 338
BbsI GAAGAC 2 cut(s) 1092, 1163
BbvI GCAGC 3 cut(s) 64, 455, 506
BccI CCATC 2 cut(s) 166, 175
BciT130I CCWGG 2 cut(s) 373, 944
BcnI CCSGG 3 cut(s) 465, 466, 589
BcoDI GTCTC 1 cut(s) 1159
BfaI CTAG 4 cut(s) 315, 477, 722, 798
BfuAI ACCTGC 1 cut(s) 1141
BglII AGATCT 1 cut(s) 832
BisI GCNGC 3 cut(s) 78, 444, 495
BlsI GCNGC 3 cut(s) 79, 445, 496
Bme1390I CCNGG 5 cut(s) 373, 465, 466, 589, 944
Bme18I GGWCC 1 cut(s) 840
BmeRI GACNNNNNGTC 1 cut(s) 34
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 433, 462, 840
BmiI GGNNCC 5 cut(s) 117, 201, 340, 522, 795
BmrFI CCNGG 5 cut(s) 373, 465, 466, 589, 944
BmsI GCATC 2 cut(s) 430, 805
BmtI GCTAGC 1 cut(s) 725
BpiI GAAGAC 2 cut(s) 1092, 1163
BpuEI CTTGAG 2 cut(s) 146, 413
BpuMI CCSGG 3 cut(s) 465, 466, 589
BsaBI GATNNNNATC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 1159
BsaJI CCNNGG 6 cut(s) 464, 942, 943, 1022, 1118, 1181
Bsc4I CCNNNNNNNGG 2 cut(s) 849, 1139
Bse1I ACTGG 3 cut(s) 875, 998, 1157
Bse3DI GCAATG 2 cut(s) 292, 953
Bse8I GATNNNNATC 1 cut(s) 393
BseBI CCWGG 2 cut(s) 373, 944
BseDI CCNNGG 6 cut(s) 464, 942, 943, 1022, 1118, 1181
BseGI GGATG 2 cut(s) 181, 858
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 849, 1139
BseMI GCAATG 2 cut(s) 292, 953
BseMII CTCAG 2 cut(s) 516, 938
BseNI ACTGG 3 cut(s) 875, 998, 1157
BseRI GAGGAG 1 cut(s) 68
BseSI GKGCMC 1 cut(s) 903
BseXI GCAGC 3 cut(s) 64, 455, 506
BseYI CCCAGC 1 cut(s) 554
BshFI GGCC 2 cut(s) 434, 463
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 465, 589
BslFI GGGAC 2 cut(s) 571, 571
BslI CCNNNNNNNGG 2 cut(s) 849, 1139
BsmAI GTCTC 1 cut(s) 1159
BsmFI GGGAC 2 cut(s) 571, 571
BsnI GGCC 2 cut(s) 434, 463
Bso31I GGTCTC 1 cut(s) 1159
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 903
Bsp143I GATC 5 cut(s) 338, 388, 700, 832, 1073
Bsp19I CCATGG 2 cut(s) 1022, 1118
BspACI CCGC 1 cut(s) 838
BspANI GGCC 2 cut(s) 434, 463
BspCNI CTCAG 2 cut(s) 517, 937
BspHI TCATGA 1 cut(s) 99
BspLI GGNNCC 5 cut(s) 117, 201, 340, 522, 795
BspMI ACCTGC 1 cut(s) 1141
BspOI GCTAGC 1 cut(s) 725
BspPI GGATC 4 cut(s) 333, 346, 383, 708
BspTNI GGTCTC 1 cut(s) 1159
BsrDI GCAATG 2 cut(s) 292, 953
BsrI ACTGG 3 cut(s) 875, 998, 1157
BssECI CCNNGG 6 cut(s) 464, 942, 943, 1022, 1118, 1181
BssMI GATC 5 cut(s) 338, 388, 700, 832, 1073
BssNAI GTATAC 1 cut(s) 1052
BssT1I CCWWGG 3 cut(s) 1022, 1118, 1181
Bst1107I GTATAC 1 cut(s) 1052
Bst2UI CCWGG 2 cut(s) 373, 944
Bst4CI ACNGT 5 cut(s) 146, 733, 769, 994, 1098
Bst6I CTCTTC 3 cut(s) 65, 1058, 1079
BstAPI GCANNNNNTGC 1 cut(s) 1133
BstC8I GCNNGC 1 cut(s) 723
BstDEI CTNAG 3 cut(s) 93, 525, 924
BstDSI CCRYGG 2 cut(s) 1022, 1118
BstENI CCTNNNNNAGG 1 cut(s) 1137
BstF5I GGATG 2 cut(s) 181, 858
BstKTI GATC 5 cut(s) 341, 391, 703, 835, 1076
BstMAI GTCTC 1 cut(s) 1159
BstMBI GATC 5 cut(s) 338, 388, 700, 832, 1073
BstMWI GCNNNNNNNGC 5 cut(s) 440, 482, 491, 985, 1133
