FvH4_6g35690

transcription regulatory region sequence-specific DNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004838
Physical Location & Seq
Forward (+)
28174434 .. 28175572
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g35690.t1

Sequence Viewer

Length: 702 bp
ATGGCTAAAACAAACAATAACAATGTTCTATCTTCCTCCGTGGTTGAACTAAACAATAGCAATGAACTGCCACCAGTGAAGAAGACCAAAGGCCGAAGAAGGGTGGAAATCAAGAAGGTGGAAGCAGCTAGCAACCGCCATGTCACATTCTCAAAGCGCAAGAAGGGCCTTTTCAACAAGGCAGCAGAGCTAAGCCTCTTGACCGGCGCAGAAACCGCCGCAATAGTAGTATCTGGCAATGGCAGGATGTTTGGCTTCGGTAGCTCCAGTTGTGACGCCGTCATCCACCGTTACCTTACAGAGAGCAACCCTCAAGTAGCATTGGAGTCAGATCGTCGCAACAAAAACGTTAACATCGCCGTGAACTCTGCGCATTTGGCAAAGCTAAGGCAGCAGTTATTGGAGGCCCGGAGGCAGCTGGAAGAGGAGAAGAAGCGAGCCACAATGATTCAACAAAGGAAACAGGAGGCGGGAGGGGCTGTACCAGCCAAGTTGTGGTGGGAGGAGGAGATGATGGATCAAAGTCCGAAGGAGTTAGAGAGTTACTCTGAGGCGTTGCATAGGCTGAAGAGTGATGTGGAGAGGAGAGCTCAACAGAAGATTATGAATCTTCCATGCAGCTATACGTCGCTAATGGATGGTAGAGTTGCCATAGGTGAGAATTACATGAATAATAATAATAGCAATATGAAGAATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04011 ko04111 map04011 map04111
Pfam Domains
Protein Families
SRF-TF

Protein Analysis

234

Amino Acids

26.25

Weight (kDa)

