Rh3DG103000

FACT complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0001181
Physical Location & Seq
Forward (+)
8305321 .. 8309812
4492 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG103000.1

Sequence Viewer

Length: 1950 bp
ATGGTTGATCCTCCTCTAAATACTAACTACAAACGTCCTACTAGGGTGACTCCTATTATGGACACGGCAGCGCGTATCGCTCAGATGTCCACCACGCATAGGAGAATTTTTGGTGAGAGATTGAAGTCCCTTTATTTGCATTGGAACAAACACCGATCTGATATGTGGGGTTGTTCCGATGTTATCGCAATTGGAAAACTACCAGCGTCAAAGGATCCGCAGTACCGCAAGTCTACGGCATTGAATGTTTGGCTGGTGGGTTTTGAGTTTCCAGAGACAATGATGGTGTTCACTAAGAAAAGAATTCATCTCTTCTGCAACCAAGGTGACTCTTTCAATCCTGCTCTTCTCAGGATGCCTGCAATGAAGGCTCTGGGTGTAGACATTGTGAGGCATGTGATACGAGAGGTTGGTGTCTACTCTGCTCTGATGGATAATTTATTGCGTGACATTTGCGCTCAAGCAAAGGCCGATGGCCACGAAATTCCTGTTGTGGGGCACATAGGAGGGGAGGTTCCTGAGGGATTTCTTTTTGAATCTTGGTCTGAAAAGCTGAAGAATGCAAATTTTCGGATGAGTGATGTGACTAATGGGTTGTCTGACTTGTTGTCTGTCAAAGACAATGAGGCGCTTGTGAATGTGAAGAGAGCTGCTTTCTTGACTACTAAGGTCATGAATAATATTGTGGTTCCAAATCTTGAGTTTGTTATTAATCACAGTGAGAAGGTAACACGTTCTTTTTTGATGGATGAGATGGTGAAGGCTATACAGGAACCCTCTAAAGCTTTTGCGAAGCTGATTAATGTAGAAAACGTTGGTATCTGTTACCCTCCTATTCTTCAGAGTGGTGTTGGTGGCAATGATGAGTTACTTTCATATGATTCTGCTAGTGTGGTTATATGTGCTTTTGGATCCCGTTATAAGAGTTACTGCTCAAATGTAGCCAGGACATTTTTGGTTGATCCCAATCCCTTTCAGAGAAAGGCACATGAAATTCTTCTCAAGGCCCATGATGCAGCCATTAGTGAGTTGAGGCCCGGGAACAAAGCTAGTTCTGCATATCAAGCAGCTCGTTCTGTCGTGGAGAAGGAGGCTCCTGAGTTAGTACCTAATCTGACAGAATCTGCTGGGACAGGCATTGGTATTGAGCTTGTTGAGTCCCGGTTGAAACTTAATGCGAACAATGACCTTGTGCTGAAAGCAGGAATGGTGTTCAATGTGTCACTTGGTTTTGAGGACTTGCAGAGTGAGAGTGGTCTTACCAATTCAAAGGATCAGAACTTCTCTTTGTTGCTAGCTGATACTGTTGTTATTAACAATGTCAAGCCAGAGGTCTTGACAGTCGAAAGTGCTAAAGCTATTAAGGTTCCTAGTAAAATGAAACAAGATGCTAATGGAACAGAAGATCTGCGGTCCAGCAAAAGGATGAGGTTCAAGCTTGACTGGAATGATGAGCTTGACGGGAACGATGAGCCCACTTTCTCTGTTGTGTCCACTCAGCCTTCCACTTTTTCCCTGGGTGTTCCATTGCTTTGGTCACATTCGGGTCTGGCACCTGCTGATGTACGGACTGACCCTTTCAATGCCAGAGAGAGGTTATCATATGCGGAAAGGGGGAAGTCCACAAGGATAAAACCCACAGAGAAAATGGATATGCTAATAGCCAAGTACTATATTGATGACACAAAGGGTCGTGTGCAGCTAACAGAGCGTACAGTTCCAGTGTCGCAGACAGAAACACCTCCATGGCAGACAGAAAGAGCTTCATATGGTATACCTTCATGGAAGAGAGAAAGATCATCGTGGAAGAGAGAAAGACCGTCTTCGTTCGTTACACCTCCATGGGTAGCAAAACCTGCATTAGGCACACTTGACTGGAAGACAGAGAGACCTGTTACACCTCCAAGGCAGAAACAAGGTGCATTTGGTTATGCTTATTGTTTCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000228 GO:0000785 GO:0000790 GO:0000791 