BstNI CCWGG 2 cut(s) 373, 944
BstSCI CCNGG 5 cut(s) 371, 463, 464, 587, 942
BstSLI GKGCMC 1 cut(s) 903
BstV1I GCAGC 3 cut(s) 64, 455, 506
BstV2I GAAGAC 2 cut(s) 1092, 1163
BstX2I RGATCY 2 cut(s) 338, 832
BstXI CCANNNNNNTGG 1 cut(s) 960
BstYI RGATCY 2 cut(s) 338, 832
BstZ17I GTATAC 1 cut(s) 1052
BsuRI GGCC 2 cut(s) 434, 463
BtgI CCRYGG 2 cut(s) 1022, 1118
BtsCI GGATG 2 cut(s) 181, 858
BtsIMutI CAGTG 2 cut(s) 151, 1005
BveI ACCTGC 1 cut(s) 1141
Cac8I GCNNGC 1 cut(s) 723
CaiI CAGNNNCTG 1 cut(s) 551
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 3 cut(s) 433, 462, 840
Cfr9I CCCGGG 1 cut(s) 464
Csp6I GTAC 2 cut(s) 533, 990
CviAII CATG 7 cut(s) 100, 416, 437, 1023, 1059, 1080, 1119
CviQI GTAC 2 cut(s) 533, 990
DdeI CTNAG 3 cut(s) 93, 525, 924
DpnI GATC 5 cut(s) 340, 390, 702, 834, 1075
DpnII GATC 5 cut(s) 338, 388, 700, 832, 1073
DriI GACNNNNNGTC 1 cut(s) 34
Eam1104I CTCTTC 3 cut(s) 65, 1058, 1079
Eam1105I GACNNNNNGTC 1 cut(s) 34
EarI CTCTTC 3 cut(s) 65, 1058, 1079
Eco130I CCWWGG 3 cut(s) 1022, 1118, 1181
Eco31I GGTCTC 1 cut(s) 1159
Eco47I GGWCC 1 cut(s) 840
Eco57I CTGAAG 1 cut(s) 251
Eco88I CYCGRG 1 cut(s) 464
EcoNI CCTNNNNNAGG 1 cut(s) 1137
EcoRII CCWGG 2 cut(s) 371, 942
EcoT14I CCWWGG 3 cut(s) 1022, 1118, 1181
ErhI CCWWGG 3 cut(s) 1022, 1118, 1181
FaeI CATG 7 cut(s) 103, 419, 440, 1026, 1062, 1083, 1122
FalI AAGNNNNNCTT 2 cut(s) 1084, 1116
FaqI GGGAC 2 cut(s) 571, 571
FatI CATG 7 cut(s) 99, 415, 436, 1022, 1058, 1079, 1118
FauNDI CATATG 2 cut(s) 304, 1045
FblI GTMKAC 1 cut(s) 1051
Fnu4HI GCNGC 3 cut(s) 78, 444, 495
FokI GGATG 2 cut(s) 188, 865
Fsp4HI GCNGC 3 cut(s) 78, 444, 495
FspBI CTAG 4 cut(s) 315, 477, 722, 798
GluI GCNGC 3 cut(s) 78, 444, 495
GsaI CCCAGC 1 cut(s) 558
HaeIII GGCC 2 cut(s) 434, 463
HapII CCGG 2 cut(s) 465, 589
Hin1II CATG 7 cut(s) 103, 419, 440, 1026, 1062, 1083, 1122
HindIII AAGCTT 2 cut(s) 210, 863
HinfI GANTC 4 cut(s) 308, 548, 584, 673
HpaII CCGG 2 cut(s) 465, 589
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 2 cut(s) 921, 1052
Hpy188I TCNGA 5 cut(s) 28, 270, 405, 543, 678
Hpy188III TCNNGA 5 cut(s) 85, 100, 125, 524, 763
Hpy8I GTNNAC 2 cut(s) 921, 1052
HpyAV CCTTC 5 cut(s) 145, 181, 508, 939, 1065
HpyCH4III ACNGT 5 cut(s) 146, 733, 769, 994, 1098
HpyCH4IV ACGT 2 cut(s) 160, 240
HpyCH4V TGCA 5 cut(s) 443, 485, 670, 1136, 1199
HpyF10VI GCNNNNNNNGC 5 cut(s) 440, 482, 491, 985, 1133
HpyF3I CTNAG 3 cut(s) 93, 525, 924
HpySE526I ACGT 2 cut(s) 160, 240
Hsp92II CATG 7 cut(s) 103, 419, 440, 1026, 1062, 1083, 1122
Kzo9I GATC 5 cut(s) 338, 388, 700, 832, 1073
LmnI GCTCC 2 cut(s) 55, 526
Lsp1109I GCAGC 3 cut(s) 64, 455, 506
LweI GCATC 2 cut(s) 430, 805
MaeI CTAG 4 cut(s) 315, 477, 722, 798
MaeII ACGT 2 cut(s) 160, 240
MaeIII GTNAC 9 cut(s) 10, 154, 251, 294, 353, 648, 963, 1108, 1171
MalI GATC 5 cut(s) 340, 390, 702, 834, 1075
MboI GATC 5 cut(s) 338, 388, 700, 832, 1073