9.79

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SRF-TF PF00319 39 - 86 5.9e-18 SRF-type transcription factor (DNA-binding and dimerisation domain)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 372
AccB7I CCANNNNNTGG 1 cut(s) 495
AciI CCGC 4 cut(s) 136, 216, 219, 470
AclI AACGTT 1 cut(s) 348
AclWI GGATC 1 cut(s) 525
AcuI CTGAAG 1 cut(s) 587
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 1 cut(s) 483
AfiI CCNNNNNNNGG 2 cut(s) 100, 495
AgsI TTSAA 3 cut(s) 47, 175, 452
AluBI AGCT 7 cut(s) 128, 190, 264, 385, 418, 590, 621
AluI AGCT 7 cut(s) 128, 190, 264, 385, 418, 590, 621
Alw21I GWGCWC 1 cut(s) 592
AlwI GGATC 1 cut(s) 525
AoxI GGCC 3 cut(s) 91, 166, 405
ApeKI GCWGC 5 cut(s) 125, 182, 391, 415, 618
AspLEI GCGC 3 cut(s) 159, 209, 373
AspS9I GGNCC 2 cut(s) 166, 406
AsuC2I CCSGG 1 cut(s) 409
AsuHPI GGTGA 1 cut(s) 668
AsuNHI GCTAGC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 592
BbsI GAAGAC 1 cut(s) 89
Bbv12I GWGCWC 1 cut(s) 592
BbvI GCAGC 5 cut(s) 137, 194, 403, 427, 630
BccI CCATC 2 cut(s) 508, 632
BceAI ACGGC 2 cut(s) 263, 344
BcnI CCSGG 1 cut(s) 409
BfaI CTAG 1 cut(s) 129
BisI GCNGC 6 cut(s) 126, 183, 219, 392, 416, 619
BlpI GCTNAGC 1 cut(s) 191
BlsI GCNGC 6 cut(s) 127, 184, 220, 393, 417, 620
Bme1390I CCNGG 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 166, 406
BmrFI CCNGG 1 cut(s) 409
BmtI GCTAGC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 89
BplI GAGNNNNNCTC 6 cut(s) 295, 327, 530, 562, 574, 606
BpmI CTGGAG 1 cut(s) 250
Bpu10I CCTNAGC 1 cut(s) 386
Bpu1102I GCTNAGC 1 cut(s) 191
BpuEI CTTGAG 1 cut(s) 297
BpuMI CCSGG 1 cut(s) 409
BsaHI GRCGYC 1 cut(s) 276
BsaJI CCNNGG 1 cut(s) 39
BsaXI ACNNNNNCTCC 2 cut(s) 465, 495
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 495
Bse118I RCCGGY 1 cut(s) 203
Bse1I ACTGG 2 cut(s) 74, 267
Bse3DI GCAATG 2 cut(s) 67, 244
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 3 cut(s) 252, 282, 643
BseLI CCNNNNNNNGG 2 cut(s) 100, 495
BseMI GCAATG 2 cut(s) 67, 244
BseMII CTCAG 1 cut(s) 540
BseNI ACTGG 2 cut(s) 74, 267
BseRI GAGGAG 4 cut(s) 440, 518, 521, 598
BseXI GCAGC 5 cut(s) 137, 194, 403, 427, 630
BshFI GGCC 3 cut(s) 93, 168, 407
BsiHKAI GWGCWC 1 cut(s) 592
BsiSI CCGG 2 cut(s) 204, 409
BslI CCNNNNNNNGG 2 cut(s) 100, 495
BsnI GGCC 3 cut(s) 93, 168, 407
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 2 cut(s) 331, 517
Bsp1720I GCTNAGC 1 cut(s) 191
BspACI CCGC 4 cut(s) 136, 216, 219, 470
BspANI GGCC 3 cut(s) 93, 168, 407
BspCNI CTCAG 1 cut(s) 541
BspOI GCTAGC 1 cut(s) 132
BspPI GGATC 1 cut(s) 525
BsrDI GCAATG 2 cut(s) 67, 244
BsrFI RCCGGY 1 cut(s) 203
BsrI ACTGG 2 cut(s) 74, 267
BssAI RCCGGY 1 cut(s) 203
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 2 cut(s) 331, 517
BssNI GRCGYC 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 290
Bst6I CTCTTC 2 cut(s) 417, 563
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 2 cut(s) 130, 438
BstDEI CTNAG 3 cut(s) 191, 386, 549
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 3 cut(s) 252, 282, 643
BstHHI GCGC 3 cut(s) 159, 209, 373
BstKTI GATC 2 cut(s) 334, 520
BstMBI GATC 2 cut(s) 331, 517
BstMWI GCNNNNNNNGC 7 cut(s) 165, 215, 261, 377, 391, 476, 485
BstSCI CCNGG 1 cut(s) 407
BstV1I GCAGC 5 cut(s) 137, 194, 403, 427, 630
BstV2I GAAGAC 1 cut(s) 89
BsuRI GGCC 3 cut(s) 93, 168, 407
BtgI CCRYGG 1 cut(s) 39
BtgZI GCGATG 1 cut(s) 340
BtsCI GGATG 3 cut(s) 252, 282, 643
BtsIMutI CAGTG 1 cut(s) 81
Cac8I GCNNGC 2 cut(s) 130, 438
CfoI GCGC 3 cut(s) 159, 209, 373
Cfr10I RCCGGY 1 cut(s) 203
Cfr13I GGNCC 2 cut(s) 166, 406
CseI GACGC 1 cut(s) 284
Csp6I GTAC 1 cut(s) 482
CviAII CATG 3 cut(s) 140, 615, 667
CviQI GTAC 1 cut(s) 482
DdeI CTNAG 3 cut(s) 191, 386, 549
DpnI GATC 2 cut(s) 333, 519
DpnII GATC 2 cut(s) 331, 517
Eam1104I CTCTTC 2 cut(s) 417, 563
EarI CTCTTC 2 cut(s) 417, 563
Ecl136II GAGCTC 1 cut(s) 590
Eco24I GRGCYC 1 cut(s) 592
Eco53kI GAGCTC 1 cut(s) 590