GO:0003006 GO:0003674 GO:0003682 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005719 GO:0005730 GO:0006139 GO:0006325 GO:0006333 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010228 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031491 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032968 GO:0032991 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034724 GO:0034728 GO:0035101 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044877 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FACT-Spt16_Nlob Peptidase_M24 Rtt106 SPT16

Protein Analysis

649

Amino Acids

72.55

Weight (kDa)

8.94

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FACT-Spt16_Nlob PF14826 36 - 197 4.8e-25 FACT complex subunit SPT16 N-terminal lobe domain
Peptidase_M24 PF00557 260 - 438 1.1e-26 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 921
AarI CACCTGC 1 cut(s) 1564
Acc36I ACCTGC 2 cut(s) 1564, 1864
AccB1I GGYRCC 1 cut(s) 1552
AccI GTMKAC 4 cut(s) 233, 381, 417, 1774
AccII CGCG 1 cut(s) 73
AciI CCGC 4 cut(s) 218, 226, 1411, 1607
AclI AACGTT 1 cut(s) 813
AclWI GGATC 7 cut(s) 2, 209, 222, 906, 919, 956, 1281
AcoI YGGCCR 1 cut(s) 475
AcsI RAATTY 5 cut(s) 105, 303, 483, 565, 993
AcuI CTGAAG 2 cut(s) 575, 824
AfaI GTAC 5 cut(s) 224, 1107, 1566, 1670, 1714
AfiI CCNNNNNNNGG 5 cut(s) 99, 494, 1422, 1593, 1862
AflIII ACRYGT 1 cut(s) 731
AgsI TTSAA 9 cut(s) 124, 244, 337, 536, 1168, 1216, 1269, 1435, 1582
AhdI GACNNNNNGTC 1 cut(s) 607
AjnI CCWGG 2 cut(s) 944, 1515
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
Alw26I GTCTC 2 cut(s) 269, 1882
AlwI GGATC 7 cut(s) 2, 209, 222, 906, 919, 956, 1281
AlwNI CAGNNNCTG 1 cut(s) 1124
Ama87I CYCGRG 1 cut(s) 1037
AoxI GGCC 4 cut(s) 468, 475, 1005, 1034
ApeKI GCWGC 5 cut(s) 68, 650, 1016, 1067, 1699
ApoI RAATTY 5 cut(s) 105, 303, 483, 565, 993
AseI ATTAAT 2 cut(s) 711, 801
Asp700I GAANNNNTTC 1 cut(s) 996
AspLEI GCGC 3 cut(s) 73, 458, 631
AspS9I GGNCC 3 cut(s) 1006, 1035, 1413
AsuC2I CCSGG 3 cut(s) 1038, 1039, 1162
AsuHPI GGTGA 4 cut(s) 58, 125, 338, 769
AsuNHI GCTAGC 1 cut(s) 1294
AvaI CYCGRG 1 cut(s) 1037
AvaII GGWCC 1 cut(s) 1413
AxyI CCTNAGG 1 cut(s) 519
BaeGI GKGCMC 1 cut(s) 501
BaeI ACNNNNGTAYC 4 cut(s) 802, 835, 1293, 1326
BalI TGGCCA 1 cut(s) 477
BamHI GGATCC 2 cut(s) 214, 911
