Rh2CG441000

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004838
Physical Location & Seq
Reverse (-)
59769424 .. 59769927
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG441000.1

Sequence Viewer

Length: 504 bp
ATGGCTCCCTTTGTTGCAGAGAGTACCAGCAATTCCATTGGCACAAAAAAGAAAACCCTAGGCCGGAGAAAAGTTGAAATGAAGAAGGTAGAAGCACTTGACCACCGCCACGTCACTTTCTCCAAGCGCAAGAAAAGACTTTTCCAAAAAGCCGACCAACTCAGCAGCCTCACTGGCACCGAAATCGCGGTGGTCGTTGTTTCCGAATGCGGCAGGGTTTTTGGCTTCGGCACCCCAAGCTGTGATGCCGTCACCAATCGTTACCTTGCCGGATTTTCTTCTAACCAAAATGCCAATTGCATCAGTTGTCAAGACAATATTGGATCTATGAATGTGGAAAGCATTCCTTTGAAGAGTTTAAACTGTTCCCAAAATGACAATGTCCATTATCAAAACAATGGAGCCGTAGTCGGATCTATGATAGTTGAAACCACTCCTTCGACTTCGAACTGTTCTCTGAATGAAAACAACGCTAGCCGCTGTGATCAGATGTATGATAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

167

Amino Acids

18.2

Weight (kDa)