Eco57I CTGAAG 1 cut(s) 587
EcoICRI GAGCTC 1 cut(s) 590
EcoO109I RGGNCCY 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 592
FaeI CATG 3 cut(s) 143, 618, 670
FaiI YATR 9 cut(s) 141, 561, 605, 616, 624, 653, 668, 689, 698
FatI CATG 3 cut(s) 139, 614, 666
FauI CCCGC 1 cut(s) 463
Fnu4HI GCNGC 6 cut(s) 126, 183, 219, 392, 416, 619
FokI GGATG 3 cut(s) 259, 269, 650
FriOI GRGCYC 1 cut(s) 592
Fsp4HI GCNGC 6 cut(s) 126, 183, 219, 392, 416, 619
FspBI CTAG 1 cut(s) 129
FspI TGCGCA 1 cut(s) 372
GlaI GCGC 3 cut(s) 158, 208, 372
GluI GCNGC 6 cut(s) 126, 183, 219, 392, 416, 619
GsuI CTGGAG 1 cut(s) 250
HaeIII GGCC 3 cut(s) 93, 168, 407
HapII CCGG 2 cut(s) 204, 409
HgaI GACGC 1 cut(s) 284
HhaI GCGC 3 cut(s) 159, 209, 373
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 3 cut(s) 143, 618, 670
Hin6I GCGC 3 cut(s) 157, 207, 371
HinP1I GCGC 3 cut(s) 157, 207, 371
HincII GTYRAC 1 cut(s) 352
HindII GTYRAC 1 cut(s) 352
HinfI GANTC 3 cut(s) 326, 448, 607
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 2 cut(s) 204, 409
HphI GGTGA 1 cut(s) 668
Hpy166II GTNNAC 2 cut(s) 352, 364
Hpy188I TCNGA 3 cut(s) 331, 528, 550
Hpy188III TCNNGA 2 cut(s) 112, 199
Hpy8I GTNNAC 2 cut(s) 352, 364
Hpy99I CGWCG 2 cut(s) 339, 631
HpyAV CCTTC 4 cut(s) 93, 109, 157, 523
HpyCH4III ACNGT 1 cut(s) 290
HpyCH4IV ACGT 2 cut(s) 348, 626
HpyCH4V TGCA 2 cut(s) 559, 618
HpyF10VI GCNNNNNNNGC 7 cut(s) 165, 215, 261, 377, 391, 476, 485
HpyF3I CTNAG 3 cut(s) 191, 386, 549
HpySE526I ACGT 2 cut(s) 348, 626
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 3 cut(s) 143, 618, 670
HspAI GCGC 3 cut(s) 157, 207, 371
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 331, 517
LmnI GCTCC 1 cut(s) 269
LpnPI CCDG 9 cut(s) 87, 217, 219, 229, 280, 404, 422, 449, 498
Lsp1109I GCAGC 5 cut(s) 137, 194, 403, 427, 630
MaeI CTAG 1 cut(s) 129
MaeII ACGT 2 cut(s) 348, 626
MaeIII GTNAC 4 cut(s) 142, 272, 290, 542
MalI GATC 2 cut(s) 333, 519
MboI GATC 2 cut(s) 331, 517
MboII GAAGA 9 cut(s) 24, 91, 94, 108, 434, 442, 580, 602, 610
MhlI GDGCHC 1 cut(s) 592
MluCI AATT 1 cut(s) 661
MlyI GAGTC 1 cut(s) 335
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 359
MspA1I CMGCKG 1 cut(s) 418
MspI CCGG 2 cut(s) 204, 409
MspR9I CCNGG 1 cut(s) 409
MwoI GCNNNNNNNGC 7 cut(s) 165, 215, 261, 377, 391, 476, 485
NciI CCSGG 1 cut(s) 409
NdeII GATC 2 cut(s) 331, 517
NheI GCTAGC 1 cut(s) 128
NlaIII CATG 3 cut(s) 143, 618, 670
NmuCI GTSAC 2 cut(s) 142, 272
NsbI TGCGCA 1 cut(s) 372
PfeI GAWTC 2 cut(s) 448, 607
PflFI GACNNNGTC 1 cut(s) 278
PflMI CCANNNNNTGG 1 cut(s) 495
PkrI GCNGC 6 cut(s) 127, 184, 220, 393, 417, 620
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
Psp124BI GAGCTC 1 cut(s) 592
Psp1406I AACGTT 1 cut(s) 348
PspPI GGNCC 2 cut(s) 166, 406
PsyI GACNNNGTC 1 cut(s) 278
PvuII CAGCTG 1 cut(s) 418
RsaI GTAC 1 cut(s) 483
RsaNI GTAC 1 cut(s) 482
RseI CAYNNNNRTG 1 cut(s) 359
SacI GAGCTC 1 cut(s) 592
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 6 cut(s) 126, 183, 219, 392, 416, 619
Sau3AI GATC 2 cut(s) 331, 517
Sau96I GGNCC 2 cut(s) 166, 406
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 1 cut(s) 409
SduI GDGCHC 1 cut(s) 592
SmiMI CAYNNNNRTG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
Sse9I AATT 1 cut(s) 661
SsiI CCGC 4 cut(s) 136, 216, 219, 470
SspMI CTAG 1 cut(s) 129
SstI GAGCTC 1 cut(s) 592
StyD4I CCNGG 1 cut(s) 407
TaaI ACNGT 1 cut(s) 290
TaiI ACGT 2 cut(s) 351, 629
TasI AATT 1 cut(s) 661
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 448, 607
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 81
TseFI GTSAC 2 cut(s) 142, 272
TseI GCWGC 5 cut(s) 125, 182, 391, 415, 618
Tsp45I GTSAC 2 cut(s) 142, 272
TspDTI ATGAA 3 cut(s) 78, 620, 683
TspGWI ACGGA 1 cut(s) 28
TspRI CASTG 1 cut(s) 81
Tth111I GACNNNGTC 1 cut(s) 278
Van91I CCANNNNNTGG 1 cut(s) 495
XcmI CCANNNNNNNNNTGG 1 cut(s) 492
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.