BanI GGYRCC 1 cut(s) 1552
BanII GRGCYC 1 cut(s) 1476
BbsI GAAGAC 2 cut(s) 1815, 1886
BbvI GCAGC 5 cut(s) 80, 637, 1028, 1079, 1711
BccI CCATC 5 cut(s) 277, 424, 467, 739, 748
BceAI ACGGC 2 cut(s) 81, 252
BciT130I CCWGG 2 cut(s) 946, 1517
BcnI CCSGG 3 cut(s) 1038, 1039, 1162
BcoDI GTCTC 2 cut(s) 269, 1882
BfaI CTAG 5 cut(s) 42, 888, 1050, 1295, 1371
BfoI RGCGCY 1 cut(s) 632
BfuAI ACCTGC 2 cut(s) 1564, 1864
BglII AGATCT 1 cut(s) 1405
BisI GCNGC 5 cut(s) 69, 651, 1017, 1068, 1700
BlsI GCNGC 5 cut(s) 70, 652, 1018, 1069, 1701
BmcAI AGTACT 1 cut(s) 1670
Bme1390I CCNGG 5 cut(s) 946, 1038, 1039, 1162, 1517
Bme18I GGWCC 1 cut(s) 1413
BmeRI GACNNNNNGTC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 1037
BmgT120I GGNCC 3 cut(s) 1006, 1035, 1413
BmiI GGNNCC 8 cut(s) 216, 516, 690, 774, 913, 1095, 1368, 1554
BmrFI CCNGG 5 cut(s) 946, 1038, 1039, 1162, 1517
BmsI GCATC 3 cut(s) 345, 1003, 1378
BmtI GCTAGC 1 cut(s) 1298
BpiI GAAGAC 2 cut(s) 1815, 1886
BpuEI CTTGAG 3 cut(s) 444, 719, 986
BpuMI CCSGG 3 cut(s) 1038, 1039, 1162
BsaBI GATNNNNATC 1 cut(s) 966
BsaI GGTCTC 1 cut(s) 1882
BsaJI CCNNGG 7 cut(s) 322, 1037, 1515, 1516, 1745, 1841, 1904
BsaXI ACNNNNNCTCC 2 cut(s) 498, 528
Bsc4I CCNNNNNNNGG 5 cut(s) 99, 494, 1422, 1593, 1862
Bse1I ACTGG 3 cut(s) 1448, 1721, 1880
Bse21I CCTNAGG 1 cut(s) 519
Bse3DI GCAATG 3 cut(s) 369, 865, 1526
Bse8I GATNNNNATC 1 cut(s) 966
BseBI CCWGG 2 cut(s) 946, 1517
BseDI CCNNGG 7 cut(s) 322, 1037, 1515, 1516, 1745, 1841, 1904
BseGI GGATG 4 cut(s) 360, 579, 754, 1431
BseJI GATNNNNATC 1 cut(s) 966
BseLI CCNNNNNNNGG 5 cut(s) 99, 494, 1422, 1593, 1862
BseMI GCAATG 3 cut(s) 369, 865, 1526
BseMII CTCAG 5 cut(s) 95, 364, 510, 1089, 1511
BseNI ACTGG 3 cut(s) 1448, 1721, 1880
BseSI GKGCMC 1 cut(s) 501
BseXI GCAGC 5 cut(s) 80, 637, 1028, 1079, 1711
BseYI CCCAGC 1 cut(s) 1127
BsgI GTGCAG 1 cut(s) 1718
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 4 cut(s) 470, 477, 1007, 1036
BshNI GGYRCC 1 cut(s) 1552
BsiHKCI CYCGRG 1 cut(s) 1037
BsiSI CCGG 2 cut(s) 1038, 1162
BslFI GGGAC 3 cut(s) 112, 1144, 1144
BslI CCNNNNNNNGG 5 cut(s) 99, 494, 1422, 1593, 1862
BsmAI GTCTC 2 cut(s) 269, 1882
BsmFI GGGAC 3 cut(s) 112, 1144, 1144
BsmI GAATGC 1 cut(s) 565
BsnI GGCC 4 cut(s) 470, 477, 1007, 1036
Bso31I GGTCTC 1 cut(s) 1882
BsoBI CYCGRG 1 cut(s) 1037