8.7

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 34 - 76 2e-16 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 176, 230
AccII CGCG 1 cut(s) 188
AciI CCGC 4 cut(s) 106, 188, 210, 478
AclWI GGATC 2 cut(s) 331, 421
AfaI GTAC 1 cut(s) 25
AfiI CCNNNNNNNGG 1 cut(s) 63
AgsI TTSAA 3 cut(s) 77, 352, 428
AjiI CACGTC 1 cut(s) 112
AluBI AGCT 2 cut(s) 240, 501
AluI AGCT 2 cut(s) 240, 501
AlwI GGATC 2 cut(s) 331, 421
AoxI GGCC 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 165
Asp700I GAANNNNTTC 1 cut(s) 342
AspA2I CCTAGG 1 cut(s) 58
AspLEI GCGC 1 cut(s) 129
AsuHPI GGTGA 1 cut(s) 244
AsuII TTCGAA 1 cut(s) 446
AsuNHI GCTAGC 1 cut(s) 473
AvrII CCTAGG 1 cut(s) 58
BanI GGYRCC 2 cut(s) 176, 230
BbvI GCAGC 1 cut(s) 177
BceAI ACGGC 2 cut(s) 233, 389
BcgI CGANNNNNNTGC 2 cut(s) 166, 200
BclI TGATCA 1 cut(s) 484
BfaI CTAG 2 cut(s) 59, 474
BglI GCCNNNNNGGC 1 cut(s) 174
BisI GCNGC 3 cut(s) 166, 211, 478
BlnI CCTAGG 1 cut(s) 58
BlsI GCNGC 3 cut(s) 167, 212, 479
BmgBI CACGTC 1 cut(s) 112
BmiI GGNNCC 4 cut(s) 6, 178, 232, 403
BmsI GCATC 2 cut(s) 235, 309
BmtI GCTAGC 1 cut(s) 477
Bpu14I TTCGAA 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 58
BsaXI ACNNNNNCTCC 2 cut(s) 393, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 178
BseXI GCAGC 1 cut(s) 177
Bsh1236I CGCG 1 cut(s) 188
BshFI GGCC 1 cut(s) 63
BshNI GGYRCC 2 cut(s) 176, 230
BsiSI CCGG 2 cut(s) 64, 270
BslI CCNNNNNNNGG 1 cut(s) 63
BsmI GAATGC 2 cut(s) 212, 342
BsnI GGCC 1 cut(s) 63
Bsp119I TTCGAA 1 cut(s) 446
Bsp143I GATC 3 cut(s) 323, 413, 484
BspACI CCGC 4 cut(s) 106, 188, 210, 478
BspANI GGCC 1 cut(s) 63
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 188
BspLI GGNNCC 4 cut(s) 6, 178, 232, 403
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 331, 421
BspT104I TTCGAA 1 cut(s) 446
BspT107I GGYRCC 2 cut(s) 176, 230
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 3 cut(s) 323, 413, 484
BssT1I CCWWGG 1 cut(s) 58
Bst4CI ACNGT 2 cut(s) 365, 452
Bst6I CTCTTC 1 cut(s) 347
BstBI TTCGAA 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 475
BstDEI CTNAG 1 cut(s) 161
BstFNI CGCG 1 cut(s) 188
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 326, 416, 487
BstMBI GATC 3 cut(s) 323, 413, 484
BstMWI GCNNNNNNNGC 2 cut(s) 174, 237
BstUI CGCG 1 cut(s) 188
BstV1I GCAGC 1 cut(s) 177
BstX2I RGATCY 2 cut(s) 323, 413
BstYI RGATCY 2 cut(s) 323, 413
BsuRI GGCC 1 cut(s) 63
BtrI CACGTC 1 cut(s) 112
BtsIMutI CAGTG 1 cut(s) 171
Cac8I GCNNGC 1 cut(s) 475
CfoI GCGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 24
CviJI RGCY 9 cut(s) 5, 63, 152, 168, 225, 240, 404, 477, 501
CviKI_1 RGCY 9 cut(s) 5, 63, 152, 168, 225, 240, 404, 477, 501
CviQI GTAC 1 cut(s) 24
DdeI CTNAG 1 cut(s) 161
DpnI GATC 3 cut(s) 325, 415, 486
DpnII GATC 3 cut(s) 323, 413, 484
DraI TTTAAA 1 cut(s) 360
Eam1104I CTCTTC 1 cut(s) 347
EarI CTCTTC 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 58
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaiI YATR 3 cut(s) 329, 419, 495
FalI AAGNNNNNCTT 2 cut(s) 331, 363
FbaI TGATCA 1 cut(s) 484
Fnu4HI GCNGC 3 cut(s) 166, 211, 478
Fsp4HI GCNGC 3 cut(s) 166, 211, 478
FspBI CTAG 2 cut(s) 59, 474
GlaI GCGC 1 cut(s) 128
GluI GCNGC 3 cut(s) 166, 211, 478
HaeIII GGCC 1 cut(s) 63
HapII CCGG 2 cut(s) 64, 270
HhaI GCGC 1 cut(s) 129
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HpaII CCGG 2 cut(s) 64, 270
HphI GGTGA 1 cut(s) 244
Hpy188I TCNGA 4 cut(s) 205, 413, 459, 489
Hpy188III TCNNGA 1 cut(s) 311
HpyAV CCTTC 2 cut(s) 79, 447
HpyCH4III ACNGT 2 cut(s) 365, 452
HpyCH4IV ACGT 1 cut(s) 111
HpyCH4V TGCA 2 cut(s) 17, 300
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 237
HpyF3I CTNAG 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 111
HspAI GCGC 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 484
Kzo9I GATC 3 cut(s) 323, 413, 484
LmnI GCTCC 2 cut(s) 10, 401
LpnPI CCDG 5 cut(s) 40, 77, 159, 199, 283
Lsp1109I GCAGC 1 cut(s) 177
LweI GCATC 2 cut(s) 235, 309
MaeI CTAG 2 cut(s) 59, 474
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 3 cut(s) 112, 250, 260
MalI GATC 3 cut(s) 325, 415, 486
MboI GATC 3 cut(s) 323, 413, 484
MboII GAAGA 3 cut(s) 94, 270, 364
MfeI CAATTG 1 cut(s) 295
MflI RGATCY 2 cut(s) 323, 413
MluCI AATT 2 cut(s) 31, 295
MmeI TCCRAC 1 cut(s) 391
MnlI CCTC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 342
MseI TTAA 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 480
MspI CCGG 2 cut(s) 64, 270
MssI GTTTAAAC 1 cut(s) 360
MunI CAATTG 1 cut(s) 295
Mva1269I GAATGC 2 cut(s) 212, 342
MvnI CGCG 1 cut(s) 188
MwoI GCNNNNNNNGC 2 cut(s) 174, 237
NdeII GATC 3 cut(s) 323, 413, 484
NheI GCTAGC 1 cut(s) 473
NlaIV GGNNCC 4 cut(s) 6, 178, 232, 403
NmuCI GTSAC 2 cut(s) 112, 250
NspV TTCGAA 1 cut(s) 446
PcsI WCGNNNNNNNCGW 2 cut(s) 192, 201
PctI GAATGC 2 cut(s) 212, 342
PdmI GAANNNNTTC 1 cut(s) 342
PflFI GACNNNGTC 1 cut(s) 380
PkrI GCNGC 3 cut(s) 167, 212, 479
PmeI GTTTAAAC 1 cut(s) 360
PspN4I GGNNCC 4 cut(s) 6, 178, 232, 403
PsuI RGATCY 2 cut(s) 323, 413
PsyI GACNNNGTC 1 cut(s) 380
RsaI GTAC 1 cut(s) 25
RsaNI GTAC 1 cut(s) 24
SaqAI TTAA 1 cut(s) 359
SatI GCNGC 3 cut(s) 166, 211, 478
Sau3AI GATC 3 cut(s) 323, 413, 484
SetI ASST 5 cut(s) 90, 114, 242, 267, 503
SfaNI GCATC 2 cut(s) 235, 309
SfuI TTCGAA 1 cut(s) 446
Sse9I AATT 2 cut(s) 31, 295
SsiI CCGC 4 cut(s) 106, 188, 210, 478
SspI AATATT 1 cut(s) 319
SspMI CTAG 2 cut(s) 59, 474
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 2 cut(s) 365, 452
TaiI ACGT 1 cut(s) 114
TaqI TCGA 2 cut(s) 440, 446
TasI AATT 2 cut(s) 31, 295
TauI GCSGC 2 cut(s) 213, 480
Tru1I TTAA 1 cut(s) 359
Tru9I TTAA 1 cut(s) 359
TscAI CASTG 1 cut(s) 178
TseFI GTSAC 2 cut(s) 112, 250
TseI GCWGC 1 cut(s) 165
Tsp45I GTSAC 2 cut(s) 112, 250
TspDTI ATGAA 3 cut(s) 95, 344, 477
TspRI CASTG 1 cut(s) 178
Tth111I GACNNNGTC 1 cut(s) 380
XmaJI CCTAGG 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 342
XspI CTAG 2 cut(s) 59, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.