Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0004838

Physical Location & Seq

Genomic Coordinates Reverse (-)

16866272 .. 16866998

Gene Structure 727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g25061.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGTAGCTGAAACAAACAATAACAATGTTCTATCTTCACTAAACAATAACAATGAAATGTTTGGTTTTGGTAGCGCCAGTTGTGACGCCGTCATCCACCGTTACCTTGCGGAGAGCGACCCTCATGCTGCAGCACTAGAGTCCGATCGTCTTAACAAAAACACCACCGTGAACTCTGCTAATTTTGCAAAGCTAAGACAACAGTTATTGGAGGCTCGGAGGCAGCTGGAGGAGGAGAATAAACGAGCCAAAATGATACAACAGAGGAAACATGAGACGAGAGGGGCTGTTCCCGCCGAGTTGTGGTGGGAGGAGGAGATGATGGATCAAACTCTTAAGGAGTTAGACTTAGAGAGTTACTCTAAGGCGTTGCATAGGCTGAAGAGTGATGTGGAGAGGAGAGCTCAACAGAAGATTAAGAATCTTCCATGCAGCTATACGTCGCTAATGGATGGTAGAGTTGTCATGGGTGAGAATTATATGAATAATAATAACAGCAATATGAAGAATGTAGTTGGATTTATCATAGTCCTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04011 ko04111 map04011 map04111

Pfam Domains

Protein Families

SRF-TF

Protein Analysis

180

Amino Acids

20.52

Weight (kDa)

6.44

Isoelectric Point (pI)