Bsp1286I GDGCHC 2 cut(s) 501, 1476
Bsp143I GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
Bsp19I CCATGG 2 cut(s) 1745, 1841
BspACI CCGC 4 cut(s) 218, 226, 1411, 1607
BspANI GGCC 4 cut(s) 470, 477, 1007, 1036
BspCNI CTCAG 5 cut(s) 94, 363, 511, 1090, 1510
BspFNI CGCG 1 cut(s) 73
BspHI TCATGA 1 cut(s) 672
BspLI GGNNCC 8 cut(s) 216, 516, 690, 774, 913, 1095, 1368, 1554
BspMI ACCTGC 2 cut(s) 1564, 1864
BspOI GCTAGC 1 cut(s) 1298
BspPI GGATC 7 cut(s) 2, 209, 222, 906, 919, 956, 1281
BspQI GCTCTTC 1 cut(s) 351
BspT107I GGYRCC 1 cut(s) 1552
BspTNI GGTCTC 1 cut(s) 1882
BsrDI GCAATG 3 cut(s) 369, 865, 1526
BsrI ACTGG 3 cut(s) 1448, 1721, 1880
BssECI CCNNGG 7 cut(s) 322, 1037, 1515, 1516, 1745, 1841, 1904
BssMI GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
BssNAI GTATAC 1 cut(s) 1775
BssT1I CCWWGG 4 cut(s) 322, 1745, 1841, 1904
Bst1107I GTATAC 1 cut(s) 1775
Bst2UI CCWGG 2 cut(s) 946, 1517
Bst4CI ACNGT 5 cut(s) 719, 1306, 1342, 1717, 1821
Bst6I CTCTTC 5 cut(s) 317, 351, 638, 1781, 1802
BstAPI GCANNNNNTGC 1 cut(s) 1856
BstC8I GCNNGC 2 cut(s) 360, 1296
BstDEI CTNAG 7 cut(s) 81, 294, 350, 519, 666, 1098, 1497
BstDSI CCRYGG 2 cut(s) 1745, 1841
BstENI CCTNNNNNAGG 1 cut(s) 1860
BstF5I GGATG 4 cut(s) 360, 579, 754, 1431
BstFNI CGCG 1 cut(s) 73
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 3 cut(s) 73, 458, 631
BstKTI GATC 8 cut(s) 10, 158, 217, 914, 964, 1276, 1408, 1799
BstMAI GTCTC 2 cut(s) 269, 1882
BstMBI GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
BstMWI GCNNNNNNNGC 7 cut(s) 77, 368, 1013, 1055, 1064, 1708, 1856
BstNI CCWGG 2 cut(s) 946, 1517
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 5 cut(s) 944, 1036, 1037, 1160, 1515
BstSLI GKGCMC 1 cut(s) 501
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 5 cut(s) 80, 637, 1028, 1079, 1711
BstV2I GAAGAC 2 cut(s) 1815, 1886
BstX2I RGATCY 3 cut(s) 214, 911, 1405
BstXI CCANNNNNNTGG 1 cut(s) 1533
BstYI RGATCY 3 cut(s) 214, 911, 1405
BstZ17I GTATAC 1 cut(s) 1775
Bsu36I CCTNAGG 1 cut(s) 519
BsuRI GGCC 4 cut(s) 470, 477, 1007, 1036
BtgI CCRYGG 2 cut(s) 1745, 1841
BtsCI GGATG 4 cut(s) 360, 579, 754, 1431
BtsIMutI CAGTG 2 cut(s) 724, 1728
BveI ACCTGC 2 cut(s) 1564, 1864
Cac8I GCNNGC 2 cut(s) 360, 1296
CaiI CAGNNNCTG 1 cut(s) 1124
CciI TCATGA 1 cut(s) 672
CfoI GCGC 3 cut(s) 73, 458, 631