MboII GAAGA 8 cut(s) 82, 257, 416, 842, 1075, 1092, 1096, 1168
MflI RGATCY 2 cut(s) 338, 832
MhlI GDGCHC 1 cut(s) 903
MluCI AATT 2 cut(s) 420, 691
MlyI GAGTC 2 cut(s) 593, 682
MroXI GAANNNNTTC 1 cut(s) 423
MseI TTAA 6 cut(s) 138, 228, 600, 741, 789, 1225
MslI CAYNNNNRTG 1 cut(s) 1117
MspI CCGG 2 cut(s) 465, 589
MspR9I CCNGG 5 cut(s) 373, 465, 466, 589, 944
MvaI CCWGG 2 cut(s) 373, 944
MwoI GCNNNNNNNGC 5 cut(s) 440, 482, 491, 985, 1133
NciI CCSGG 3 cut(s) 465, 466, 589
NcoI CCATGG 2 cut(s) 1022, 1118
NdeI CATATG 2 cut(s) 304, 1045
NdeII GATC 5 cut(s) 338, 388, 700, 832, 1073
NheI GCTAGC 1 cut(s) 721
NlaIII CATG 7 cut(s) 103, 419, 440, 1026, 1062, 1083, 1122
NlaIV GGNNCC 5 cut(s) 117, 201, 340, 522, 795
NmuCI GTSAC 3 cut(s) 10, 648, 963
PagI TCATGA 1 cut(s) 99
PasI CCCWGGG 1 cut(s) 943
PdmI GAANNNNTTC 1 cut(s) 423
PfeI GAWTC 2 cut(s) 308, 548
PkrI GCNGC 3 cut(s) 79, 445, 496
PleI GAGTC 2 cut(s) 592, 681
PpsI GAGTC 2 cut(s) 592, 681
PshBI ATTAAT 2 cut(s) 138, 228
PsiI TTATAA 1 cut(s) 348
Psp1406I AACGTT 1 cut(s) 240
Psp6I CCWGG 2 cut(s) 371, 942
PspFI CCCAGC 1 cut(s) 554
PspGI CCWGG 2 cut(s) 371, 942
PspN4I GGNNCC 5 cut(s) 117, 201, 340, 522, 795
PspPI GGNCC 3 cut(s) 433, 462, 840
PstNI CAGNNNCTG 1 cut(s) 551
PsuI RGATCY 2 cut(s) 338, 832
RsaI GTAC 2 cut(s) 534, 991
RsaNI GTAC 2 cut(s) 533, 990
RseI CAYNNNNRTG 1 cut(s) 1117
SaqAI TTAA 6 cut(s) 138, 228, 600, 741, 789, 1225
SatI GCNGC 3 cut(s) 78, 444, 495
Sau3AI GATC 5 cut(s) 338, 388, 700, 832, 1073
Sau96I GGNCC 3 cut(s) 433, 462, 840
SchI GAGTC 2 cut(s) 593, 682
ScrFI CCNGG 5 cut(s) 373, 465, 466, 589, 944
SduI GDGCHC 1 cut(s) 903
SfaNI GCATC 2 cut(s) 430, 805
SinI GGWCC 1 cut(s) 840
SmaI CCCGGG 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 1117
SmlI CTYRAG 2 cut(s) 125, 428
SmoI CTYRAG 2 cut(s) 125, 428
Sse9I AATT 2 cut(s) 420, 691
SsiI CCGC 1 cut(s) 838
SspI AATATT 1 cut(s) 109
SspMI CTAG 4 cut(s) 315, 477, 722, 798
StyD4I CCNGG 5 cut(s) 371, 463, 464, 587, 942
StyI CCWWGG 3 cut(s) 1022, 1118, 1181
TaaI ACNGT 5 cut(s) 146, 733, 769, 994, 1098
TaiI ACGT 2 cut(s) 163, 243
TaqI TCGA 1 cut(s) 771
TasI AATT 2 cut(s) 420, 691
TfiI GAWTC 2 cut(s) 308, 548
Tru1I TTAA 6 cut(s) 138, 228, 600, 741, 789, 1225
Tru9I TTAA 6 cut(s) 138, 228, 600, 741, 789, 1225
TscAI CASTG 2 cut(s) 151, 1005
TseFI GTSAC 3 cut(s) 10, 648, 963
TseI GCWGC 3 cut(s) 77, 443, 494
Tsp45I GTSAC 3 cut(s) 10, 648, 963
TspDTI ATGAA 7 cut(s) 116, 291, 432, 821, 1032, 1047, 1092
TspMI CCCGGG 1 cut(s) 464
TspRI CASTG 2 cut(s) 151, 1005
VpaK11BI GGWCC 1 cut(s) 840
VspI ATTAAT 2 cut(s) 138, 228
XagI CCTNNNNNAGG 1 cut(s) 1137
XapI RAATTY 1 cut(s) 420
XcmI CCANNNNNNNNNTGG 2 cut(s) 379, 940
XmaI CCCGGG 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 1051
XmnI GAANNNNTTC 1 cut(s) 423
XspI CTAG 4 cut(s) 315, 477, 722, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.