42.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004838)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25061 FvH4_6g35390 FvH4_6g35690
malus_domestica	MD09G1170500.v1.1 MD09G1176200.v1.1 MD17G1150800.v1.1
prunus_persica	Prupe.3G032000_v2.0.a1 Prupe.3G035200_v2.0.a1
pyrus_communis	pycom09g09140 pycom17g14390
rosa_chinensis	RchiOBHm_Chr2g0147681
rosa_laevigata	RLG00000020226 RLG00000020270
rosa_multiflora	Rmu_sc0000308.1_g000012 Rmu_sc0000566.1_g000017
rosa_roxburghii	Rroxscaffold_2G00099390 Rroxscaffold_2G00099860
rosa_rugosa	Rorug02G0397400 Rorug02G0400800
rosa_samantha	Rh2AG453800 Rh2AG453900 Rh2AG458200 Rh2BG466600 Rh2BG470900 Rh2CG440900 Rh2CG441000 Rh2CG445600 Rh2DG475500 Rh2DG480200
rosa_wichuraiana	Rw0G022040 Rw2G037060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	110, 294
AclWI	GGATC	1 cut(s)	333
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	1 cut(s)	87
AfiI	CCNNNNNNNGG	1 cut(s)	303
AflII	CTTAAG	1 cut(s)	335
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	5 cut(s)	8, 193, 226, 404, 435
AluI	AGCT	5 cut(s)	8, 193, 226, 404, 435
Alw21I	GWGCWC	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	269
AlwI	GGATC	1 cut(s)	333
ApeKI	GCWGC	4 cut(s)	128, 131, 223, 432
AspLEI	GCGC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	482
BanII	GRGCYC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	406
BbvI	GCAGC	4 cut(s)	115, 143, 235, 444
BccI	CCATC	2 cut(s)	316, 446
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	107, 141
BcoDI	GTCTC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	335
BisI	GCNGC	4 cut(s)	129, 132, 224, 433
BlsI	GCNGC	4 cut(s)	130, 133, 225, 434
BplI	GAGNNNNNCTC	6 cut(s)	106, 138, 344, 376, 388, 420
BpmI	CTGGAG	1 cut(s)	248
BsaHI	GRCGYC	1 cut(s)	87
Bsc4I	CCNNNNNNNGG	1 cut(s)	303
Bse1I	ACTGG	1 cut(s)	78
BseGI	GGATG	2 cut(s)	93, 457
BseLI	CCNNNNNNNGG	1 cut(s)	303
BseNI	ACTGG	1 cut(s)	78
BseRI	GAGGAG	5 cut(s)	245, 248, 326, 329, 412
BseXI	GCAGC	4 cut(s)	115, 143, 235, 444
Bsh1285I	CGRYCG	1 cut(s)	148
BsiEI	CGRYCG	1 cut(s)	148
BsiHKAI	GWGCWC	1 cut(s)	406
BslI	CCNNNNNNNGG	1 cut(s)	303
BsmAI	GTCTC	1 cut(s)	269
BsmBI	CGTCTC	1 cut(s)	269
Bsp1286I	GDGCHC	1 cut(s)	406
Bsp143I	GATC	2 cut(s)	145, 325
BspACI	CCGC	2 cut(s)	110, 294
BspMAI	CTGCAG	1 cut(s)	133
BspPI	GGATC	1 cut(s)	333
BspTI	CTTAAG	1 cut(s)	335
BsrI	ACTGG	1 cut(s)	78
BssMI	GATC	2 cut(s)	145, 325
BssNI	GRCGYC	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	101, 169, 204
Bst6I	CTCTTC	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	1 cut(s)	335
BstDEI	CTNAG	3 cut(s)	194, 349, 363
BstF5I	GGATG	2 cut(s)	93, 457
BstH2I	RGCGCY	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	77
BstKTI	GATC	2 cut(s)	148, 328
BstMAI	GTCTC	1 cut(s)	269
BstMBI	GATC	2 cut(s)	145, 325
BstMCI	CGRYCG	1 cut(s)	148
BstMWI	GCNNNNNNNGC	2 cut(s)	185, 293
BstSFI	CTRYAG	1 cut(s)	129
BstV1I	GCAGC	4 cut(s)	115, 143, 235, 444
BtsCI	GGATG	2 cut(s)	93, 457
CfoI	GCGC	1 cut(s)	77
CseI	GACGC	1 cut(s)	95
CviAII	CATG	4 cut(s)	125, 272, 429, 466
CviJI	RGCY	9 cut(s)	8, 193, 215, 226, 248, 287, 379, 404, 435
CviKI_1	RGCY	9 cut(s)	8, 193, 215, 226, 248, 287, 379, 404, 435
DdeI	CTNAG	3 cut(s)	194, 349, 363
DpnI	GATC	2 cut(s)	147, 327
DpnII	GATC	2 cut(s)	145, 325
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Ecl136II	GAGCTC	1 cut(s)	404
Eco24I	GRGCYC	1 cut(s)	406
Eco53kI	GAGCTC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	404
EcoT38I	GRGCYC	1 cut(s)	406
Esp3I	CGTCTC	1 cut(s)	269
FaeI	CATG	4 cut(s)	128, 275, 432, 469
FatI	CATG	4 cut(s)	124, 271, 428, 465
FauI	CCCGC	1 cut(s)	301
Fnu4HI	GCNGC	4 cut(s)	129, 132, 224, 433
FokI	GGATG	2 cut(s)	80, 464
FriOI	GRGCYC	1 cut(s)	406
Fsp4HI	GCNGC	4 cut(s)	129, 132, 224, 433
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	76
GluI	GCNGC	4 cut(s)	129, 132, 224, 433
GsuI	CTGGAG	1 cut(s)	248
HaeII	RGCGCY	1 cut(s)	78
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	77
Hin1I	GRCGYC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	128, 275, 432, 469
Hin6I	GCGC	1 cut(s)	75
HinP1I	GCGC	1 cut(s)	75
HinfI	GANTC	2 cut(s)	140, 421
HphI	GGTGA	1 cut(s)	482
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	2 cut(s)	145, 219
Hpy188III	TCNNGA	1 cut(s)	532
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	445
HpyCH4III	ACNGT	3 cut(s)	101, 169, 204
HpyCH4IV	ACGT	1 cut(s)	440
HpyCH4V	TGCA	4 cut(s)	131, 188, 373, 432
HpyF10VI	GCNNNNNNNGC	2 cut(s)	185, 293
HpyF3I	CTNAG	3 cut(s)	194, 349, 363
HpySE526I	ACGT	1 cut(s)	440
Hsp92I	GRCGYC	1 cut(s)	87
Hsp92II	CATG	4 cut(s)	128, 275, 432, 469
HspAI	GCGC	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	145, 325
LpnPI	CCDG	2 cut(s)	91, 212
Lsp1109I	GCAGC	4 cut(s)	115, 143, 235, 444
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	440
MaeIII	GTNAC	3 cut(s)	83, 101, 356
MalI	GATC	2 cut(s)	147, 327
MboI	GATC	2 cut(s)	145, 325
MboII	GAAGA	5 cut(s)	27, 394, 416, 424, 517
MhlI	GDGCHC	1 cut(s)	406
MluCI	AATT	3 cut(s)	181, 475, 535
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	496
MseI	TTAA	4 cut(s)	153, 336, 417, 538
MslI	CAYNNNNRTG	1 cut(s)	167
MspA1I	CMGCKG	1 cut(s)	226
MspCI	CTTAAG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	185, 293
NdeII	GATC	2 cut(s)	145, 325
NlaIII	CATG	4 cut(s)	128, 275, 432, 469
NmeAIII	GCCGAG	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	83
OliI	CACNNNNGTG	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	421
PflFI	GACNNNGTC	1 cut(s)	89
PkrI	GCNGC	4 cut(s)	130, 133, 225, 434
Ple19I	CGATCG	1 cut(s)	148
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	406
PstI	CTGCAG	1 cut(s)	133
PsyI	GACNNNGTC	1 cut(s)	89
PvuI	CGATCG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	226
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	406
SaqAI	TTAA	4 cut(s)	153, 336, 417, 538
SatI	GCNGC	4 cut(s)	129, 132, 224, 433
Sau3AI	GATC	2 cut(s)	145, 325
SchI	GAGTC	1 cut(s)	149
SduI	GDGCHC	1 cut(s)	406
SetI	ASST	7 cut(s)	10, 108, 195, 228, 406, 437, 443
SfcI	CTRYAG	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	167
SmlI	CTYRAG	1 cut(s)	335
SmoI	CTYRAG	1 cut(s)	335
Sse9I	AATT	3 cut(s)	181, 475, 535
SsiI	CCGC	2 cut(s)	110, 294
SspMI	CTAG	1 cut(s)	137
SstI	GAGCTC	1 cut(s)	406
TaaI	ACNGT	3 cut(s)	101, 169, 204
TaiI	ACGT	1 cut(s)	443
TasI	AATT	3 cut(s)	181, 475, 535
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	4 cut(s)	153, 336, 417, 538
Tru9I	TTAA	4 cut(s)	153, 336, 417, 538
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	4 cut(s)	128, 131, 223, 432
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	3 cut(s)	69, 497, 518
Tth111I	GACNNNGTC	1 cut(s)	89
Vha464I	CTTAAG	1 cut(s)	335
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.