Cfr13I GGNCC 3 cut(s) 1006, 1035, 1413
Cfr9I CCCGGG 1 cut(s) 1037
CseI GACGC 1 cut(s) 195
Csp6I GTAC 5 cut(s) 223, 1106, 1565, 1669, 1713
CviAII CATG 7 cut(s) 395, 673, 989, 1010, 1746, 1782, 1842
CviQI GTAC 5 cut(s) 223, 1106, 1565, 1669, 1713
DdeI CTNAG 7 cut(s) 81, 294, 350, 519, 666, 1098, 1497
DpnI GATC 8 cut(s) 9, 157, 216, 913, 963, 1275, 1407, 1798
DpnII GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
DriI GACNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 475
Eam1104I CTCTTC 5 cut(s) 317, 351, 638, 1781, 1802
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 5 cut(s) 317, 351, 638, 1781, 1802
Eco130I CCWWGG 4 cut(s) 322, 1745, 1841, 1904
Eco24I GRGCYC 1 cut(s) 1476
Eco31I GGTCTC 1 cut(s) 1882
Eco47I GGWCC 1 cut(s) 1413
Eco57I CTGAAG 2 cut(s) 575, 824
Eco81I CCTNAGG 1 cut(s) 519
Eco88I CYCGRG 1 cut(s) 1037
EcoNI CCTNNNNNAGG 1 cut(s) 1860
EcoRI GAATTC 1 cut(s) 303
EcoRII CCWGG 2 cut(s) 944, 1515
EcoT14I CCWWGG 4 cut(s) 322, 1745, 1841, 1904
EcoT38I GRGCYC 1 cut(s) 1476
ErhI CCWWGG 4 cut(s) 322, 1745, 1841, 1904
FaeI CATG 7 cut(s) 398, 676, 992, 1013, 1749, 1785, 1845
FalI AAGNNNNNCTT 2 cut(s) 1807, 1839
FaqI GGGAC 3 cut(s) 112, 1144, 1144
FatI CATG 7 cut(s) 394, 672, 988, 1009, 1745, 1781, 1841
FauNDI CATATG 3 cut(s) 877, 1603, 1768
FblI GTMKAC 4 cut(s) 233, 381, 417, 1774
Fnu4HI GCNGC 5 cut(s) 69, 651, 1017, 1068, 1700
FokI GGATG 4 cut(s) 367, 586, 761, 1438
FriOI GRGCYC 1 cut(s) 1476
Fsp4HI GCNGC 5 cut(s) 69, 651, 1017, 1068, 1700
FspBI CTAG 5 cut(s) 42, 888, 1050, 1295, 1371
GlaI GCGC 3 cut(s) 72, 457, 630
GluI GCNGC 5 cut(s) 69, 651, 1017, 1068, 1700
GsaI CCCAGC 1 cut(s) 1131
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 4 cut(s) 470, 477, 1007, 1036
HapII CCGG 2 cut(s) 1038, 1162
HgaI GACGC 1 cut(s) 195
HhaI GCGC 3 cut(s) 73, 458, 631
Hin1II CATG 7 cut(s) 398, 676, 992, 1013, 1749, 1785, 1845
Hin6I GCGC 3 cut(s) 71, 456, 629
HinP1I GCGC 3 cut(s) 71, 456, 629
HindIII AAGCTT 2 cut(s) 783, 1436
HinfI GANTC 6 cut(s) 49, 329, 536, 881, 1121, 1157
HpaII CCGG 2 cut(s) 1038, 1162
HphI GGTGA 4 cut(s) 58, 125, 338, 769
Hpy166II GTNNAC 8 cut(s) 90, 234, 291, 382, 418, 1494, 1623, 1775
Hpy188III TCNNGA 8 cut(s) 272, 352, 518, 658, 673, 698, 1097, 1336
Hpy8I GTNNAC 8 cut(s) 90, 234, 291, 382, 418, 1494, 1623, 1775
HpyAV CCTTC 6 cut(s) 361, 718, 754, 1081, 1512, 1788
HpyCH4III ACNGT 5 cut(s) 719, 1306, 1342, 1717, 1821
HpyCH4IV ACGT 3 cut(s) 34, 733, 813
HpyF10VI GCNNNNNNNGC 7 cut(s) 77, 368, 1013, 1055, 1064, 1708, 1856
HpyF3I CTNAG 7 cut(s) 81, 294, 350, 519, 666, 1098, 1497
HpySE526I ACGT 3 cut(s) 34, 733, 813
Hsp92II CATG 7 cut(s) 398, 676, 992, 1013, 1749, 1785, 1845
HspAI GCGC 3 cut(s) 71, 456, 629
Kzo9I GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 1099
Lsp1109I GCAGC 5 cut(s) 80, 637, 1028, 1079, 1711
LweI GCATC 3 cut(s) 345, 1003, 1378
MaeI CTAG 5 cut(s) 42, 888, 1050, 1295, 1371
MaeII ACGT 3 cut(s) 34, 733, 813
MalI GATC 8 cut(s) 9, 157, 216, 913, 963, 1275, 1407, 1798
MboI GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
MfeI CAATTG 1 cut(s) 189
MflI RGATCY 3 cut(s) 214, 911, 1405
MhlI GDGCHC 2 cut(s) 501, 1476
MlsI TGGCCA 1 cut(s) 477
MluCI AATT 8 cut(s) 105, 189, 303, 436, 483, 565, 993, 1264
MluNI TGGCCA 1 cut(s) 477
MlyI GAGTC 3 cut(s) 43, 323, 1166
Mox20I TGGCCA 1 cut(s) 477
MroXI GAANNNNTTC 1 cut(s) 996
MscI TGGCCA 1 cut(s) 477
MseI TTAA 6 cut(s) 711, 801, 1173, 1314, 1362, 1948
MslI CAYNNNNRTG 2 cut(s) 1744, 1840
Msp20I TGGCCA 1 cut(s) 477
MspI CCGG 2 cut(s) 1038, 1162
MspR9I CCNGG 5 cut(s) 946, 1038, 1039, 1162, 1517
MunI CAATTG 1 cut(s) 189
Mva1269I GAATGC 1 cut(s) 565
MvaI CCWGG 2 cut(s) 946, 1517
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 7 cut(s) 77, 368, 1013, 1055, 1064, 1708, 1856
NciI CCSGG 3 cut(s) 1038, 1039, 1162
NcoI CCATGG 2 cut(s) 1745, 1841
NdeI CATATG 3 cut(s) 877, 1603, 1768
NdeII GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
NheI GCTAGC 1 cut(s) 1294
NlaIII CATG 7 cut(s) 398, 676, 992, 1013, 1749, 1785, 1845
NlaIV GGNNCC 8 cut(s) 216, 516, 690, 774, 913, 1095, 1368, 1554
NmuCI GTSAC 6 cut(s) 46, 326, 446, 583, 1221, 1536
NspI RCATGY 1 cut(s) 398
PagI TCATGA 1 cut(s) 672
PaqCI CACCTGC 1 cut(s) 1564
PasI CCCWGGG 1 cut(s) 1516
PciSI GCTCTTC 1 cut(s) 351
PctI GAATGC 1 cut(s) 565
PdmI GAANNNNTTC 1 cut(s) 996
PfeI GAWTC 3 cut(s) 536, 881, 1121
PkrI GCNGC 5 cut(s) 70, 652, 1018, 1069, 1701
PleI GAGTC 3 cut(s) 43, 323, 1165
PpsI GAGTC 3 cut(s) 43, 323, 1165
PshBI ATTAAT 2 cut(s) 711, 801
PsiI TTATAA 1 cut(s) 921
Psp1406I AACGTT 1 cut(s) 813
Psp6I CCWGG 2 cut(s) 944, 1515
PspFI CCCAGC 1 cut(s) 1127
PspGI CCWGG 2 cut(s) 944, 1515
PspN4I GGNNCC 8 cut(s) 216, 516, 690, 774, 913, 1095, 1368, 1554
PspPI GGNCC 3 cut(s) 1006, 1035, 1413
PstNI CAGNNNCTG 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 214, 911, 1405
RsaI GTAC 5 cut(s) 224, 1107, 1566, 1670, 1714
RsaNI GTAC 5 cut(s) 223, 1106, 1565, 1669, 1713
RseI CAYNNNNRTG 2 cut(s) 1744, 1840
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 6 cut(s) 711, 801, 1173, 1314, 1362, 1948
SatI GCNGC 5 cut(s) 69, 651, 1017, 1068, 1700
Sau3AI GATC 8 cut(s) 7, 155, 214, 911, 961, 1273, 1405, 1796
Sau96I GGNCC 3 cut(s) 1006, 1035, 1413
ScaI AGTACT 1 cut(s) 1670
SchI GAGTC 3 cut(s) 43, 323, 1166
ScrFI CCNGG 5 cut(s) 946, 1038, 1039, 1162, 1517
SduI GDGCHC 2 cut(s) 501, 1476
SfaNI GCATC 3 cut(s) 345, 1003, 1378
SinI GGWCC 1 cut(s) 1413
SmaI CCCGGG 1 cut(s) 1039
SmiMI CAYNNNNRTG 2 cut(s) 1744, 1840
SmlI CTYRAG 3 cut(s) 459, 698, 1001
SmoI CTYRAG 3 cut(s) 459, 698, 1001
Sse9I AATT 8 cut(s) 105, 189, 303, 436, 483, 565, 993, 1264
SsiI CCGC 4 cut(s) 218, 226, 1411, 1607
SspI AATATT 1 cut(s) 682
SspMI CTAG 5 cut(s) 42, 888, 1050, 1295, 1371
StyD4I CCNGG 5 cut(s) 944, 1036, 1037, 1160, 1515
StyI CCWWGG 4 cut(s) 322, 1745, 1841, 1904
TaaI ACNGT 5 cut(s) 719, 1306, 1342, 1717, 1821
TaiI ACGT 3 cut(s) 37, 736, 816
TaqI TCGA 1 cut(s) 1344
TasI AATT 8 cut(s) 105, 189, 303, 436, 483, 565, 993, 1264
TatI WGTACW 1 cut(s) 1668
TfiI GAWTC 3 cut(s) 536, 881, 1121
Tru1I TTAA 6 cut(s) 711, 801, 1173, 1314, 1362, 1948
Tru9I TTAA 6 cut(s) 711, 801, 1173, 1314, 1362, 1948
TscAI CASTG 2 cut(s) 724, 1728
TseFI GTSAC 6 cut(s) 46, 326, 446, 583, 1221, 1536
TseI GCWGC 5 cut(s) 68, 650, 1016, 1067, 1699
Tsp45I GTSAC 6 cut(s) 46, 326, 446, 583, 1221, 1536
TspDTI ATGAA 8 cut(s) 296, 380, 689, 864, 1005, 1394, 1755, 1770
TspGWI ACGGA 1 cut(s) 1582
TspMI CCCGGG 1 cut(s) 1037
TspRI CASTG 2 cut(s) 724, 1728
VpaK11BI GGWCC 1 cut(s) 1413
VspI ATTAAT 2 cut(s) 711, 801
XagI CCTNNNNNAGG 1 cut(s) 1860
XapI RAATTY 5 cut(s) 105, 303, 483, 565, 993
XceI RCATGY 1 cut(s) 398
XcmI CCANNNNNNNNNTGG 3 cut(s) 952, 1513, 1645
XmaI CCCGGG 1 cut(s) 1037
XmiI GTMKAC 4 cut(s) 233, 381, 417, 1774
XmnI GAANNNNTTC 1 cut(s) 996
XspI CTAG 5 cut(s) 42, 888, 1050, 1295, 1371
ZrmI AGTACT 1 cut(s) 1670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.